Wall clock time and date at job start Tue Mar 31 2020 15:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.87172 * 2 1 4 4 O 1.43746 * 109.87662 * 121.16101 * 2 1 3 5 5 C 1.44379 * 106.97355 * 145.94276 * 4 2 1 6 6 C 1.55352 * 103.50093 * 319.90424 * 5 4 2 7 7 C 1.54100 * 109.88403 * 238.99561 * 2 1 3 8 8 C 1.53006 * 110.48459 * 357.35378 * 7 2 1 9 9 C 1.50697 * 110.49191 * 119.86935 * 7 2 1 10 10 O 1.21285 * 119.99901 * 358.15919 * 9 7 2 11 11 N 1.34776 * 120.00237 * 178.15677 * 9 7 2 12 12 C 1.46500 * 119.99985 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46908 * 176.79439 * 12 11 9 14 14 N 1.46502 * 109.47234 * 54.61423 * 13 12 11 15 15 C 1.36934 * 119.99970 * 62.64528 * 14 13 12 16 16 H 1.08000 * 120.00032 * 354.96970 * 15 14 13 17 17 C 1.38810 * 120.00093 * 174.95882 * 15 14 13 18 18 N 1.31624 * 120.00096 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00003 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46686 * 269.99777 * 19 17 15 21 21 H 1.48496 * 109.47295 * 149.99734 * 19 17 15 22 22 H 1.48505 * 109.47138 * 29.99050 * 19 17 15 23 23 C 1.52999 * 109.47074 * 174.61699 * 13 12 11 24 24 C 1.52997 * 109.46976 * 180.02562 * 23 13 12 25 25 C 1.53005 * 109.46816 * 299.99674 * 24 23 13 26 26 C 1.52999 * 109.47081 * 60.00391 * 25 24 23 27 27 C 1.52994 * 109.47105 * 299.99867 * 26 25 24 28 28 H 1.08996 * 109.47189 * 181.00407 * 1 2 3 29 29 H 1.08994 * 109.47705 * 301.01078 * 1 2 3 30 30 H 1.09002 * 109.46842 * 61.00561 * 1 2 3 31 31 H 1.08995 * 110.62402 * 78.44039 * 5 4 2 32 32 H 1.09008 * 110.61647 * 201.28049 * 5 4 2 33 33 H 1.08999 * 110.95928 * 278.92328 * 6 5 4 34 34 H 1.09005 * 111.00549 * 155.21124 * 6 5 4 35 35 H 1.09004 * 109.47010 * 181.84645 * 8 7 2 36 36 H 1.08996 * 109.46972 * 301.84690 * 8 7 2 37 37 H 1.08992 * 109.46868 * 61.84808 * 8 7 2 38 38 H 0.97004 * 119.99635 * 359.97438 * 11 9 7 39 39 H 1.08995 * 109.47042 * 56.79393 * 12 11 9 40 40 H 1.09002 * 109.47003 * 296.78754 * 12 11 9 41 41 H 0.97003 * 120.00066 * 242.65418 * 14 13 12 42 42 H 0.96993 * 119.99733 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.46529 * 299.99821 * 23 13 12 44 44 H 1.09000 * 109.46969 * 59.99901 * 23 13 12 45 45 H 1.09001 * 109.47113 * 180.02562 * 24 23 13 46 46 H 1.09000 * 109.47416 * 60.00097 * 24 23 13 47 47 H 1.09001 * 109.47198 * 299.99659 * 25 24 23 48 48 H 1.09002 * 109.46470 * 180.02562 * 25 24 23 49 49 H 1.09001 * 109.46529 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.46969 * 59.99688 * 26 25 24 51 51 H 1.09001 * 109.47125 * 300.00311 * 27 26 25 52 52 H 1.08999 * 109.47442 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0187 -0.6995 1.1568 5 6 3.2379 -1.3651 0.7630 6 6 2.9188 -1.8926 -0.6630 7 6 2.0541 -0.7465 -1.2421 8 6 0.8898 -1.3134 -2.0570 9 6 2.8946 0.1704 -2.0929 10 8 3.0430 1.3302 -1.7706 11 7 3.4815 -0.2984 -3.2119 12 6 4.2991 0.5928 -4.0387 13 6 4.9092 -0.2016 -5.1953 14 7 3.8440 -0.8830 -5.9353 15 6 2.8759 -0.1519 -6.5704 16 1 2.8500 0.9220 -6.4590 17 6 1.9279 -0.7911 -7.3574 18 7 0.9976 -0.0883 -7.9683 19 14 1.9723 -2.6487 -7.5497 20 1 2.8190 -3.0053 -8.7164 21 1 0.5938 -3.1572 -7.7645 22 1 2.5397 -3.2600 -6.3210 23 6 5.6521 0.7521 -6.1331 24 6 6.2616 -0.0422 -7.2900 25 6 7.2411 -1.0791 -6.7364 26 6 6.4982 -2.0328 -5.7986 27 6 5.8886 -1.2386 -4.6418 28 1 -0.3633 -1.0275 0.0180 29 1 -0.3634 0.5294 0.8807 30 1 -0.3633 0.4981 -0.8989 31 1 4.0684 -0.6598 0.7348 32 1 3.4599 -2.1909 1.4389 33 1 2.3520 -2.8224 -0.6170 34 1 3.8315 -2.0232 -1.2446 35 1 1.2797 -1.8651 -2.9125 36 1 0.3002 -1.9830 -1.4309 37 1 0.2601 -0.4960 -2.4082 38 1 3.3632 -1.2261 -3.4695 39 1 5.0965 1.0214 -3.4318 40 1 3.6752 1.3930 -4.4369 41 1 3.8245 -1.8520 -5.9752 42 1 0.3349 -0.5351 -8.5180 43 1 4.9542 1.4905 -6.5278 44 1 6.4446 1.2589 -5.5826 45 1 6.7913 0.6371 -7.9579 46 1 5.4689 -0.5488 -7.8405 47 1 8.0340 -0.5725 -6.1861 48 1 7.6757 -1.6447 -7.5607 49 1 7.1960 -2.7717 -5.4047 50 1 5.7055 -2.5394 -6.3491 51 1 6.6814 -0.7319 -4.0914 52 1 5.3597 -1.9180 -3.9734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115645843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:39 Heat of formation + Delta-G solvation = -86.476794 kcal Electronic energy + Delta-G solvation = -30474.282932 eV Core-core repulsion = 26666.252950 eV Total energy + Delta-G solvation = -3808.029982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76274 -39.21212 -37.94003 -34.61410 -34.00909 -33.30171 -31.70400 -31.14448 -30.39781 -29.21857 -27.63769 -25.94694 -24.96592 -23.52509 -22.65172 -22.26759 -21.32951 -20.39048 -19.08883 -18.30657 -17.82927 -17.41446 -16.02001 -15.73782 -15.39967 -15.08896 -14.96967 -14.63143 -14.38091 -14.14028 -14.02670 -13.72879 -13.54948 -13.42448 -12.83597 -12.69661 -12.58424 -12.39124 -12.27688 -12.01986 -11.96324 -11.72690 -11.63754 -11.44532 -11.29594 -11.19917 -11.02792 -10.91365 -10.87206 -10.73678 -10.66814 -10.37262 -10.06664 -9.94016 -9.72239 -9.68135 -9.41655 -9.32860 -8.96858 -8.52879 -7.36717 -5.82901 -3.20026 2.92195 3.24483 3.30368 3.37841 3.51357 3.82446 4.36950 4.50075 4.66335 4.74017 4.97165 4.98373 5.08805 5.09975 5.13964 5.15598 5.28737 5.41145 5.47651 5.49217 5.50244 5.57363 5.61873 5.66801 5.70412 5.76544 5.81466 5.85265 5.86961 5.95511 5.97817 6.01420 6.04230 6.07693 6.14272 6.19096 6.28527 6.34178 6.40283 6.45862 6.54476 6.66437 6.68128 6.87437 6.89683 6.96607 7.04463 7.90854 7.94755 8.35446 8.57666 9.12399 9.84072 10.03219 11.35163 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.004741 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.254629 B = 5904.506689 C = 6993.250854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.085 3.915 3 H 0.093 0.907 4 O -0.374 6.374 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.112 4.112 8 C -0.137 4.137 9 C 0.523 3.477 10 O -0.550 6.550 11 N -0.696 5.696 12 C 0.116 3.884 13 C 0.197 3.803 14 N -0.736 5.736 15 C -0.234 4.234 16 H 0.091 0.909 17 C 0.009 3.991 18 N -0.931 5.931 19 Si 0.878 3.122 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.280 1.280 23 C -0.114 4.114 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.117 4.117 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.598 -5.498 12.038 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 H 0.111 0.889 4 O -0.294 6.294 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.115 4.115 8 C -0.194 4.194 9 C 0.308 3.692 10 O -0.428 6.428 11 N -0.346 5.346 12 C -0.010 4.010 13 C 0.106 3.894 14 N -0.380 5.380 15 C -0.364 4.364 16 H 0.109 0.891 17 C -0.187 4.187 18 N -0.578 5.578 19 Si 0.709 3.291 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.207 1.207 23 C -0.154 4.154 24 C -0.147 4.147 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.155 4.155 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.459 -4.488 12.329 15.092 hybrid contribution -0.106 -1.806 -0.733 1.952 sum 7.353 -6.295 11.596 15.104 Atomic orbital electron populations 1.22027 0.93568 1.02662 1.02496 1.22789 0.95117 0.96908 0.82494 0.88895 1.88846 1.39390 1.67818 1.33310 1.23548 0.88173 0.96321 0.94795 1.23322 1.00176 0.97880 0.96745 1.22108 0.96854 0.95859 0.96709 1.21935 0.96510 1.01593 0.99391 1.20061 0.79636 0.88021 0.81482 1.90643 1.62194 1.18068 1.71914 1.45704 1.50312 1.14869 1.23689 1.21866 0.93846 0.93445 0.91857 1.19778 0.87886 0.91696 0.90046 1.42850 1.28622 1.04284 1.62250 1.18917 1.03539 0.92967 1.20993 0.89128 1.24632 0.98078 0.96593 0.99359 1.69689 1.18364 1.34087 1.35661 0.86677 0.76821 0.87802 0.77770 1.21205 1.22002 1.20661 1.21765 0.98607 0.98291 0.96701 1.21373 0.98419 0.97232 0.97707 1.21502 0.97878 0.97447 0.98381 1.21475 0.99430 0.97594 0.96820 1.21740 0.98366 0.97970 0.97436 0.91726 0.92140 0.90757 0.92170 0.88921 0.89399 0.89860 0.91555 0.91166 0.91102 0.76474 0.92708 0.91218 0.80491 0.93113 0.91111 0.93448 0.93340 0.90241 0.92857 0.92918 0.92963 0.91705 0.91727 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.40 37.16 0.31 -1.50 16 2 C 0.08 1.18 3.67 -26.16 -0.10 1.09 16 3 H 0.09 1.51 6.44 -51.93 -0.33 1.18 16 4 O -0.37 -5.18 11.19 -35.23 -0.39 -5.57 16 5 C 0.05 0.54 7.73 38.41 0.30 0.84 16 6 C -0.14 -1.57 6.27 -24.53 -0.15 -1.72 16 7 C -0.11 -1.51 0.81 -154.13 -0.13 -1.64 16 8 C -0.14 -1.78 7.17 37.16 0.27 -1.51 16 9 C 0.52 8.70 6.46 -10.99 -0.07 8.63 16 10 O -0.55 -10.95 15.26 5.55 0.08 -10.87 16 11 N -0.70 -11.21 4.77 -60.29 -0.29 -11.49 16 12 C 0.12 1.98 4.36 -4.04 -0.02 1.97 16 13 C 0.20 3.23 0.41 -131.82 -0.05 3.18 16 14 N -0.74 -14.53 3.21 -47.23 -0.15 -14.69 16 15 C -0.23 -5.80 9.19 -15.06 -0.14 -5.94 16 16 H 0.09 2.51 7.00 -52.49 -0.37 2.14 16 17 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 18 N -0.93 -27.64 13.97 55.49 0.78 -26.87 16 19 Si 0.88 20.44 27.79 -169.99 -4.72 15.72 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.28 -5.93 6.45 56.52 0.36 -5.57 16 23 C -0.11 -1.86 4.52 -26.73 -0.12 -1.98 16 24 C -0.11 -1.72 5.77 -26.73 -0.15 -1.88 16 25 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 26 C -0.12 -1.53 5.75 -26.73 -0.15 -1.69 16 27 C -0.12 -1.58 4.65 -26.73 -0.12 -1.71 16 28 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.90 6.87 -51.93 -0.36 0.54 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 34 H 0.08 0.86 7.68 -51.93 -0.40 0.46 16 35 H 0.07 0.89 7.59 -51.93 -0.39 0.50 16 36 H 0.07 0.77 6.71 -51.93 -0.35 0.42 16 37 H 0.07 0.99 6.84 -51.93 -0.36 0.64 16 38 H 0.40 6.09 6.82 -40.82 -0.28 5.82 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.42 7.51 -51.93 -0.39 1.03 16 41 H 0.36 7.13 4.45 -40.82 -0.18 6.95 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 1.33 7.23 -51.93 -0.38 0.95 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.49 7.60 -51.93 -0.39 1.10 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.97 6.91 -51.93 -0.36 0.62 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 52 H 0.06 0.72 7.28 -51.93 -0.38 0.34 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -29.92 384.63 -8.55 -38.47 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -9.07 Total: 14.88 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.59 Total: -5.38 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.34 Total: -53.05 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.31 Total: -16.44 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.72 Total: 15.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.92 -8.55 -38.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115645843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.005 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds