Wall clock time and date at job start Tue Mar 31 2020 14:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47001 * 2 1 4 4 N 1.46498 * 109.47146 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99785 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00256 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99835 * 180.02562 * 5 4 3 8 8 C 1.53070 * 109.44585 * 59.79079 * 7 5 4 9 9 C 1.53195 * 109.29524 * 181.23845 * 8 7 5 10 10 N 1.46919 * 108.89273 * 305.57804 * 9 8 7 11 11 C 1.34783 * 120.63144 * 233.55709 * 10 9 8 12 12 O 1.21274 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99922 * 179.97438 * 11 10 9 14 14 C 1.52999 * 109.47009 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47521 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47358 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46846 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00490 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99695 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99926 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00133 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46901 * 90.00223 * 21 19 17 23 23 H 1.48497 * 109.47610 * 210.00010 * 21 19 17 24 24 H 1.48498 * 109.47281 * 330.00495 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 10 9 8 26 26 C 1.53039 * 109.46083 * 179.97438 * 7 5 4 27 27 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47161 * 300.00101 * 1 2 3 29 29 H 1.08999 * 109.47154 * 60.00142 * 1 2 3 30 30 H 1.08996 * 109.47631 * 240.00148 * 2 1 3 31 31 H 1.09004 * 109.47342 * 119.99144 * 2 1 3 32 32 H 1.08998 * 109.47532 * 59.99486 * 3 2 1 33 33 H 1.08999 * 109.47050 * 299.99921 * 3 2 1 34 34 H 0.96993 * 120.00104 * 0.02562 * 4 3 2 35 35 H 1.09007 * 109.45494 * 299.96338 * 7 5 4 36 36 H 1.08997 * 109.38860 * 61.36032 * 8 7 5 37 37 H 1.09003 * 109.62046 * 301.25375 * 8 7 5 38 38 H 1.09002 * 109.58720 * 185.71834 * 9 8 7 39 39 H 1.08996 * 109.58651 * 65.43731 * 9 8 7 40 40 H 1.09001 * 109.47385 * 300.00399 * 13 11 10 41 41 H 1.08997 * 109.47457 * 60.00250 * 13 11 10 42 42 H 1.09001 * 109.46917 * 300.00128 * 14 13 11 43 43 H 1.08997 * 109.47262 * 59.99573 * 14 13 11 44 44 H 1.09004 * 109.46493 * 299.99956 * 15 14 13 45 45 H 1.08998 * 109.46599 * 59.99358 * 15 14 13 46 46 H 1.09001 * 109.47282 * 300.00086 * 16 15 14 47 47 H 1.08997 * 109.47062 * 59.99631 * 16 15 14 48 48 H 0.96996 * 119.99813 * 179.97438 * 20 19 17 49 49 H 1.08998 * 109.58787 * 66.18123 * 25 10 9 50 50 H 1.09007 * 109.58600 * 186.46436 * 25 10 9 51 51 H 1.09002 * 109.49876 * 58.67167 * 26 7 5 52 52 H 1.09005 * 109.52615 * 298.59417 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1787 2.6098 0.0012 6 8 3.5723 3.6601 0.0008 7 6 5.6857 2.6099 0.0013 8 6 6.1954 1.8843 -1.2464 9 6 7.7270 1.8593 -1.2273 10 7 8.2234 3.2343 -1.0805 11 6 9.1170 3.7388 -1.9544 12 8 9.5184 3.0563 -2.8730 13 6 9.6162 5.1512 -1.7907 14 6 10.6130 5.4723 -2.9062 15 6 11.1204 6.9061 -2.7397 16 6 12.1176 7.2269 -3.8548 17 6 12.6169 8.6394 -3.6910 18 1 12.2591 9.2472 -2.8733 19 6 13.5305 9.1556 -4.5854 20 7 13.9666 10.3881 -4.4422 21 14 14.1500 8.1040 -5.9995 22 1 13.2656 8.2886 -7.1780 23 1 15.5340 8.5119 -6.3506 24 1 14.1427 6.6754 -5.5942 25 6 7.7271 4.0491 0.0368 26 6 6.1955 4.0529 0.0014 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9565 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9899 0.6026 0.0006 35 1 6.0488 2.0961 0.8915 36 1 5.8512 2.4103 -2.1368 37 1 5.8150 0.8629 -1.2569 38 1 8.0973 1.4348 -2.1605 39 1 8.0721 1.2547 -0.3886 40 1 8.7752 5.8425 -1.8453 41 1 10.1079 5.2530 -0.8233 42 1 11.4540 4.7810 -2.8519 43 1 10.1210 5.3706 -3.8735 44 1 10.2795 7.5976 -2.7937 45 1 11.6125 7.0072 -1.7724 46 1 12.9584 6.5354 -3.8004 47 1 11.6259 7.1256 -4.8222 48 1 14.6096 10.7511 -5.0712 49 1 8.0701 3.6238 0.9799 50 1 8.0994 5.0690 -0.0610 51 1 5.8130 4.5738 0.8791 52 1 5.8533 4.5603 -0.9006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588274216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:25 Heat of formation + Delta-G solvation = -137.567816 kcal Electronic energy + Delta-G solvation = -27062.145648 eV Core-core repulsion = 23251.900193 eV Total energy + Delta-G solvation = -3810.245455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56835 -40.65380 -38.25277 -36.79435 -36.65124 -34.68536 -34.31399 -33.26027 -32.40966 -31.49171 -28.41740 -27.43226 -26.09652 -24.47204 -23.61906 -22.60629 -22.42068 -21.73066 -20.99682 -19.84409 -18.87226 -18.39104 -17.71595 -17.09401 -16.99674 -16.84773 -16.66822 -16.28683 -15.82451 -15.69130 -15.19592 -15.02049 -14.85252 -14.74326 -14.35794 -14.16936 -13.84986 -13.76824 -13.64972 -13.54126 -13.30694 -13.23426 -12.97840 -12.88323 -12.84206 -12.32792 -12.26423 -12.08295 -12.05550 -11.78888 -11.76654 -11.74866 -11.68191 -11.44527 -11.34241 -11.25857 -10.85266 -10.75812 -10.70587 -10.12007 -9.66043 -8.29477 -6.32581 1.34893 1.36131 1.49184 1.58662 1.63870 2.01097 2.21055 2.36147 3.05980 3.52574 3.56621 3.74556 3.82254 3.92434 4.00452 4.05564 4.06443 4.13990 4.23258 4.33398 4.34143 4.42150 4.56955 4.62471 4.64537 4.69277 4.72316 4.73419 4.75937 4.80662 4.83393 4.88100 4.89232 5.00407 5.10752 5.14153 5.14330 5.20375 5.23155 5.27622 5.29255 5.34180 5.48512 5.58115 5.61584 5.65722 5.68909 6.29778 6.36610 6.53728 6.75322 7.18969 7.24348 7.32320 8.87158 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.001722 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.582240 B =16260.405980 C =16514.060680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.718 5.718 5 C 0.513 3.487 6 O -0.587 6.587 7 C -0.098 4.098 8 C -0.114 4.114 9 C 0.109 3.891 10 N -0.614 5.614 11 C 0.512 3.488 12 O -0.586 6.586 13 C -0.133 4.133 14 C -0.096 4.096 15 C -0.094 4.094 16 C -0.017 4.017 17 C -0.532 4.532 18 H 0.037 0.963 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.947 3.053 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.252 1.252 25 C 0.105 3.895 26 C -0.114 4.114 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.417 0.583 35 H 0.134 0.866 36 H 0.047 0.953 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.266 0.734 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.087 0.913 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.789 -28.169 15.373 41.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.009 4.009 4 N -0.371 5.371 5 C 0.301 3.699 6 O -0.466 6.466 7 C -0.119 4.119 8 C -0.153 4.153 9 C -0.014 4.014 10 N -0.347 5.347 11 C 0.302 3.698 12 O -0.466 6.466 13 C -0.172 4.172 14 C -0.134 4.134 15 C -0.132 4.132 16 C -0.054 4.054 17 C -0.570 4.570 18 H 0.055 0.945 19 C -0.191 4.191 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.176 1.176 25 C -0.017 4.017 26 C -0.152 4.152 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.254 0.746 35 H 0.152 0.848 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.075 0.925 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.106 0.894 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -25.929 -27.680 14.835 40.726 hybrid contribution 0.510 0.105 -0.919 1.057 sum -25.418 -27.575 13.916 40.001 Atomic orbital electron populations 1.21704 0.94556 1.02737 1.02062 1.21680 0.96954 0.93968 1.03773 1.21424 0.79585 0.98692 1.01157 1.45967 1.07487 1.08928 1.74722 1.21088 0.90918 0.83337 0.74582 1.90711 1.71458 1.33200 1.51276 1.21351 0.89707 0.98908 1.01963 1.21862 0.95109 1.02085 0.96219 1.21678 0.93301 0.82583 1.03793 1.48275 1.42805 1.15011 1.28625 1.21116 0.78254 0.89689 0.80692 1.90665 1.59456 1.62497 1.34000 1.21720 1.00906 0.92626 1.01989 1.21278 0.98107 0.96086 0.97971 1.21343 0.98142 0.94980 0.98690 1.19571 0.95533 0.94376 0.95917 1.21554 1.24527 0.98718 1.12177 0.94479 1.25980 0.96301 0.96105 1.00763 1.70063 1.33270 1.16766 1.39032 0.85699 0.77745 0.80169 0.79300 1.19338 1.20606 1.17572 1.22025 0.93174 0.97072 0.89444 1.21696 0.94854 0.95336 1.03343 0.91159 0.92556 0.92880 0.90393 0.89973 0.92618 0.93238 0.74575 0.84842 0.93366 0.87235 0.90760 0.88426 0.87308 0.86477 0.92819 0.93243 0.92671 0.92285 0.96672 0.97039 0.92516 0.88109 0.88248 0.89419 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 71.98 0.71 -0.05 16 2 C -0.13 -0.53 6.05 30.59 0.19 -0.35 16 3 C 0.12 1.16 5.67 86.38 0.49 1.65 16 4 N -0.72 -6.30 5.44 -463.06 -2.52 -8.82 16 5 C 0.51 7.71 7.16 87.66 0.63 8.34 16 6 O -0.59 -14.80 15.98 -3.03 -0.05 -14.84 16 7 C -0.10 -0.95 2.48 -11.50 -0.03 -0.98 16 8 C -0.11 -1.12 5.27 30.68 0.16 -0.96 16 9 C 0.11 1.46 6.43 86.36 0.56 2.01 16 10 N -0.61 -10.79 2.97 -818.91 -2.44 -13.22 16 11 C 0.51 13.27 7.70 87.66 0.67 13.94 16 12 O -0.59 -20.36 15.39 -3.01 -0.05 -20.41 16 13 C -0.13 -3.21 4.05 29.85 0.12 -3.09 16 14 C -0.10 -3.21 4.50 30.60 0.14 -3.08 16 15 C -0.09 -3.69 5.15 30.59 0.16 -3.53 16 16 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 17 C -0.53 -31.74 9.66 25.60 0.25 -31.50 16 18 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 19 C 0.01 0.31 5.47 84.65 0.46 0.78 16 20 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 21 Si 0.95 46.41 27.47 68.60 1.88 48.29 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.25 -11.74 6.54 99.48 0.65 -11.09 16 25 C 0.10 1.21 6.34 86.36 0.55 1.76 16 26 C -0.11 -1.52 4.65 30.67 0.14 -1.38 16 27 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.42 0.80 7.87 -92.71 -0.73 0.07 16 35 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.39 7.53 -2.39 -0.02 0.37 16 38 H 0.07 1.39 7.00 -2.39 -0.02 1.38 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 2.28 7.69 -2.39 -0.02 2.26 16 41 H 0.12 2.25 7.94 -2.39 -0.02 2.23 16 42 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 43 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 44 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.01 0.74 7.20 -2.39 -0.02 0.72 16 47 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 48 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 49 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.10 1.11 5.93 -2.38 -0.01 1.09 16 51 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 52 H 0.05 0.95 8.13 -2.38 -0.02 0.93 16 Total: -1.00 -83.75 409.78 2.54 -81.21 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.09 Total: 5.65 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 5.32 Total: -17.13 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -4.66 Total: -82.77 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.09 Total: -35.25 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Total: -83.75 2.54 -81.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588274216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.362 kcal (2) G-P(sol) polarization free energy of solvation -83.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds