Wall clock time and date at job start Tue Mar 31 2020 15:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.87400 * 2 1 4 4 O 1.43744 * 109.87672 * 238.83488 * 2 1 3 5 5 C 1.44379 * 106.97854 * 214.06240 * 4 2 1 6 6 C 1.55000 * 103.48841 * 40.05960 * 5 4 2 7 7 C 1.54106 * 109.88167 * 121.00456 * 2 1 3 8 8 C 1.52999 * 110.48596 * 2.77806 * 7 2 1 9 9 C 1.50697 * 110.48867 * 240.26225 * 7 2 1 10 10 O 1.21282 * 119.99930 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99951 * 180.02562 * 9 7 2 12 12 C 1.46504 * 119.99552 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.46603 * 176.62942 * 12 11 9 14 14 N 1.46506 * 109.47485 * 54.62942 * 13 12 11 15 15 C 1.36931 * 119.99944 * 62.80706 * 14 13 12 16 16 H 1.08006 * 120.00411 * 354.24609 * 15 14 13 17 17 C 1.38809 * 120.00059 * 174.24897 * 15 14 13 18 18 N 1.31613 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46977 * 59.99863 * 19 17 15 21 21 H 1.48505 * 109.47185 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47446 * 300.00140 * 19 17 15 23 23 C 1.53003 * 109.47446 * 294.62790 * 13 12 11 24 24 C 1.52996 * 109.47446 * 180.02562 * 23 13 12 25 25 C 1.53005 * 109.46987 * 59.99951 * 24 23 13 26 26 C 1.52990 * 109.47277 * 300.00165 * 25 24 23 27 27 C 1.52999 * 109.47381 * 59.99654 * 26 25 24 28 28 H 1.09004 * 109.46998 * 298.99182 * 1 2 3 29 29 H 1.09001 * 109.47215 * 178.99814 * 1 2 3 30 30 H 1.08991 * 109.47578 * 58.99277 * 1 2 3 31 31 H 1.09005 * 110.61875 * 281.56430 * 5 4 2 32 32 H 1.08995 * 110.62232 * 158.56135 * 5 4 2 33 33 H 1.09003 * 110.90641 * 204.77782 * 6 5 4 34 34 H 1.09000 * 110.90893 * 81.18115 * 6 5 4 35 35 H 1.08998 * 109.47154 * 59.99855 * 8 7 2 36 36 H 1.08998 * 109.46991 * 180.02562 * 8 7 2 37 37 H 1.09004 * 109.46905 * 299.99727 * 8 7 2 38 38 H 0.96995 * 119.99557 * 359.97438 * 11 9 7 39 39 H 1.08999 * 109.47065 * 296.62450 * 12 11 9 40 40 H 1.08994 * 109.47136 * 56.63150 * 12 11 9 41 41 H 0.96998 * 120.00022 * 242.81246 * 14 13 12 42 42 H 0.96998 * 120.00675 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.46874 * 300.00545 * 23 13 12 44 44 H 1.09005 * 109.46806 * 59.99830 * 23 13 12 45 45 H 1.09004 * 109.47529 * 300.00144 * 24 23 13 46 46 H 1.09003 * 109.47326 * 180.02562 * 24 23 13 47 47 H 1.08997 * 109.47303 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.46580 * 60.00227 * 25 24 23 49 49 H 1.09008 * 109.47486 * 299.99930 * 26 25 24 50 50 H 1.08998 * 109.47396 * 180.02562 * 26 25 24 51 51 H 1.09003 * 109.47461 * 180.02562 * 27 26 25 52 52 H 1.09004 * 109.47184 * 60.00119 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6996 -1.1567 5 6 3.2378 -1.3653 -0.7629 6 6 2.9195 -1.8906 0.6602 7 6 2.0540 -0.7465 1.2422 8 6 0.8899 -1.3162 2.0553 9 6 2.8919 0.1713 2.0946 10 8 3.0663 1.3226 1.7556 11 7 3.4483 -0.2877 3.2332 12 6 4.2623 0.6048 4.0621 13 6 4.7009 -0.1341 5.3281 14 7 5.3792 -1.3785 4.9571 15 6 6.5433 -1.3355 4.2373 16 1 6.9125 -0.3919 3.8634 17 6 7.2489 -2.5046 3.9882 18 7 6.7994 -3.6544 4.4442 19 14 8.8366 -2.4459 3.0058 20 1 9.8181 -1.5760 3.7026 21 1 9.3925 -3.8174 2.8810 22 1 8.5620 -1.8976 1.6533 23 6 3.4726 -0.4575 6.1812 24 6 3.9112 -1.1958 7.4474 25 6 4.8694 -0.3111 8.2476 26 6 6.0975 0.0123 7.3946 27 6 5.6590 0.7505 6.1283 28 1 -0.3633 0.4981 0.8989 29 1 -0.3634 -1.0275 -0.0180 30 1 -0.3634 0.5293 -0.8807 31 1 4.0685 -0.6600 -0.7348 32 1 3.4583 -2.1928 -1.4371 33 1 3.8332 -2.0208 1.2402 34 1 2.3539 -2.8212 0.6138 35 1 0.3214 -2.0116 1.4378 36 1 1.2787 -1.8395 2.9288 37 1 0.2403 -0.5028 2.3788 38 1 3.3090 -1.2086 3.5040 39 1 5.1427 0.9189 3.5015 40 1 3.6753 1.4808 4.3377 41 1 5.0036 -2.2330 5.2212 42 1 7.2926 -4.4714 4.2705 43 1 2.9680 0.4684 6.4572 44 1 2.7898 -1.0874 5.6109 45 1 4.4162 -2.1217 7.1718 46 1 3.0362 -1.4266 8.0550 47 1 5.1815 -0.8369 9.1499 48 1 4.3644 0.6147 8.5233 49 1 6.6025 -0.9136 7.1188 50 1 6.7804 0.6422 7.9647 51 1 6.5340 0.9806 5.5203 52 1 5.1540 1.6764 6.4039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115645842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:36 Heat of formation + Delta-G solvation = -91.285803 kcal Electronic energy + Delta-G solvation = -30434.218917 eV Core-core repulsion = 26625.980401 eV Total energy + Delta-G solvation = -3808.238516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69048 -39.06133 -37.85276 -34.52057 -33.96448 -33.25463 -31.62462 -30.94980 -30.26333 -28.61576 -27.62520 -25.90157 -24.91663 -23.82552 -22.46772 -22.15891 -21.26280 -20.31986 -19.02408 -18.30220 -17.44002 -17.05364 -15.88422 -15.74806 -15.31318 -15.12480 -14.84513 -14.46124 -14.25986 -14.01213 -14.00151 -13.70549 -13.61726 -13.21531 -12.87786 -12.76576 -12.57873 -12.22112 -11.98175 -11.92448 -11.73435 -11.68499 -11.58715 -11.34819 -11.17141 -11.09832 -10.89875 -10.84374 -10.80465 -10.66671 -10.57300 -10.23759 -10.07287 -9.84466 -9.68153 -9.59171 -9.35913 -9.25828 -8.91074 -8.47519 -7.05557 -5.84943 -3.13891 2.96493 3.38444 3.43778 3.45485 3.57622 3.93189 4.48263 4.52383 4.73873 4.82480 5.08562 5.16658 5.20732 5.23168 5.25658 5.28446 5.37476 5.51358 5.52665 5.56721 5.60642 5.69020 5.71373 5.72430 5.79580 5.83559 5.91289 5.94818 6.01082 6.03652 6.08748 6.10736 6.13510 6.15985 6.17398 6.25858 6.27574 6.42198 6.46897 6.56330 6.76298 6.78044 6.78819 6.95100 6.97748 7.04972 7.17625 7.66676 8.00647 8.33091 8.62848 9.45715 9.98306 10.35188 11.36757 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004954 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.303654 B = 5650.088356 C = 7232.855313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.084 3.916 3 H 0.092 0.908 4 O -0.376 6.376 5 C 0.048 3.952 6 C -0.144 4.144 7 C -0.112 4.112 8 C -0.135 4.135 9 C 0.522 3.478 10 O -0.554 6.554 11 N -0.694 5.694 12 C 0.115 3.885 13 C 0.191 3.809 14 N -0.709 5.709 15 C -0.230 4.230 16 H 0.068 0.932 17 C -0.006 4.006 18 N -0.931 5.931 19 Si 0.898 3.102 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.288 1.288 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.109 4.109 27 C -0.114 4.114 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.403 0.597 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.083 0.917 50 H 0.043 0.957 51 H 0.063 0.937 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 3.842 -0.140 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 H 0.109 0.891 4 O -0.295 6.295 5 C -0.028 4.028 6 C -0.182 4.182 7 C -0.115 4.115 8 C -0.192 4.192 9 C 0.307 3.693 10 O -0.433 6.433 11 N -0.343 5.343 12 C -0.012 4.012 13 C 0.099 3.901 14 N -0.351 5.351 15 C -0.361 4.361 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.729 3.271 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.154 4.154 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.240 0.760 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.102 0.898 50 H 0.062 0.938 51 H 0.082 0.918 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.322 4.667 -0.636 12.262 hybrid contribution 1.093 -0.760 -0.129 1.338 sum -10.228 3.907 -0.765 10.976 Atomic orbital electron populations 1.22014 0.93857 1.02554 1.02162 1.22763 0.94768 0.96986 0.82895 0.89063 1.88825 1.39715 1.67831 1.33161 1.23516 0.87836 0.96428 0.95054 1.23281 1.00882 0.97238 0.96816 1.22087 0.96675 0.96170 0.96613 1.21924 0.96549 1.01131 0.99619 1.20087 0.79966 0.87851 0.81421 1.90631 1.62188 1.18921 1.71544 1.45734 1.50242 1.15680 1.22691 1.21888 0.94111 0.91943 0.93228 1.19818 0.91260 0.88748 0.90298 1.42430 1.26431 1.01569 1.64656 1.19012 0.98763 0.93276 1.25085 0.91452 1.24644 0.98674 0.95619 1.01326 1.69624 1.40271 0.97549 1.50442 0.86414 0.84153 0.76424 0.80066 1.21351 1.21838 1.21433 1.21683 0.97135 0.99888 0.96382 1.21472 0.98276 0.99760 0.95774 1.21465 0.96886 0.98758 0.97860 1.21367 0.96543 1.01719 0.95051 1.21787 0.99750 0.96939 0.96937 0.91155 0.91744 0.92179 0.91970 0.88798 0.88648 0.89544 0.91030 0.91857 0.91654 0.76040 0.91849 0.92935 0.78075 0.93542 0.92320 0.92538 0.90716 0.93315 0.93044 0.93268 0.89816 0.93806 0.91786 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.40 37.16 0.31 -1.35 16 2 C 0.08 1.19 3.67 -26.16 -0.10 1.10 16 3 H 0.09 1.51 6.43 -51.93 -0.33 1.17 16 4 O -0.38 -5.69 11.19 -35.23 -0.39 -6.08 16 5 C 0.05 0.68 7.72 38.21 0.29 0.97 16 6 C -0.14 -1.98 6.25 -24.72 -0.15 -2.14 16 7 C -0.11 -1.54 0.82 -154.13 -0.13 -1.67 16 8 C -0.13 -1.48 7.19 37.16 0.27 -1.21 16 9 C 0.52 8.80 6.45 -10.99 -0.07 8.73 16 10 O -0.55 -11.10 15.25 5.56 0.08 -11.01 16 11 N -0.69 -11.44 4.84 -60.30 -0.29 -11.73 16 12 C 0.11 2.00 4.37 -4.04 -0.02 1.99 16 13 C 0.19 3.25 0.41 -131.82 -0.05 3.20 16 14 N -0.71 -14.65 3.41 -47.23 -0.16 -14.81 16 15 C -0.23 -5.58 8.70 -15.06 -0.13 -5.71 16 16 H 0.07 1.67 6.77 -52.48 -0.36 1.32 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.93 -25.41 13.07 55.49 0.73 -24.69 16 19 Si 0.90 21.37 29.55 -169.99 -5.02 16.34 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.11 -1.65 4.65 -26.73 -0.12 -1.77 16 24 C -0.12 -1.68 5.75 -26.73 -0.15 -1.83 16 25 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 26 C -0.11 -1.80 5.77 -26.74 -0.15 -1.96 16 27 C -0.11 -1.92 4.52 -26.73 -0.12 -2.04 16 28 H 0.07 0.71 6.83 -51.93 -0.35 0.36 16 29 H 0.06 0.66 6.71 -51.93 -0.35 0.31 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.50 7.75 -51.93 -0.40 1.09 16 34 H 0.09 1.04 7.85 -51.93 -0.41 0.63 16 35 H 0.07 0.69 6.80 -51.93 -0.35 0.33 16 36 H 0.06 0.67 7.44 -51.93 -0.39 0.29 16 37 H 0.06 0.67 6.72 -51.93 -0.35 0.32 16 38 H 0.40 6.46 6.69 -40.82 -0.27 6.19 16 39 H 0.06 1.28 7.50 -51.93 -0.39 0.89 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.38 8.57 6.63 -40.82 -0.27 8.30 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.80 7.28 -51.93 -0.38 0.42 16 45 H 0.07 1.27 6.92 -51.93 -0.36 0.91 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.68 7.61 -51.92 -0.39 1.28 16 50 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.06 1.19 7.23 -51.93 -0.38 0.82 16 52 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -27.90 387.60 -8.90 -36.80 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -9.09 Total: 15.06 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.58 Total: -5.72 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.27 Total: -51.23 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.31 Total: -17.10 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.90 -8.90 -36.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115645842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.484 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds