Wall clock time and date at job start Tue Mar 31 2020 15:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.86812 * 2 1 4 4 O 1.43735 * 109.88163 * 121.16102 * 2 1 3 5 5 C 1.44384 * 106.97509 * 145.93681 * 4 2 1 6 6 C 1.54992 * 103.49112 * 319.94180 * 5 4 2 7 7 C 1.54097 * 109.87930 * 238.99738 * 2 1 3 8 8 C 1.53007 * 110.48782 * 119.73158 * 7 2 1 9 9 C 1.50700 * 110.48941 * 357.22114 * 7 2 1 10 10 O 1.21278 * 120.00632 * 113.41726 * 9 7 2 11 11 N 1.34782 * 119.99778 * 293.41802 * 9 7 2 12 12 C 1.46496 * 119.99889 * 184.96797 * 11 9 7 13 13 C 1.53003 * 109.47147 * 174.85459 * 12 11 9 14 14 N 1.46504 * 109.46944 * 56.85043 * 13 12 11 15 15 C 1.36939 * 119.99853 * 57.26766 * 14 13 12 16 16 H 1.07994 * 120.00158 * 5.37597 * 15 14 13 17 17 C 1.38814 * 119.99822 * 185.37826 * 15 14 13 18 18 N 1.31618 * 119.99880 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47137 * 59.99809 * 19 17 15 21 21 H 1.48500 * 109.47009 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47123 * 299.99631 * 19 17 15 23 23 C 1.53002 * 109.47424 * 176.85029 * 13 12 11 24 24 C 1.52999 * 109.46934 * 179.97438 * 23 13 12 25 25 C 1.53006 * 109.47396 * 299.99931 * 24 23 13 26 26 C 1.52998 * 109.46516 * 60.00153 * 25 24 23 27 27 C 1.53000 * 109.46783 * 296.85463 * 13 12 11 28 28 H 1.08999 * 109.46855 * 187.30621 * 1 2 3 29 29 H 1.09002 * 109.47275 * 307.30081 * 1 2 3 30 30 H 1.08995 * 109.47074 * 67.30458 * 1 2 3 31 31 H 1.08997 * 110.61561 * 78.44646 * 5 4 2 32 32 H 1.09003 * 110.61869 * 201.43708 * 5 4 2 33 33 H 1.08995 * 110.91139 * 278.82493 * 6 5 4 34 34 H 1.09005 * 110.90842 * 155.21884 * 6 5 4 35 35 H 1.08993 * 109.47059 * 298.15693 * 8 7 2 36 36 H 1.09000 * 109.46582 * 58.15948 * 8 7 2 37 37 H 1.09003 * 109.46713 * 178.15211 * 8 7 2 38 38 H 0.96996 * 119.99819 * 4.97250 * 11 9 7 39 39 H 1.09003 * 109.47413 * 54.85325 * 12 11 9 40 40 H 1.09004 * 109.47474 * 294.85018 * 12 11 9 41 41 H 0.96996 * 119.99661 * 237.26228 * 14 13 12 42 42 H 0.97005 * 120.00084 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47249 * 300.00186 * 23 13 12 44 44 H 1.08999 * 109.46394 * 60.00064 * 23 13 12 45 45 H 1.09003 * 109.46790 * 180.02562 * 24 23 13 46 46 H 1.08997 * 109.46952 * 60.00576 * 24 23 13 47 47 H 1.09002 * 109.47083 * 300.00744 * 25 24 23 48 48 H 1.08997 * 109.46772 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.46742 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.47399 * 60.00220 * 26 25 24 51 51 H 1.09000 * 109.46889 * 299.99525 * 27 13 12 52 52 H 1.08994 * 109.47692 * 60.00026 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6994 1.1567 5 6 3.2380 -1.3651 0.7627 6 6 2.9196 -1.8905 -0.6602 7 6 2.0540 -0.7464 -1.2421 8 6 2.9046 0.1855 -2.1077 9 6 0.9074 -1.3076 -2.0430 10 8 0.6722 -0.8742 -3.1511 11 7 0.1432 -2.2911 -1.5279 12 6 -0.9015 -2.9116 -2.3461 13 6 -1.5292 -4.0749 -1.5755 14 7 -2.0504 -3.5881 -0.2957 15 6 -2.9753 -2.5786 -0.2726 16 1 -3.3853 -2.2005 -1.1973 17 6 -3.3859 -2.0412 0.9397 18 7 -2.8866 -2.5023 2.0668 19 14 -4.6470 -0.6636 0.9713 20 1 -5.9075 -1.1319 0.3411 21 1 -4.9141 -0.2693 2.3779 22 1 -4.1225 0.5050 0.2202 23 6 -2.6727 -4.6732 -2.3974 24 6 -3.2999 -5.8368 -1.6270 25 6 -2.2396 -6.9099 -1.3715 26 6 -1.0962 -6.3115 -0.5497 27 6 -0.4692 -5.1480 -1.3195 28 1 -0.3633 -1.0193 0.1307 29 1 -0.3634 0.6228 0.8175 30 1 -0.3633 0.3965 -0.9480 31 1 4.0685 -0.6598 0.7346 32 1 3.4586 -2.1926 1.4370 33 1 2.3541 -2.8211 -0.6139 34 1 3.8332 -2.0206 -1.2404 35 1 2.2914 1.0152 -2.4592 36 1 3.7353 0.5721 -1.5173 37 1 3.2931 -0.3672 -2.9631 38 1 0.2850 -2.5879 -0.6154 39 1 -0.4644 -3.2835 -3.2728 40 1 -1.6690 -2.1728 -2.5772 41 1 -1.7403 -3.9810 0.5351 42 1 -3.1732 -2.1265 2.9139 43 1 -3.4279 -3.9086 -2.5798 44 1 -2.2849 -5.0353 -3.3495 45 1 -4.1142 -6.2634 -2.2127 46 1 -3.6876 -5.4750 -0.6747 47 1 -1.8519 -7.2716 -2.3239 48 1 -2.6866 -7.7390 -0.8231 49 1 -0.3410 -7.0760 -0.3673 50 1 -1.4838 -5.9498 0.4027 51 1 -0.0815 -5.5101 -2.2717 52 1 0.3454 -4.7218 -0.7340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115645844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:41 Heat of formation + Delta-G solvation = -84.852481 kcal Electronic energy + Delta-G solvation = -31184.929337 eV Core-core repulsion = 27376.969791 eV Total energy + Delta-G solvation = -3807.959546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74829 -38.97267 -37.88875 -34.49626 -33.47909 -33.18689 -31.44792 -30.99869 -30.25516 -28.59939 -27.97097 -25.77934 -24.17139 -23.74455 -22.36208 -22.02453 -21.76708 -20.33765 -19.18919 -18.23782 -17.13085 -16.74583 -16.10118 -15.62598 -15.42430 -15.03003 -14.79819 -14.62359 -14.22697 -13.99520 -13.65281 -13.61483 -13.15973 -12.89603 -12.79055 -12.62265 -12.49913 -12.04315 -11.98596 -11.86347 -11.73894 -11.68941 -11.59292 -11.50850 -11.15594 -10.90885 -10.83490 -10.81857 -10.75196 -10.57658 -10.41406 -10.19200 -10.08582 -9.79963 -9.59799 -9.59307 -9.31563 -9.26070 -8.85621 -8.30241 -6.98252 -5.77071 -3.05920 3.01241 3.43443 3.48836 3.50473 3.65588 4.00873 4.51860 4.58545 4.71939 4.82334 5.05268 5.14835 5.19337 5.24576 5.26463 5.33314 5.55966 5.58331 5.61417 5.63082 5.63878 5.69169 5.72779 5.80988 5.85079 5.93861 5.95393 5.97162 6.03400 6.10382 6.15055 6.17478 6.19034 6.20337 6.29700 6.43033 6.43666 6.51378 6.59048 6.76789 6.79483 6.81685 6.89399 6.97626 7.10722 7.12828 7.15469 7.73540 8.11043 8.40327 8.72709 9.53326 10.05803 10.42636 11.44306 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.006055 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.085855 B = 4623.279120 C = 5942.908808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.071 0.929 4 O -0.363 6.363 5 C 0.047 3.953 6 C -0.146 4.146 7 C -0.115 4.115 8 C -0.120 4.120 9 C 0.529 3.471 10 O -0.555 6.555 11 N -0.697 5.697 12 C 0.116 3.884 13 C 0.192 3.808 14 N -0.709 5.709 15 C -0.232 4.232 16 H 0.067 0.933 17 C -0.002 4.002 18 N -0.926 5.926 19 Si 0.894 3.106 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.287 1.287 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.113 4.113 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.407 0.593 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.049 0.951 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.518 -3.097 -5.293 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.032 3.968 3 H 0.089 0.911 4 O -0.282 6.282 5 C -0.030 4.030 6 C -0.184 4.184 7 C -0.118 4.118 8 C -0.178 4.178 9 C 0.314 3.686 10 O -0.435 6.435 11 N -0.349 5.349 12 C -0.010 4.010 13 C 0.100 3.900 14 N -0.351 5.351 15 C -0.363 4.363 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.726 3.274 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.213 1.213 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.151 4.151 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.245 0.755 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.099 0.901 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.076 0.924 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.120 -2.682 -5.865 12.854 hybrid contribution -0.562 0.669 0.554 1.035 sum 10.557 -2.013 -5.311 11.988 Atomic orbital electron populations 1.22284 0.91740 1.06443 1.01964 1.22794 0.96466 0.94828 0.82693 0.91104 1.88998 1.39011 1.67496 1.32656 1.23522 0.88186 0.96473 0.94780 1.23315 1.00197 0.98077 0.96799 1.22306 0.95452 0.97121 0.96946 1.21604 0.98458 0.98977 0.98736 1.19907 0.82940 0.79521 0.86207 1.90644 1.71829 1.59956 1.21023 1.45996 1.34450 1.37022 1.17411 1.21816 0.89872 0.96522 0.92750 1.19807 0.91581 0.90260 0.88395 1.42446 1.49378 1.42038 1.01278 1.18974 1.15226 1.09919 0.92230 0.91516 1.24604 1.00261 0.99538 0.95497 1.69621 1.46474 1.44598 0.96674 0.86471 0.81738 0.82813 0.76397 1.21514 1.21887 1.21340 1.21841 0.98956 0.97885 0.97056 1.21368 0.96582 0.94912 1.01788 1.21475 0.96697 0.97790 0.99051 1.21462 0.97144 0.96785 0.99910 1.21677 0.97696 0.95968 0.99777 0.88101 0.92044 0.91669 0.92300 0.88739 0.89822 0.89660 0.91470 0.92218 0.91848 0.75501 0.93131 0.91670 0.77973 0.93557 0.91858 0.93780 0.93776 0.90073 0.93205 0.93034 0.93254 0.90852 0.92374 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.34 37.16 0.31 -2.81 16 2 C 0.09 1.40 3.72 -26.16 -0.10 1.30 16 3 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 4 O -0.36 -5.81 11.19 -35.23 -0.39 -6.20 16 5 C 0.05 0.55 7.72 38.21 0.29 0.85 16 6 C -0.15 -1.72 6.12 -24.73 -0.15 -1.87 16 7 C -0.11 -1.63 0.86 -154.13 -0.13 -1.76 16 8 C -0.12 -1.49 7.61 37.16 0.28 -1.20 16 9 C 0.53 9.20 4.74 -10.98 -0.05 9.15 16 10 O -0.56 -11.30 16.09 5.56 0.09 -11.21 16 11 N -0.70 -12.05 3.23 -60.29 -0.19 -12.25 16 12 C 0.12 2.09 4.32 -4.04 -0.02 2.07 16 13 C 0.19 3.32 0.40 -131.81 -0.05 3.27 16 14 N -0.71 -14.95 3.57 -47.23 -0.17 -15.12 16 15 C -0.23 -5.70 8.69 -15.06 -0.13 -5.83 16 16 H 0.07 1.67 6.74 -52.49 -0.35 1.32 16 17 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 18 N -0.93 -25.67 13.06 55.49 0.72 -24.95 16 19 Si 0.89 21.78 29.55 -169.99 -5.02 16.76 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.12 -1.97 4.60 -26.73 -0.12 -2.09 16 24 C -0.11 -1.77 5.77 -26.73 -0.15 -1.92 16 25 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 26 C -0.12 -1.69 5.75 -26.76 -0.15 -1.84 16 27 C -0.11 -1.69 4.65 -26.76 -0.12 -1.81 16 28 H 0.10 2.13 5.64 -51.93 -0.29 1.84 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.25 7.26 -51.93 -0.38 0.88 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.03 6.76 -51.93 -0.35 0.68 16 34 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 35 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.41 7.17 5.33 -40.82 -0.22 6.96 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.34 7.35 -51.93 -0.38 0.96 16 41 H 0.39 8.83 6.44 -40.82 -0.26 8.57 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.06 1.17 7.32 -51.93 -0.38 0.79 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.57 7.60 -51.93 -0.39 1.18 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 1.24 6.81 -51.93 -0.35 0.89 16 51 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.06 0.84 7.17 -51.93 -0.37 0.47 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -28.10 386.78 -8.87 -36.96 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -9.17 Total: 16.57 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.56 Total: -6.41 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.36 Total: -52.31 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.30 Total: -17.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.10 -8.87 -36.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115645844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.889 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds