Wall clock time and date at job start Tue Mar 31 2020 14:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 N 1.46498 * 109.46791 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99910 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99972 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00065 * 180.02562 * 5 4 3 8 8 H 1.08993 * 109.50105 * 60.06731 * 7 5 4 9 9 C 1.53040 * 109.49816 * 299.99916 * 7 5 4 10 10 C 1.53040 * 109.54077 * 178.68469 * 9 7 5 11 11 C 1.53195 * 109.31233 * 61.36216 * 10 9 7 12 12 N 1.46920 * 108.77715 * 305.37008 * 11 10 9 13 13 C 1.34780 * 120.63110 * 233.58100 * 12 11 10 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47212 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00129 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99861 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00346 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46821 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47152 * 119.99687 * 23 21 19 26 26 H 1.48494 * 109.47204 * 239.99634 * 23 21 19 27 27 C 1.46928 * 118.74133 * 53.85726 * 12 11 10 28 28 H 1.09001 * 109.47126 * 59.99600 * 1 2 3 29 29 H 1.09000 * 109.47601 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47107 * 299.99583 * 1 2 3 31 31 H 1.09001 * 109.46714 * 240.00151 * 2 1 3 32 32 H 1.08995 * 109.47097 * 120.00842 * 2 1 3 33 33 H 1.09002 * 109.46462 * 60.00624 * 3 2 1 34 34 H 1.09001 * 109.47426 * 300.00217 * 3 2 1 35 35 H 0.97001 * 120.00480 * 0.02562 * 4 3 2 36 36 H 1.09004 * 109.45985 * 58.66413 * 9 7 5 37 37 H 1.09007 * 109.44745 * 298.69846 * 9 7 5 38 38 H 1.09001 * 109.49589 * 301.41780 * 10 9 7 39 39 H 1.09000 * 109.49984 * 181.31652 * 10 9 7 40 40 H 1.09002 * 109.59128 * 185.58008 * 11 10 9 41 41 H 1.09006 * 109.70098 * 65.22354 * 11 10 9 42 42 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 43 43 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 44 44 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 45 45 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 46 46 H 1.09002 * 109.47103 * 300.00247 * 17 16 15 47 47 H 1.09001 * 109.47066 * 60.00169 * 17 16 15 48 48 H 1.09002 * 109.47153 * 300.00216 * 18 17 16 49 49 H 1.09001 * 109.47289 * 60.00300 * 18 17 16 50 50 H 0.96993 * 120.00442 * 180.02562 * 22 21 19 51 51 H 1.09005 * 109.58457 * 65.92718 * 27 12 11 52 52 H 1.09001 * 109.58558 * 186.35342 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6096 0.0012 6 8 3.5726 3.6599 0.0008 7 6 5.6859 2.6095 0.0013 8 1 6.0497 2.0973 -0.8893 9 6 6.1966 1.8876 1.2503 10 6 7.7267 1.8582 1.2349 11 6 8.2612 3.2938 1.2537 12 7 7.6605 4.0367 0.1375 13 6 8.4371 4.6906 -0.7490 14 8 7.9292 5.3000 -1.6665 15 6 9.9366 4.6638 -0.6008 16 6 10.5751 5.4772 -1.7284 17 6 12.0974 5.4506 -1.5777 18 6 12.7359 6.2634 -2.7056 19 6 14.2354 6.2366 -2.5575 20 1 14.6877 5.6944 -1.7403 21 6 15.0299 6.9052 -3.4646 22 7 14.4792 7.5659 -4.4595 23 14 16.8885 6.8725 -3.2806 24 1 17.2537 6.0663 -2.0881 25 1 17.4955 6.2668 -4.4930 26 1 17.3939 8.2589 -3.1139 27 6 6.1970 4.0582 0.0094 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 3.9900 0.6024 0.0006 36 1 5.8139 0.8670 1.2618 37 1 5.8525 2.4145 2.1403 38 1 8.0718 1.3534 0.3326 39 1 8.0892 1.3235 2.1128 40 1 9.3455 3.2815 1.1430 41 1 7.9954 3.7725 2.1962 42 1 10.2144 5.0950 0.3610 43 1 10.2884 3.6334 -0.6524 44 1 10.2973 5.0457 -2.6901 45 1 10.2233 6.5076 -1.6774 46 1 12.3749 5.8823 -0.6161 47 1 12.4495 4.4202 -1.6286 48 1 12.4584 5.8313 -3.6671 49 1 12.3839 7.2938 -2.6553 50 1 15.0380 8.0359 -5.0978 51 1 5.7643 4.5966 0.8527 52 1 5.9190 4.5505 -0.9226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588331656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:28 Heat of formation + Delta-G solvation = -140.124113 kcal Electronic energy + Delta-G solvation = -27100.774729 eV Core-core repulsion = 23290.418425 eV Total energy + Delta-G solvation = -3810.356304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65395 -40.63363 -38.29300 -36.82537 -36.62889 -34.70380 -34.34070 -33.25189 -32.36705 -31.29137 -28.05391 -27.24281 -26.20008 -24.93226 -23.75619 -22.59970 -22.45800 -21.73166 -20.96458 -19.88948 -18.46548 -18.33848 -17.72387 -17.28479 -16.91836 -16.77264 -16.70047 -16.40803 -15.84922 -15.70419 -15.31078 -14.98891 -14.82494 -14.53212 -14.26157 -14.25369 -13.85433 -13.72404 -13.60988 -13.50648 -13.40031 -13.22728 -12.96018 -12.83994 -12.56164 -12.32068 -12.18139 -12.13789 -12.07057 -12.00907 -11.92691 -11.77011 -11.65070 -11.37003 -11.31375 -11.11645 -10.90927 -10.69708 -10.54817 -10.16585 -9.70226 -8.17550 -6.29878 1.41382 1.42466 1.52446 1.55941 1.59025 1.80988 2.28642 2.43019 3.15364 3.43971 3.60290 3.74793 3.82594 3.91169 4.01677 4.05982 4.07982 4.13822 4.15419 4.22241 4.33831 4.47706 4.61463 4.64168 4.67175 4.69500 4.74454 4.76366 4.80516 4.85775 4.86349 4.87276 4.94154 5.08206 5.11212 5.14036 5.19145 5.22994 5.30797 5.34617 5.38220 5.38640 5.45419 5.52088 5.58350 5.79184 5.89202 6.26216 6.36034 6.47277 6.89015 7.14635 7.18859 7.39963 8.94966 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.031760 B = 0.001683 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.387389 B =16636.255646 C =16974.746300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.115 3.885 4 N -0.714 5.714 5 C 0.518 3.482 6 O -0.586 6.586 7 C -0.112 4.112 8 H 0.109 0.891 9 C -0.104 4.104 10 C -0.128 4.128 11 C 0.090 3.910 12 N -0.611 5.611 13 C 0.508 3.492 14 O -0.592 6.592 15 C -0.123 4.123 16 C -0.097 4.097 17 C -0.094 4.094 18 C 0.017 3.983 19 C -0.540 4.540 20 H 0.068 0.932 21 C -0.007 4.007 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.255 1.255 25 H -0.279 1.279 26 H -0.280 1.280 27 C 0.132 3.868 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.418 0.582 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.041 0.959 45 H 0.038 0.962 46 H 0.062 0.938 47 H 0.064 0.936 48 H -0.016 1.016 49 H -0.018 1.018 50 H 0.262 0.738 51 H 0.069 0.931 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.890 -23.656 18.515 38.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.366 5.366 5 C 0.305 3.695 6 O -0.466 6.466 7 C -0.134 4.134 8 H 0.127 0.873 9 C -0.142 4.142 10 C -0.166 4.166 11 C -0.031 4.031 12 N -0.343 5.343 13 C 0.299 3.701 14 O -0.473 6.473 15 C -0.162 4.162 16 C -0.135 4.135 17 C -0.131 4.131 18 C -0.020 4.020 19 C -0.578 4.578 20 H 0.086 0.914 21 C -0.204 4.204 22 N -0.579 5.579 23 Si 0.794 3.206 24 H -0.179 1.179 25 H -0.205 1.205 26 H -0.206 1.206 27 C 0.008 3.992 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.255 0.745 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.002 0.998 49 H 0.001 0.999 50 H 0.071 0.929 51 H 0.087 0.913 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.566 -22.520 17.916 37.836 hybrid contribution 0.678 0.580 -0.836 1.223 sum -23.888 -21.940 17.081 36.657 Atomic orbital electron populations 1.21706 0.94450 1.02794 1.02077 1.21680 0.97013 0.93767 1.03849 1.21468 0.79215 0.98918 1.01298 1.45901 1.07603 1.08612 1.74529 1.20806 0.90319 0.83595 0.74788 1.90722 1.71372 1.33226 1.51329 1.21700 0.90444 0.97805 1.03436 0.87346 1.21570 0.96714 1.01301 0.94598 1.21938 0.94343 0.95449 1.04846 1.22222 1.00013 0.92420 0.88414 1.48242 1.05918 1.51531 1.28656 1.21381 0.90845 0.77321 0.80586 1.90694 1.76609 1.45133 1.34832 1.21697 0.88775 1.04192 1.01573 1.21263 0.95289 0.99179 0.97789 1.21435 0.92840 1.00141 0.98710 1.19077 0.94985 0.94005 0.93961 1.21793 0.92939 1.31517 1.11549 0.91365 1.26103 1.04594 0.94879 0.94846 1.70144 1.37368 1.34494 1.15936 0.85325 0.78683 0.78013 0.78559 1.17883 1.20507 1.20617 1.21222 0.79781 0.95813 1.02364 0.92932 0.91052 0.92490 0.90446 0.89773 0.92398 0.93216 0.74488 0.88211 0.91021 0.90823 0.86977 0.87423 0.89824 0.86319 0.85850 0.93989 0.94292 0.91951 0.91715 0.99758 0.99917 0.92918 0.91277 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 71.98 0.71 -0.14 16 2 C -0.13 -0.64 6.05 30.59 0.19 -0.45 16 3 C 0.11 1.31 5.67 86.38 0.49 1.80 16 4 N -0.71 -7.81 5.44 -463.06 -2.52 -10.33 16 5 C 0.52 9.64 7.16 87.66 0.63 10.26 16 6 O -0.59 -16.99 15.93 -3.03 -0.05 -17.04 16 7 C -0.11 -1.67 2.69 -11.32 -0.03 -1.70 16 8 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 9 C -0.10 -0.73 5.07 30.62 0.16 -0.58 16 10 C -0.13 -0.75 6.08 30.67 0.19 -0.56 16 11 C 0.09 0.99 6.34 86.36 0.55 1.54 16 12 N -0.61 -12.96 2.97 -818.04 -2.43 -15.39 16 13 C 0.51 15.00 7.70 87.66 0.67 15.67 16 14 O -0.59 -24.21 15.39 -3.03 -0.05 -24.25 16 15 C -0.12 -3.11 4.05 29.85 0.12 -2.99 16 16 C -0.10 -3.60 4.50 30.59 0.14 -3.47 16 17 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16 18 C 0.02 0.94 4.97 29.85 0.15 1.08 16 19 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 20 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 21 C -0.01 -0.43 5.46 84.66 0.46 0.04 16 22 N -0.94 -59.62 13.29 21.45 0.28 -59.33 16 23 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 C 0.13 3.07 5.08 86.51 0.44 3.51 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.42 1.63 7.87 -92.71 -0.73 0.90 16 36 H 0.10 0.16 7.53 -2.38 -0.02 0.15 16 37 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.11 0.91 5.93 -2.39 -0.01 0.90 16 41 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.12 2.38 7.94 -2.39 -0.02 2.36 16 43 H 0.12 2.34 7.69 -2.39 -0.02 2.32 16 44 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 45 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 46 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 48 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 49 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 50 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 51 H 0.07 1.66 7.97 -2.38 -0.02 1.64 16 52 H 0.06 1.84 7.00 -2.39 -0.02 1.82 16 Total: -1.00 -86.37 413.34 2.66 -83.70 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.14 Total: 6.58 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 5.25 Total: -10.86 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -4.66 Total: -85.05 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.09 Total: -41.29 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -86.37 2.66 -83.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588331656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.421 kcal (2) G-P(sol) polarization free energy of solvation -86.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds