Wall clock time and date at job start Tue Mar 31 2020 15:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47113 * 2 1 4 4 C 1.53000 * 109.47137 * 119.99763 * 2 1 3 5 5 C 1.52999 * 109.47137 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47257 * 299.99952 * 5 4 2 7 7 C 1.53000 * 109.47008 * 59.99969 * 6 5 4 8 8 H 1.09000 * 109.46925 * 59.99983 * 7 6 5 9 9 O 1.42904 * 109.47012 * 180.02562 * 7 6 5 10 10 C 1.42904 * 113.99767 * 270.00054 * 9 7 6 11 11 C 1.50691 * 109.46938 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00210 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99899 * 180.02562 * 11 10 9 14 14 C 1.47087 * 120.86420 * 0.02562 * 13 11 10 15 15 C 1.53238 * 108.51950 * 231.12573 * 14 13 11 16 16 N 1.46902 * 109.35988 * 306.20864 * 15 14 13 17 17 C 1.46899 * 110.99794 * 187.24640 * 16 15 14 18 18 C 1.50698 * 109.47014 * 170.00124 * 17 16 15 19 19 H 1.08002 * 120.00134 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00145 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99800 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99696 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47065 * 90.00656 * 22 20 18 24 24 H 1.48502 * 109.47185 * 210.00638 * 22 20 18 25 25 H 1.48504 * 109.47241 * 330.00061 * 22 20 18 26 26 C 1.46895 * 111.27009 * 63.09193 * 16 15 14 27 27 C 1.47085 * 120.88162 * 180.02562 * 13 11 10 28 28 C 1.52998 * 109.47257 * 239.99715 * 2 1 3 29 29 H 1.09001 * 109.47165 * 300.00182 * 1 2 3 30 30 H 1.09005 * 109.47082 * 60.00470 * 1 2 3 31 31 H 1.09000 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47264 * 59.99706 * 4 2 1 33 33 H 1.09001 * 109.47138 * 300.00071 * 4 2 1 34 34 H 1.09005 * 109.47082 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47113 * 60.00237 * 5 4 2 36 36 H 1.09001 * 109.46783 * 300.00073 * 6 5 4 37 37 H 1.08995 * 109.47099 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47221 * 59.99866 * 10 9 7 39 39 H 1.09005 * 109.46852 * 299.99883 * 10 9 7 40 40 H 1.08993 * 109.60710 * 111.42457 * 14 13 11 41 41 H 1.09004 * 109.64561 * 350.84174 * 14 13 11 42 42 H 1.09002 * 109.49281 * 186.23383 * 15 14 13 43 43 H 1.08996 * 109.49310 * 66.17887 * 15 14 13 44 44 H 1.09006 * 109.46961 * 289.99318 * 17 16 15 45 45 H 1.08996 * 109.47873 * 49.99329 * 17 16 15 46 46 H 0.97008 * 119.99555 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.49171 * 56.85827 * 26 16 15 48 48 H 1.08997 * 109.49262 * 176.91018 * 26 16 15 49 49 H 1.08998 * 109.62892 * 9.13922 * 27 13 11 50 50 H 1.09004 * 109.78626 * 248.66114 * 27 13 11 51 51 H 1.09005 * 109.47226 * 59.99902 * 28 2 1 52 52 H 1.09000 * 109.47291 * 300.00176 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 1 3.9332 0.3053 -1.2497 9 8 4.0449 -1.3966 -2.4163 10 6 5.3047 -0.9179 -2.8915 11 6 5.7070 -1.6951 -4.1183 12 8 4.9861 -2.5728 -4.5436 13 7 6.8684 -1.4154 -4.7423 14 6 7.7578 -0.3562 -4.2420 15 6 8.1056 0.5775 -5.4062 16 7 8.6460 -0.2133 -6.5201 17 6 9.1507 0.6590 -7.5888 18 6 9.9125 -0.1666 -8.5933 19 1 10.0122 -1.2327 -8.4517 20 6 10.4833 0.4391 -9.6926 21 7 11.1485 -0.2814 -10.5689 22 14 10.3116 2.2831 -9.9371 23 1 11.4455 2.9777 -9.2762 24 1 10.3202 2.5927 -11.3895 25 1 9.0325 2.7446 -9.3402 26 6 7.6461 -1.1564 -7.0384 27 6 7.2797 -2.1613 -5.9414 28 6 2.0400 -0.7213 -1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6766 -1.7489 1.2494 33 1 1.6767 -0.2073 2.1392 34 1 3.9333 -1.2352 2.1392 35 1 3.9337 0.3058 1.2487 36 1 3.7157 -2.4710 0.0001 37 1 5.1694 -1.4442 -0.0002 38 1 6.0589 -1.0476 -2.1153 39 1 5.2202 0.1393 -3.1430 40 1 8.6698 -0.8017 -3.8449 41 1 7.2514 0.2081 -3.4589 42 1 8.8507 1.3033 -5.0803 43 1 7.2072 1.1006 -5.7338 44 1 8.3125 1.1502 -8.0832 45 1 9.8123 1.4123 -7.1611 46 1 11.5498 0.1448 -11.3425 47 1 6.7539 -0.6095 -7.3431 48 1 8.0577 -1.6878 -7.8964 49 1 6.4572 -2.7906 -6.2813 50 1 8.1449 -2.7829 -5.7106 51 1 1.6767 -0.2075 -2.1392 52 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:23 Heat of formation + Delta-G solvation = -110.716914 kcal Electronic energy + Delta-G solvation = -28066.848133 eV Core-core repulsion = 24257.767021 eV Total energy + Delta-G solvation = -3809.081112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34160 -40.22720 -39.03345 -37.55885 -36.02619 -34.43061 -33.22749 -32.45447 -31.26583 -30.60345 -28.65475 -27.29949 -27.01091 -24.58598 -23.52765 -23.33931 -22.26678 -21.99138 -20.79159 -19.97136 -18.95516 -18.46785 -17.56843 -17.10263 -16.99027 -16.47522 -16.18465 -16.06240 -15.68221 -15.65217 -15.55573 -15.17001 -15.11510 -14.69297 -14.47670 -14.39418 -14.06777 -13.71565 -13.63796 -13.37612 -13.28670 -13.19340 -12.88036 -12.74414 -12.53352 -12.41122 -12.31514 -12.23368 -11.96534 -11.93610 -11.86530 -11.83341 -11.45907 -11.41406 -11.31336 -11.26902 -10.81213 -10.75419 -10.42413 -9.82814 -9.07520 -8.27815 -6.31601 1.35373 1.37431 1.47232 1.49724 1.64693 2.34611 2.75365 3.04317 3.14144 3.45978 3.74367 3.80009 3.93610 4.00289 4.03430 4.10873 4.14575 4.18478 4.22535 4.23951 4.26771 4.30488 4.41759 4.52714 4.53802 4.54666 4.65693 4.70277 4.77706 4.80123 4.84108 4.85021 4.94231 4.98951 4.99419 5.06498 5.10424 5.11581 5.15248 5.30329 5.30864 5.38618 5.39911 5.41034 5.52130 5.57605 5.91818 6.14893 6.25444 6.39222 6.62359 6.75097 7.07411 7.31949 8.88538 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.002102 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.825667 B =13317.661819 C =13583.611418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.081 0.919 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.140 4.140 7 C 0.085 3.915 8 H 0.082 0.918 9 O -0.391 6.391 10 C 0.051 3.949 11 C 0.509 3.491 12 O -0.578 6.578 13 N -0.609 5.609 14 C 0.115 3.885 15 C 0.032 3.968 16 N -0.539 5.539 17 C 0.172 3.828 18 C -0.518 4.518 19 H 0.039 0.961 20 C 0.006 3.994 21 N -0.948 5.948 22 Si 0.949 3.051 23 H -0.261 1.261 24 H -0.286 1.286 25 H -0.252 1.252 26 C 0.059 3.941 27 C 0.127 3.873 28 C -0.111 4.111 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.030 0.970 44 H -0.016 1.016 45 H 0.039 0.961 46 H 0.266 0.734 47 H 0.018 0.982 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.060 0.940 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.914 5.724 27.954 33.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.178 4.178 7 C 0.028 3.972 8 H 0.100 0.900 9 O -0.310 6.310 10 C -0.028 4.028 11 C 0.298 3.702 12 O -0.457 6.457 13 N -0.343 5.343 14 C -0.007 4.007 15 C -0.097 4.097 16 N -0.264 5.264 17 C 0.045 3.955 18 C -0.556 4.556 19 H 0.057 0.943 20 C -0.192 4.192 21 N -0.588 5.588 22 Si 0.772 3.228 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.176 1.176 26 C -0.070 4.070 27 C 0.004 3.996 28 C -0.149 4.149 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.048 0.952 44 H 0.002 0.998 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.037 0.963 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.079 0.921 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.918 4.852 27.684 32.805 hybrid contribution -0.183 0.748 -1.444 1.636 sum -17.101 5.600 26.240 31.818 Atomic orbital electron populations 1.21820 0.94555 1.01862 1.02225 1.21080 0.96007 0.99702 0.93461 0.90112 1.21650 0.95516 1.00609 0.97646 1.21483 0.95592 1.01202 0.96758 1.22038 1.01131 0.99943 0.94709 1.22365 0.94898 0.96041 0.83877 0.90037 1.88030 1.35489 1.61756 1.45729 1.22364 0.88397 0.98094 0.93929 1.21005 0.80091 0.83618 0.85502 1.90683 1.53001 1.34495 1.67565 1.48265 1.20355 1.37231 1.28467 1.22147 0.94754 0.87868 0.95940 1.22654 0.99085 0.95898 0.92059 1.61799 1.35214 1.19230 1.10168 1.19942 0.93759 0.92394 0.89371 1.21270 1.32766 0.95373 1.06181 0.94270 1.25876 0.94453 1.03493 0.95332 1.70057 1.37062 1.38179 1.13543 0.85692 0.79955 0.79609 0.77509 1.18565 1.21196 1.17589 1.22203 0.92667 0.94958 0.97195 1.21541 1.00032 0.93725 0.84285 1.21647 0.93266 1.01182 0.98802 0.91419 0.92761 0.93084 0.92575 0.90513 0.90873 0.90667 0.92728 0.91133 0.87220 0.87598 0.89179 0.85621 0.87836 0.95175 0.99828 0.94302 0.92486 0.96337 0.91160 0.90152 0.90472 0.92081 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.19 71.98 0.66 -0.82 16 2 C -0.08 -0.90 2.72 -10.79 -0.03 -0.93 16 3 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.12 -1.11 5.20 30.59 0.16 -0.95 16 5 C -0.11 -1.03 5.92 30.59 0.18 -0.85 16 6 C -0.14 -1.87 5.54 30.59 0.17 -1.70 16 7 C 0.09 1.33 2.61 30.58 0.08 1.41 16 8 H 0.08 0.93 7.79 -2.39 -0.02 0.91 16 9 O -0.39 -9.26 9.52 -129.94 -1.24 -10.49 16 10 C 0.05 0.97 4.59 71.23 0.33 1.30 16 11 C 0.51 14.67 7.78 87.65 0.68 15.35 16 12 O -0.58 -22.55 15.95 16.01 0.26 -22.29 16 13 N -0.61 -16.71 3.01 -817.98 -2.46 -19.17 16 14 C 0.11 2.33 6.50 86.35 0.56 2.89 16 15 C 0.03 0.85 5.62 86.38 0.49 1.34 16 16 N -0.54 -20.74 4.62 -899.91 -4.16 -24.89 16 17 C 0.17 7.86 3.79 85.56 0.32 8.18 16 18 C -0.52 -29.20 8.96 25.60 0.23 -28.97 16 19 H 0.04 2.47 7.37 -2.91 -0.02 2.45 16 20 C 0.01 0.33 5.47 84.66 0.46 0.79 16 21 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 22 Si 0.95 43.00 27.47 68.60 1.88 44.88 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 26 C 0.06 2.27 5.46 86.37 0.47 2.74 16 27 C 0.13 4.20 6.60 86.34 0.57 4.77 16 28 C -0.11 -1.75 4.85 30.58 0.15 -1.60 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.84 7.87 -2.39 -0.02 0.82 16 38 H 0.11 1.38 7.73 -2.39 -0.02 1.36 16 39 H 0.11 1.41 7.61 -2.38 -0.02 1.39 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.13 1.40 6.02 -2.39 -0.01 1.39 16 42 H 0.10 2.41 7.99 -2.39 -0.02 2.39 16 43 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 44 H -0.02 -0.74 7.18 -2.38 -0.02 -0.76 16 45 H 0.04 1.68 7.40 -2.39 -0.02 1.67 16 46 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 47 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 48 H 0.07 3.14 6.67 -2.39 -0.02 3.12 16 49 H 0.08 2.81 7.06 -2.39 -0.02 2.79 16 50 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 51 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 52 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -75.62 397.22 0.87 -74.75 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.81 Total: 12.70 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.48 Total: 2.95 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -6.32 Total: -102.50 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.98 Total: -32.79 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.88 kcal Total: -75.62 0.87 -74.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.963 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds