Wall clock time and date at job start Tue Mar 31 2020 14:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 N 1.46498 * 109.46791 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99910 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99972 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00065 * 180.02562 * 5 4 3 8 8 H 1.08993 * 109.50105 * 60.06731 * 7 5 4 9 9 C 1.53040 * 109.49816 * 299.99916 * 7 5 4 10 10 C 1.53040 * 109.54077 * 178.68469 * 9 7 5 11 11 C 1.53195 * 109.31233 * 61.36216 * 10 9 7 12 12 N 1.46920 * 108.77715 * 305.37008 * 11 10 9 13 13 C 1.34780 * 120.63110 * 233.58100 * 12 11 10 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47212 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00129 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99861 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00346 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46821 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47152 * 119.99687 * 23 21 19 26 26 H 1.48494 * 109.47204 * 239.99634 * 23 21 19 27 27 C 1.46928 * 118.74133 * 53.85726 * 12 11 10 28 28 H 1.09001 * 109.47126 * 59.99600 * 1 2 3 29 29 H 1.09000 * 109.47601 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47107 * 299.99583 * 1 2 3 31 31 H 1.09001 * 109.46714 * 240.00151 * 2 1 3 32 32 H 1.08995 * 109.47097 * 120.00842 * 2 1 3 33 33 H 1.09002 * 109.46462 * 60.00624 * 3 2 1 34 34 H 1.09001 * 109.47426 * 300.00217 * 3 2 1 35 35 H 0.97001 * 120.00480 * 0.02562 * 4 3 2 36 36 H 1.09004 * 109.45985 * 58.66413 * 9 7 5 37 37 H 1.09007 * 109.44745 * 298.69846 * 9 7 5 38 38 H 1.09001 * 109.49589 * 301.41780 * 10 9 7 39 39 H 1.09000 * 109.49984 * 181.31652 * 10 9 7 40 40 H 1.09002 * 109.59128 * 185.58008 * 11 10 9 41 41 H 1.09006 * 109.70098 * 65.22354 * 11 10 9 42 42 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 43 43 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 44 44 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 45 45 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 46 46 H 1.09002 * 109.47103 * 300.00247 * 17 16 15 47 47 H 1.09001 * 109.47066 * 60.00169 * 17 16 15 48 48 H 1.09002 * 109.47153 * 300.00216 * 18 17 16 49 49 H 1.09001 * 109.47289 * 60.00300 * 18 17 16 50 50 H 0.96993 * 120.00442 * 180.02562 * 22 21 19 51 51 H 1.09005 * 109.58457 * 65.92718 * 27 12 11 52 52 H 1.09001 * 109.58558 * 186.35342 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6096 0.0012 6 8 3.5726 3.6599 0.0008 7 6 5.6859 2.6095 0.0013 8 1 6.0497 2.0973 -0.8893 9 6 6.1966 1.8876 1.2503 10 6 7.7267 1.8582 1.2349 11 6 8.2612 3.2938 1.2537 12 7 7.6605 4.0367 0.1375 13 6 8.4371 4.6906 -0.7490 14 8 7.9292 5.3000 -1.6665 15 6 9.9366 4.6638 -0.6008 16 6 10.5751 5.4772 -1.7284 17 6 12.0974 5.4506 -1.5777 18 6 12.7359 6.2634 -2.7056 19 6 14.2354 6.2366 -2.5575 20 1 14.6877 5.6944 -1.7403 21 6 15.0299 6.9052 -3.4646 22 7 14.4792 7.5659 -4.4595 23 14 16.8885 6.8725 -3.2806 24 1 17.2537 6.0663 -2.0881 25 1 17.4955 6.2668 -4.4930 26 1 17.3939 8.2589 -3.1139 27 6 6.1970 4.0582 0.0094 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 3.9900 0.6024 0.0006 36 1 5.8139 0.8670 1.2618 37 1 5.8525 2.4145 2.1403 38 1 8.0718 1.3534 0.3326 39 1 8.0892 1.3235 2.1128 40 1 9.3455 3.2815 1.1430 41 1 7.9954 3.7725 2.1962 42 1 10.2144 5.0950 0.3610 43 1 10.2884 3.6334 -0.6524 44 1 10.2973 5.0457 -2.6901 45 1 10.2233 6.5076 -1.6774 46 1 12.3749 5.8823 -0.6161 47 1 12.4495 4.4202 -1.6286 48 1 12.4584 5.8313 -3.6671 49 1 12.3839 7.2938 -2.6553 50 1 15.0380 8.0359 -5.0978 51 1 5.7643 4.5966 0.8527 52 1 5.9190 4.5505 -0.9226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588331656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:29 Heat of formation + Delta-G solvation = -115.828537 kcal Electronic energy + Delta-G solvation = -27099.721194 eV Core-core repulsion = 23290.418425 eV Total energy + Delta-G solvation = -3809.302769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82736 -39.68414 -37.42921 -36.23871 -34.89612 -33.68172 -32.78895 -32.51508 -31.59376 -29.67088 -27.08474 -26.14988 -25.15290 -24.01100 -22.34759 -22.20292 -21.60876 -20.28875 -19.97154 -18.99643 -17.52682 -16.89380 -16.58819 -16.28479 -16.13385 -15.74405 -15.67694 -15.22974 -14.77089 -14.60157 -14.42009 -14.10967 -13.99708 -13.52428 -13.42353 -13.18676 -13.02450 -12.80445 -12.60392 -12.55582 -12.14263 -11.95516 -11.74097 -11.69563 -11.57423 -11.46792 -11.42705 -11.35498 -11.02366 -10.97770 -10.51009 -10.46233 -10.37185 -10.13265 -9.71362 -9.58496 -9.52653 -9.19414 -8.94538 -8.79509 -8.28647 -5.93130 -3.95615 2.25782 2.55616 2.74086 3.01885 3.34424 3.41575 3.45406 4.11285 4.22528 4.29467 4.35012 4.39927 4.50430 4.57875 4.64030 4.67915 4.74555 4.91886 5.04697 5.05737 5.06983 5.14703 5.23397 5.31474 5.34846 5.39808 5.42341 5.43945 5.44514 5.45675 5.54282 5.57339 5.64545 5.74893 5.82948 5.90369 5.98778 6.16750 6.29116 6.37727 6.58395 6.87198 7.02296 7.04936 7.22354 7.33024 7.76944 7.81444 7.93009 8.08569 8.24726 8.50269 9.12406 9.68001 11.18217 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.031760 B = 0.001683 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.387389 B =16636.255646 C =16974.746300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.733 5.733 5 C 0.522 3.478 6 O -0.534 6.534 7 C -0.123 4.123 8 H 0.103 0.897 9 C -0.109 4.109 10 C -0.134 4.134 11 C 0.103 3.897 12 N -0.622 5.622 13 C 0.515 3.485 14 O -0.532 6.532 15 C -0.137 4.137 16 C -0.104 4.104 17 C -0.110 4.110 18 C 0.019 3.981 19 C -0.520 4.520 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.132 3.868 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.259 0.741 51 H 0.074 0.926 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.274 -20.093 15.591 35.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.385 5.385 5 C 0.307 3.693 6 O -0.410 6.410 7 C -0.145 4.145 8 H 0.121 0.879 9 C -0.147 4.147 10 C -0.173 4.173 11 C -0.020 4.020 12 N -0.357 5.357 13 C 0.304 3.696 14 O -0.407 6.407 15 C -0.176 4.176 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.018 4.018 19 C -0.558 4.558 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C 0.009 3.991 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.034 0.966 49 H 0.034 0.966 50 H 0.069 0.931 51 H 0.092 0.908 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.945 -18.861 14.930 35.381 hybrid contribution 1.201 -0.542 0.080 1.320 sum -24.744 -19.403 15.010 34.843 Atomic orbital electron populations 1.21682 0.94444 1.02252 1.02442 1.21737 0.97128 0.95748 1.02753 1.21426 0.79470 0.97213 1.02600 1.46029 1.07400 1.08759 1.76333 1.20522 0.89702 0.83578 0.75476 1.90740 1.70359 1.31224 1.48638 1.21794 0.91475 0.99905 1.01312 0.87911 1.21518 0.96321 1.00194 0.96666 1.21932 0.94948 0.97002 1.03372 1.21786 0.99202 0.91346 0.89639 1.48209 1.06265 1.52575 1.28646 1.21138 0.90095 0.77606 0.80749 1.90709 1.75640 1.42272 1.32080 1.21818 0.90046 1.03116 1.02658 1.21468 0.96524 0.99697 0.96528 1.21643 0.91901 1.00395 1.00789 1.19106 0.94780 0.95029 0.92907 1.21325 0.91937 1.31406 1.11124 0.92706 1.25041 0.98601 0.95523 0.95395 1.69983 1.35055 1.33531 1.14858 0.86565 0.85978 0.77691 0.77921 1.19783 1.21075 1.21071 1.21337 0.79420 0.93598 1.04722 0.92262 0.92108 0.92307 0.91248 0.91298 0.91434 0.91384 0.76531 0.91227 0.91005 0.90914 0.89994 0.88863 0.91200 0.89146 0.89178 0.91822 0.91776 0.93483 0.93520 0.96585 0.96563 0.93118 0.90757 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.91 37.16 0.37 -0.14 16 2 C -0.14 -0.47 6.05 -26.73 -0.16 -0.63 16 3 C 0.12 0.69 5.67 -4.04 -0.02 0.67 16 4 N -0.73 -4.48 5.44 -60.29 -0.33 -4.81 16 5 C 0.52 4.87 7.16 -10.99 -0.08 4.79 16 6 O -0.53 -7.29 15.93 5.56 0.09 -7.20 16 7 C -0.12 -0.98 2.69 -91.43 -0.25 -1.23 16 8 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 9 C -0.11 -0.57 5.07 -26.69 -0.14 -0.71 16 10 C -0.13 -0.69 6.08 -26.61 -0.16 -0.85 16 11 C 0.10 0.74 6.34 -3.71 -0.02 0.72 16 12 N -0.62 -6.88 2.97 -172.50 -0.51 -7.39 16 13 C 0.51 7.56 7.70 -10.98 -0.08 7.48 16 14 O -0.53 -10.18 15.39 5.56 0.09 -10.10 16 15 C -0.14 -1.85 4.05 -27.88 -0.11 -1.96 16 16 C -0.10 -1.90 4.50 -26.74 -0.12 -2.02 16 17 C -0.11 -2.28 5.15 -26.74 -0.14 -2.41 16 18 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 19 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 20 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 23 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.13 1.49 5.08 -3.48 -0.02 1.47 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.40 1.35 7.87 -40.82 -0.32 1.03 16 36 H 0.07 0.23 7.53 -51.93 -0.39 -0.16 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.61 5.93 -51.93 -0.31 0.30 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 1.06 7.94 -51.93 -0.41 0.65 16 43 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 44 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 45 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 52 H 0.10 1.42 7.00 -51.93 -0.36 1.06 16 LS Contribution 413.34 15.07 6.23 6.23 Total: -1.00 -36.66 413.34 -9.96 -46.62 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -9.76 Total: -5.04 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.48 Total: -8.32 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.10 Total: -39.16 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.66 -9.96 -46.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588331656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.204 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds