Wall clock time and date at job start Tue Mar 31 2020 13:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47547 * 2 1 4 4 N 1.46504 * 109.47084 * 119.99974 * 2 1 3 5 5 C 1.34776 * 120.00086 * 115.03331 * 4 2 1 6 6 O 1.21272 * 120.00134 * 184.79604 * 5 4 2 7 7 C 1.50704 * 119.99674 * 4.80304 * 5 4 2 8 8 N 1.46901 * 109.46786 * 185.03346 * 7 5 4 9 9 C 1.47444 * 111.00641 * 69.87084 * 8 7 5 10 10 C 1.54311 * 107.23485 * 123.25293 * 9 8 7 11 11 C 1.55145 * 103.01944 * 22.29268 * 10 9 8 12 12 O 1.42895 * 110.99537 * 82.47203 * 11 10 9 13 13 C 1.50701 * 110.98834 * 206.25537 * 11 10 9 14 14 H 1.07992 * 120.00143 * 118.54607 * 13 11 10 15 15 C 1.37873 * 119.99777 * 298.53812 * 13 11 10 16 16 N 1.31513 * 120.00129 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 120.00113 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47036 * 89.99745 * 17 15 13 19 19 H 1.48500 * 109.47300 * 210.00153 * 17 15 13 20 20 H 1.48496 * 109.46878 * 330.00308 * 17 15 13 21 21 C 1.47850 * 110.99811 * 190.71739 * 8 7 5 22 22 C 1.46494 * 119.99956 * 295.04086 * 4 2 1 23 23 C 1.53878 * 110.03014 * 239.99680 * 22 4 2 24 24 C 1.54264 * 106.63970 * 240.68785 * 23 22 4 25 25 C 1.54960 * 104.16142 * 336.44653 * 24 23 22 26 26 C 1.54270 * 110.03628 * 122.83214 * 22 4 2 27 27 H 1.08997 * 109.47261 * 305.00605 * 1 2 3 28 28 H 1.09002 * 109.46975 * 65.00608 * 1 2 3 29 29 H 1.09003 * 109.47703 * 185.00488 * 1 2 3 30 30 H 1.09003 * 109.46795 * 239.99613 * 2 1 3 31 31 H 1.08999 * 109.47455 * 174.97244 * 3 2 1 32 32 H 1.09001 * 109.46683 * 294.97428 * 3 2 1 33 33 H 1.09000 * 109.46549 * 54.96604 * 3 2 1 34 34 H 1.09002 * 109.47183 * 305.02626 * 7 5 4 35 35 H 1.08996 * 109.47230 * 65.03123 * 7 5 4 36 36 H 1.08994 * 109.89050 * 242.66562 * 9 8 7 37 37 H 1.09009 * 109.88407 * 3.85374 * 9 8 7 38 38 H 1.09002 * 110.70562 * 140.66958 * 10 9 8 39 39 H 1.08997 * 110.71396 * 263.90739 * 10 9 8 40 40 H 0.96697 * 113.99960 * 61.45281 * 12 11 10 41 41 H 0.97008 * 120.00006 * 179.97438 * 16 15 13 42 42 H 1.08991 * 110.37394 * 332.46177 * 21 8 7 43 43 H 1.08994 * 110.37463 * 94.80688 * 21 8 7 44 44 H 1.09000 * 110.01843 * 1.38365 * 22 4 2 45 45 H 1.09003 * 110.03529 * 0.02562 * 23 22 4 46 46 H 1.09005 * 110.03282 * 121.37923 * 23 22 4 47 47 H 1.09005 * 110.48364 * 95.09842 * 24 23 22 48 48 H 1.09002 * 110.48724 * 217.73238 * 24 23 22 49 49 H 1.09004 * 110.71911 * 279.56969 * 25 24 23 50 50 H 1.09000 * 110.76497 * 156.22021 * 25 24 23 51 51 H 1.09003 * 110.48582 * 261.57099 * 26 22 4 52 52 H 1.08998 * 110.48423 * 24.07867 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7086 -1.8418 1.0751 6 8 3.0375 -2.4588 2.0660 7 6 3.0718 -2.3623 -0.2918 8 7 3.7094 -3.6793 -0.1606 9 6 2.7336 -4.6988 0.2664 10 6 2.7508 -5.8203 -0.7932 11 6 4.1401 -5.6481 -1.4620 12 8 5.1615 -6.2847 -0.6917 13 6 4.1277 -6.1722 -2.8749 14 1 4.3299 -5.5053 -3.6999 15 6 3.8585 -7.5030 -3.1141 16 7 3.6120 -8.3150 -2.1094 17 14 3.8438 -8.1529 -4.8655 18 1 5.2054 -8.6188 -5.2319 19 1 2.8893 -9.2861 -4.9650 20 1 3.4253 -7.0702 -5.7916 21 6 4.3078 -4.1082 -1.4428 22 6 1.7562 -0.1300 2.5240 23 6 3.0842 0.1665 3.2425 24 6 3.0944 -0.6922 4.5240 25 6 1.5957 -0.9618 4.8116 26 6 1.0050 -1.1593 3.3935 27 1 -0.3633 0.5895 0.8417 28 1 -0.3633 0.4342 -0.9315 29 1 -0.3634 -1.0237 0.0897 30 1 1.8932 -0.5139 -0.8900 31 1 3.1263 1.4438 0.0901 32 1 1.7521 1.9296 -0.9316 33 1 1.6050 1.9816 0.8415 34 1 2.1700 -2.4540 -0.8971 35 1 3.7632 -1.6701 -0.7722 36 1 3.0197 -5.1019 1.2378 37 1 1.7382 -4.2582 0.3239 38 1 2.6696 -6.7989 -0.3200 39 1 1.9523 -5.6755 -1.5208 40 1 5.0437 -7.2396 -0.5949 41 1 3.4221 -9.2513 -2.2778 42 1 3.7744 -3.6580 -2.2799 43 1 5.3639 -3.8411 -1.4769 44 1 1.1684 0.7836 2.4339 45 1 3.9238 -0.1064 2.6031 46 1 3.1410 1.2239 3.5011 47 1 3.6242 -1.6290 4.3514 48 1 3.5488 -0.1422 5.3482 49 1 1.1374 -0.1048 5.3051 50 1 1.4734 -1.8646 5.4101 51 1 -0.0649 -0.9504 3.3934 52 1 1.1951 -2.1714 3.0363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:14 Heat of formation + Delta-G solvation = -80.741957 kcal Electronic energy + Delta-G solvation = -29913.179313 eV Core-core repulsion = 26105.398012 eV Total energy + Delta-G solvation = -3807.781301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54101 -38.34707 -36.87386 -36.24914 -34.45644 -32.10435 -31.48304 -30.35568 -28.73279 -28.16289 -27.97523 -27.37446 -25.89574 -24.03459 -21.96112 -21.31650 -20.63790 -20.01107 -19.54986 -18.08523 -17.15986 -16.97371 -16.25787 -15.58408 -15.15150 -14.99151 -14.85639 -14.37678 -14.32445 -14.08994 -13.90859 -13.70884 -13.45638 -13.09098 -12.66623 -12.53006 -12.42492 -12.26350 -12.12033 -11.76423 -11.65036 -11.52608 -11.38126 -11.21545 -11.16275 -11.11085 -11.04853 -11.01978 -11.00615 -10.81930 -10.68020 -10.45922 -10.40708 -10.24904 -9.81316 -9.23649 -9.11706 -8.57607 -8.56765 -8.03210 -7.52979 -6.18771 -4.27453 2.91985 2.96087 3.22897 3.30068 3.32344 4.29419 4.41273 4.56029 4.60676 4.69245 4.84950 4.88454 4.91225 5.05246 5.10180 5.24500 5.32932 5.41158 5.47027 5.50346 5.51659 5.54314 5.59644 5.61921 5.66920 5.71933 5.77640 5.84373 5.89934 5.93709 5.96744 5.99344 6.03484 6.13398 6.22075 6.22355 6.28218 6.49431 6.55059 6.71508 6.78976 6.93979 7.12854 7.44218 7.46468 7.53226 7.67756 7.77502 7.85162 8.18907 8.52253 8.74728 9.41362 9.57120 10.88036 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.003211 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.925535 B = 8718.909613 C = 9405.083714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 C -0.161 4.161 4 N -0.614 5.614 5 C 0.516 3.484 6 O -0.500 6.500 7 C 0.032 3.968 8 N -0.508 5.508 9 C 0.056 3.944 10 C -0.145 4.145 11 C 0.253 3.747 12 O -0.577 6.577 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.072 3.928 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.059 3.941 22 C 0.150 3.850 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.136 4.136 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.377 0.623 41 H 0.266 0.734 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.056 0.944 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 18.884 7.080 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 C -0.219 4.219 4 N -0.350 5.350 5 C 0.303 3.697 6 O -0.373 6.373 7 C -0.100 4.100 8 N -0.232 5.232 9 C -0.071 4.071 10 C -0.185 4.185 11 C 0.213 3.787 12 O -0.385 6.385 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.131 4.131 16 N -0.532 5.532 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.068 4.068 22 C 0.047 3.953 23 C -0.165 4.165 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.174 4.174 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.226 0.774 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.075 0.925 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.668 19.017 8.071 21.708 hybrid contribution -1.101 -0.882 -1.754 2.251 sum -7.769 18.135 6.317 20.716 Atomic orbital electron populations 1.22190 0.95059 1.02635 1.02197 1.21197 0.94413 0.93715 0.88484 1.22169 1.01897 0.95573 1.02273 1.48303 1.56245 1.24386 1.06064 1.20685 0.77211 0.79829 0.91961 1.90664 1.51397 1.56166 1.39050 1.22220 0.98994 0.95058 0.93746 1.63374 1.30577 0.99661 1.29606 1.22762 0.91752 0.92696 0.99930 1.23288 1.00632 0.97914 0.96624 1.19501 0.83556 0.86662 0.89022 1.86153 1.51135 1.25886 1.75324 1.21536 1.48788 0.94786 0.92407 0.92139 1.24998 0.93749 0.96793 0.97527 1.69749 1.47650 1.05169 1.30667 0.86490 0.77998 0.78489 0.84380 1.20431 1.21141 1.19877 1.23028 0.98883 0.97114 0.87733 1.21570 0.95858 0.95972 0.81906 1.22427 0.97616 0.98962 0.97474 1.22273 0.96522 1.00610 0.96048 1.22367 0.95928 1.00819 0.96396 1.22754 0.98039 1.01553 0.95031 0.92400 0.91513 0.92101 0.88854 0.91979 0.91483 0.92344 0.92798 0.88808 0.91203 0.95337 0.90423 0.92823 0.77439 0.92389 0.93581 0.90982 0.89853 0.91293 0.92250 0.90322 0.92581 0.92244 0.91698 0.92495 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.19 37.16 0.34 -0.96 16 2 C 0.13 1.14 3.08 -67.93 -0.21 0.93 16 3 C -0.16 -1.17 9.01 37.16 0.33 -0.84 16 4 N -0.61 -7.18 2.31 -157.32 -0.36 -7.54 16 5 C 0.52 7.96 6.13 -10.98 -0.07 7.89 16 6 O -0.50 -9.31 11.80 5.56 0.07 -9.25 16 7 C 0.03 0.50 3.42 -4.97 -0.02 0.49 16 8 N -0.51 -10.36 4.82 -232.69 -1.12 -11.48 16 9 C 0.06 1.19 5.78 -2.84 -0.02 1.17 16 10 C -0.15 -3.45 5.37 -24.91 -0.13 -3.58 16 11 C 0.25 6.38 0.87 -89.63 -0.08 6.31 16 12 O -0.58 -15.57 13.16 -35.23 -0.46 -16.04 16 13 C -0.54 -14.39 8.27 -34.44 -0.28 -14.68 16 14 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 15 C 0.07 1.91 5.29 -17.82 -0.09 1.81 16 16 N -0.89 -24.05 10.75 55.43 0.60 -23.46 16 17 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.06 1.30 5.86 -2.29 -0.01 1.29 16 22 C 0.15 1.62 2.53 -66.81 -0.17 1.45 16 23 C -0.13 -1.42 5.82 -25.61 -0.15 -1.57 16 24 C -0.12 -1.37 6.41 -25.03 -0.16 -1.53 16 25 C -0.12 -1.26 6.91 -24.70 -0.17 -1.43 16 26 C -0.14 -1.59 6.06 -25.07 -0.15 -1.74 16 27 H 0.06 0.43 7.48 -51.93 -0.39 0.04 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.86 5.77 -51.93 -0.30 0.56 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.40 7.01 -51.93 -0.36 0.03 16 34 H 0.05 0.80 7.22 -51.93 -0.37 0.43 16 35 H 0.09 1.33 8.00 -51.93 -0.42 0.91 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.03 0.56 7.31 -51.92 -0.38 0.18 16 38 H 0.08 1.97 7.54 -51.93 -0.39 1.58 16 39 H 0.05 1.28 8.03 -51.93 -0.42 0.86 16 40 H 0.38 10.19 7.56 45.56 0.34 10.54 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 43 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 44 H 0.08 0.74 6.22 -51.93 -0.32 0.42 16 45 H 0.07 0.93 7.24 -51.93 -0.38 0.55 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 1.15 7.41 -51.93 -0.38 0.76 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.09 1.34 5.90 -51.93 -0.31 1.03 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -29.48 389.73 -10.14 -39.62 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.67 Total: 11.66 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.04 Total: -4.99 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.89 Total: -42.47 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.40 Total: -25.28 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.48 -10.14 -39.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.119 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds