Wall clock time and date at job start Tue Mar 31 2020 13:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47547 * 2 1 4 4 N 1.46504 * 109.47084 * 119.99974 * 2 1 3 5 5 C 1.34776 * 120.00086 * 115.03331 * 4 2 1 6 6 O 1.21272 * 120.00134 * 184.79604 * 5 4 2 7 7 C 1.50704 * 119.99674 * 4.80304 * 5 4 2 8 8 N 1.46901 * 109.46786 * 185.03346 * 7 5 4 9 9 C 1.47444 * 111.00641 * 69.87084 * 8 7 5 10 10 C 1.54311 * 107.23485 * 123.25293 * 9 8 7 11 11 C 1.55145 * 103.01944 * 22.29268 * 10 9 8 12 12 O 1.42895 * 110.99537 * 82.47203 * 11 10 9 13 13 C 1.50701 * 110.98834 * 206.25537 * 11 10 9 14 14 H 1.07992 * 120.00143 * 118.54607 * 13 11 10 15 15 C 1.37873 * 119.99777 * 298.53812 * 13 11 10 16 16 N 1.31513 * 120.00129 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 120.00113 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47036 * 89.99745 * 17 15 13 19 19 H 1.48500 * 109.47300 * 210.00153 * 17 15 13 20 20 H 1.48496 * 109.46878 * 330.00308 * 17 15 13 21 21 C 1.47850 * 110.99811 * 190.71739 * 8 7 5 22 22 C 1.46494 * 119.99956 * 295.04086 * 4 2 1 23 23 C 1.53878 * 110.03014 * 239.99680 * 22 4 2 24 24 C 1.54264 * 106.63970 * 240.68785 * 23 22 4 25 25 C 1.54960 * 104.16142 * 336.44653 * 24 23 22 26 26 C 1.54270 * 110.03628 * 122.83214 * 22 4 2 27 27 H 1.08997 * 109.47261 * 305.00605 * 1 2 3 28 28 H 1.09002 * 109.46975 * 65.00608 * 1 2 3 29 29 H 1.09003 * 109.47703 * 185.00488 * 1 2 3 30 30 H 1.09003 * 109.46795 * 239.99613 * 2 1 3 31 31 H 1.08999 * 109.47455 * 174.97244 * 3 2 1 32 32 H 1.09001 * 109.46683 * 294.97428 * 3 2 1 33 33 H 1.09000 * 109.46549 * 54.96604 * 3 2 1 34 34 H 1.09002 * 109.47183 * 305.02626 * 7 5 4 35 35 H 1.08996 * 109.47230 * 65.03123 * 7 5 4 36 36 H 1.08994 * 109.89050 * 242.66562 * 9 8 7 37 37 H 1.09009 * 109.88407 * 3.85374 * 9 8 7 38 38 H 1.09002 * 110.70562 * 140.66958 * 10 9 8 39 39 H 1.08997 * 110.71396 * 263.90739 * 10 9 8 40 40 H 0.96697 * 113.99960 * 61.45281 * 12 11 10 41 41 H 0.97008 * 120.00006 * 179.97438 * 16 15 13 42 42 H 1.08991 * 110.37394 * 332.46177 * 21 8 7 43 43 H 1.08994 * 110.37463 * 94.80688 * 21 8 7 44 44 H 1.09000 * 110.01843 * 1.38365 * 22 4 2 45 45 H 1.09003 * 110.03529 * 0.02562 * 23 22 4 46 46 H 1.09005 * 110.03282 * 121.37923 * 23 22 4 47 47 H 1.09005 * 110.48364 * 95.09842 * 24 23 22 48 48 H 1.09002 * 110.48724 * 217.73238 * 24 23 22 49 49 H 1.09004 * 110.71911 * 279.56969 * 25 24 23 50 50 H 1.09000 * 110.76497 * 156.22021 * 25 24 23 51 51 H 1.09003 * 110.48582 * 261.57099 * 26 22 4 52 52 H 1.08998 * 110.48423 * 24.07867 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7086 -1.8418 1.0751 6 8 3.0375 -2.4588 2.0660 7 6 3.0718 -2.3623 -0.2918 8 7 3.7094 -3.6793 -0.1606 9 6 2.7336 -4.6988 0.2664 10 6 2.7508 -5.8203 -0.7932 11 6 4.1401 -5.6481 -1.4620 12 8 5.1615 -6.2847 -0.6917 13 6 4.1277 -6.1722 -2.8749 14 1 4.3299 -5.5053 -3.6999 15 6 3.8585 -7.5030 -3.1141 16 7 3.6120 -8.3150 -2.1094 17 14 3.8438 -8.1529 -4.8655 18 1 5.2054 -8.6188 -5.2319 19 1 2.8893 -9.2861 -4.9650 20 1 3.4253 -7.0702 -5.7916 21 6 4.3078 -4.1082 -1.4428 22 6 1.7562 -0.1300 2.5240 23 6 3.0842 0.1665 3.2425 24 6 3.0944 -0.6922 4.5240 25 6 1.5957 -0.9618 4.8116 26 6 1.0050 -1.1593 3.3935 27 1 -0.3633 0.5895 0.8417 28 1 -0.3633 0.4342 -0.9315 29 1 -0.3634 -1.0237 0.0897 30 1 1.8932 -0.5139 -0.8900 31 1 3.1263 1.4438 0.0901 32 1 1.7521 1.9296 -0.9316 33 1 1.6050 1.9816 0.8415 34 1 2.1700 -2.4540 -0.8971 35 1 3.7632 -1.6701 -0.7722 36 1 3.0197 -5.1019 1.2378 37 1 1.7382 -4.2582 0.3239 38 1 2.6696 -6.7989 -0.3200 39 1 1.9523 -5.6755 -1.5208 40 1 5.0437 -7.2396 -0.5949 41 1 3.4221 -9.2513 -2.2778 42 1 3.7744 -3.6580 -2.2799 43 1 5.3639 -3.8411 -1.4769 44 1 1.1684 0.7836 2.4339 45 1 3.9238 -0.1064 2.6031 46 1 3.1410 1.2239 3.5011 47 1 3.6242 -1.6290 4.3514 48 1 3.5488 -0.1422 5.3482 49 1 1.1374 -0.1048 5.3051 50 1 1.4734 -1.8646 5.4101 51 1 -0.0649 -0.9504 3.3934 52 1 1.1951 -2.1714 3.0363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:13 Heat of formation + Delta-G solvation = -100.088338 kcal Electronic energy + Delta-G solvation = -29914.018235 eV Core-core repulsion = 26105.398012 eV Total energy + Delta-G solvation = -3808.620223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62175 -39.98979 -38.10159 -37.10738 -36.29126 -34.18084 -32.37715 -31.95556 -29.93495 -29.62206 -29.27966 -27.96687 -27.39432 -25.79198 -22.94285 -22.36913 -21.68497 -21.48596 -21.34967 -19.26666 -18.88539 -18.09606 -17.38013 -17.03553 -16.84756 -16.60542 -16.04750 -15.73138 -15.70019 -15.25614 -14.99283 -14.91657 -14.37135 -14.28204 -14.16361 -13.95239 -13.60787 -13.52321 -13.25136 -13.14117 -13.03498 -12.89592 -12.81665 -12.64540 -12.47616 -12.30985 -12.23543 -12.20445 -12.09447 -11.95819 -11.88674 -11.79992 -11.76978 -11.67548 -11.38259 -11.12534 -10.61106 -10.37851 -10.08487 -9.53718 -9.13510 -8.20518 -6.37364 1.41435 1.43446 1.52635 1.74793 1.97527 2.38872 3.02712 3.13113 3.53376 3.73693 3.80471 3.83573 3.96251 4.05834 4.08827 4.13578 4.22792 4.29708 4.35730 4.39536 4.43323 4.45549 4.58715 4.65403 4.66690 4.71075 4.78274 4.81733 4.85036 4.88486 4.97368 4.99236 5.05139 5.06329 5.06501 5.17234 5.24760 5.26047 5.32501 5.37325 5.41116 5.45655 5.52678 5.56134 5.78739 5.86116 5.93925 6.13369 6.21431 6.54644 6.69176 7.34326 7.38704 7.44661 8.84955 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.003211 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.925535 B = 8718.909613 C = 9405.083714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 C -0.155 4.155 4 N -0.603 5.603 5 C 0.512 3.488 6 O -0.541 6.541 7 C 0.031 3.969 8 N -0.522 5.522 9 C 0.074 3.926 10 C -0.134 4.134 11 C 0.234 3.766 12 O -0.590 6.590 13 C -0.559 4.559 14 H 0.060 0.940 15 C 0.029 3.971 16 N -0.913 5.913 17 Si 0.962 3.038 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.069 3.931 22 C 0.150 3.850 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.112 4.112 26 C -0.136 4.136 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.371 0.629 41 H 0.268 0.732 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.116 0.884 45 H 0.041 0.959 46 H 0.087 0.913 47 H 0.038 0.962 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.054 0.946 51 H 0.074 0.926 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.901 21.834 6.171 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 C -0.213 4.213 4 N -0.337 5.337 5 C 0.300 3.700 6 O -0.417 6.417 7 C -0.100 4.100 8 N -0.247 5.247 9 C -0.054 4.054 10 C -0.173 4.173 11 C 0.194 3.806 12 O -0.397 6.397 13 C -0.597 4.597 14 H 0.078 0.922 15 C -0.172 4.172 16 N -0.552 5.552 17 Si 0.787 3.213 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.190 1.190 21 C -0.058 4.058 22 C 0.047 3.953 23 C -0.161 4.161 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.174 4.174 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.219 0.781 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.133 0.867 45 H 0.060 0.940 46 H 0.105 0.895 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.106 0.894 50 H 0.073 0.927 51 H 0.093 0.907 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.161 22.020 7.150 24.548 hybrid contribution -0.646 -1.770 -1.443 2.374 sum -8.807 20.250 5.707 22.808 Atomic orbital electron populations 1.22154 0.93855 1.01886 1.03691 1.21478 0.95328 0.94638 0.87085 1.22122 1.01248 0.94145 1.03757 1.48305 1.54684 1.23137 1.07610 1.20617 0.77557 0.80745 0.91085 1.90670 1.53370 1.57726 1.39965 1.22319 0.99906 0.92947 0.94858 1.63218 1.31264 1.01227 1.28956 1.22483 0.92730 0.92314 0.97893 1.23083 0.99850 0.97546 0.96806 1.19810 0.83726 0.88560 0.88516 1.86150 1.52199 1.25532 1.75799 1.21805 1.49449 0.95405 0.93091 0.92154 1.25742 0.93253 0.96960 1.01242 1.69856 1.47672 1.05334 1.32353 0.85500 0.77844 0.77953 0.79956 1.20379 1.20766 1.19044 1.22878 0.98981 0.94881 0.89020 1.21742 0.95863 0.96626 0.81088 1.22411 0.96820 1.00270 0.96590 1.22236 0.97079 0.99130 0.97172 1.22368 0.95136 1.01540 0.95979 1.22708 0.99296 0.99702 0.95722 0.91366 0.89651 0.93895 0.89053 0.92929 0.89639 0.91305 0.91147 0.86783 0.93497 0.93767 0.92846 0.93209 0.78115 0.92295 0.91911 0.91651 0.86662 0.93993 0.89490 0.94312 0.90903 0.89395 0.92705 0.90740 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.19 71.98 0.66 -1.36 16 2 C 0.12 1.79 3.08 44.99 0.14 1.93 16 3 C -0.15 -1.70 9.01 71.98 0.65 -1.05 16 4 N -0.60 -13.15 2.31 -770.05 -1.78 -14.93 16 5 C 0.51 15.72 6.13 87.66 0.54 16.26 16 6 O -0.54 -20.89 11.80 -3.01 -0.04 -20.93 16 7 C 0.03 0.95 3.42 85.56 0.29 1.24 16 8 N -0.52 -21.45 4.82 -890.09 -4.29 -25.74 16 9 C 0.07 3.20 5.78 86.64 0.50 3.71 16 10 C -0.13 -6.51 5.37 31.77 0.17 -6.34 16 11 C 0.23 12.03 0.87 -10.15 -0.01 12.02 16 12 O -0.59 -32.91 13.16 -148.98 -1.96 -34.87 16 13 C -0.56 -30.19 8.27 25.60 0.21 -29.97 16 14 H 0.06 3.17 7.79 -2.91 -0.02 3.15 16 15 C 0.03 1.53 5.29 84.65 0.45 1.97 16 16 N -0.91 -49.99 10.75 21.45 0.23 -49.76 16 17 Si 0.96 42.14 29.54 68.60 2.03 44.16 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 C 0.07 3.05 5.86 86.77 0.51 3.56 16 22 C 0.15 2.90 2.53 45.72 0.12 3.01 16 23 C -0.12 -2.58 5.82 31.32 0.18 -2.39 16 24 C -0.12 -2.75 6.41 31.69 0.20 -2.54 16 25 C -0.11 -2.29 6.91 31.91 0.22 -2.07 16 26 C -0.14 -3.04 6.06 31.67 0.19 -2.85 16 27 H 0.07 0.74 7.48 -2.39 -0.02 0.72 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 1.44 5.77 -2.39 -0.01 1.43 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.63 7.01 -2.39 -0.02 0.61 16 34 H 0.07 1.97 7.22 -2.39 -0.02 1.95 16 35 H 0.11 3.04 8.00 -2.39 -0.02 3.02 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.04 1.75 7.31 -2.38 -0.02 1.74 16 38 H 0.05 2.82 7.54 -2.39 -0.02 2.80 16 39 H 0.05 2.41 8.03 -2.39 -0.02 2.39 16 40 H 0.37 20.98 7.56 -74.06 -0.56 20.42 16 41 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 42 H 0.06 2.50 7.70 -2.39 -0.02 2.48 16 43 H 0.07 2.92 8.14 -2.39 -0.02 2.91 16 44 H 0.12 1.55 6.22 -2.39 -0.01 1.53 16 45 H 0.04 1.12 7.24 -2.39 -0.02 1.10 16 46 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.04 1.20 7.41 -2.38 -0.02 1.18 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.05 1.54 5.90 -2.39 -0.01 1.52 16 Total: -1.00 -66.09 389.73 -0.46 -66.54 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: 0.33 Total: 40.39 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.02 Total: -4.86 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -5.84 Total: -90.43 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -2.00 Total: -55.80 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -66.09 -0.46 -66.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.547 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds