Wall clock time and date at job start Tue Mar 31 2020 15:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99045 * 2 1 4 4 O 1.43749 * 109.87912 * 238.91523 * 2 1 3 5 5 C 1.44378 * 106.97257 * 267.09092 * 4 2 1 6 6 C 1.54998 * 103.49311 * 319.93693 * 5 4 2 7 7 C 1.54101 * 109.87637 * 121.08621 * 2 1 3 8 8 C 1.53002 * 110.48276 * 236.20131 * 7 2 1 9 9 C 1.50695 * 110.48897 * 358.71756 * 7 2 1 10 10 O 1.21279 * 120.00198 * 113.09222 * 9 7 2 11 11 N 1.34784 * 119.99989 * 293.08970 * 9 7 2 12 12 C 1.46498 * 119.99860 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46797 * 183.66920 * 12 11 9 14 14 N 1.46501 * 109.47148 * 305.53555 * 13 12 11 15 15 C 1.36936 * 120.00491 * 301.02730 * 14 13 12 16 16 H 1.08004 * 119.99601 * 4.76409 * 15 14 13 17 17 C 1.38812 * 120.00424 * 184.76902 * 15 14 13 18 18 N 1.31623 * 119.99660 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00205 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47004 * 89.99988 * 19 17 15 21 21 H 1.48500 * 109.47199 * 209.99649 * 19 17 15 22 22 H 1.48503 * 109.47137 * 330.00131 * 19 17 15 23 23 C 1.52997 * 109.47382 * 65.53895 * 13 12 11 24 24 C 1.52997 * 109.47170 * 179.97438 * 23 13 12 25 25 C 1.52997 * 109.47290 * 300.00062 * 24 23 13 26 26 C 1.52997 * 109.47065 * 59.99873 * 25 24 23 27 27 C 1.52997 * 109.47170 * 300.00200 * 26 25 24 28 28 H 1.08998 * 109.47037 * 305.15885 * 1 2 3 29 29 H 1.09006 * 109.46797 * 65.16240 * 1 2 3 30 30 H 1.09004 * 109.47059 * 185.16001 * 1 2 3 31 31 H 1.08998 * 110.61911 * 78.44058 * 5 4 2 32 32 H 1.09005 * 110.61310 * 201.43734 * 5 4 2 33 33 H 1.08996 * 110.90872 * 278.82982 * 6 5 4 34 34 H 1.08999 * 110.90522 * 155.22410 * 6 5 4 35 35 H 1.09006 * 109.47097 * 181.84188 * 8 7 2 36 36 H 1.08995 * 109.47770 * 301.84154 * 8 7 2 37 37 H 1.09005 * 109.47382 * 61.84686 * 8 7 2 38 38 H 0.96999 * 119.99877 * 359.97438 * 11 9 7 39 39 H 1.08998 * 109.47244 * 63.67345 * 12 11 9 40 40 H 1.08994 * 109.47496 * 303.66918 * 12 11 9 41 41 H 0.96998 * 119.99674 * 121.02627 * 14 13 12 42 42 H 0.97003 * 119.99702 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.46677 * 59.99544 * 23 13 12 44 44 H 1.08996 * 109.47256 * 300.00074 * 23 13 12 45 45 H 1.09002 * 109.47073 * 60.00585 * 24 23 13 46 46 H 1.09004 * 109.46902 * 179.97438 * 24 23 13 47 47 H 1.09000 * 109.47085 * 179.97438 * 25 24 23 48 48 H 1.08998 * 109.47272 * 299.99810 * 25 24 23 49 49 H 1.09004 * 109.47135 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.47160 * 60.00404 * 26 25 24 51 51 H 1.09002 * 109.47073 * 299.99415 * 27 26 25 52 52 H 1.09004 * 109.46902 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 2.2280 -2.0714 -0.7647 6 6 2.8325 -1.9525 0.6576 7 6 2.0540 -0.7483 1.2411 8 6 2.9858 0.1517 2.0551 9 6 0.9061 -1.2251 2.0931 10 8 0.6906 -2.4128 2.2107 11 7 0.1189 -0.3316 2.7246 12 6 -0.9973 -0.7951 3.5524 13 6 -1.7791 0.4113 4.0762 14 7 -0.8646 1.3228 4.7683 15 6 -0.1429 0.8817 5.8451 16 1 -0.1890 -0.1571 6.1371 17 6 0.6479 1.7695 6.5616 18 7 0.7043 3.0354 6.2055 19 14 1.6318 1.1678 8.0310 20 1 2.9748 0.7234 7.5790 21 1 1.7803 2.2719 9.0129 22 1 0.9226 0.0298 8.6691 23 6 -2.4363 1.1415 2.9032 24 6 -3.2186 2.3474 3.4271 25 6 -4.2984 1.8711 4.4007 26 6 -3.6412 1.1410 5.5737 27 6 -2.8589 -0.0650 5.0498 28 1 -0.3633 0.5918 0.8402 29 1 -0.3633 0.4317 -0.9327 30 1 -0.3633 -1.0235 0.0924 31 1 1.2813 -2.6108 -0.7356 32 1 2.9295 -2.5612 -1.4401 33 1 3.9003 -1.7391 0.6099 34 1 2.6432 -2.8558 1.2374 35 1 3.3720 -0.4036 2.9099 36 1 3.8159 0.4771 1.4282 37 1 2.4333 1.0229 2.4074 38 1 0.2915 0.6183 2.6309 39 1 -0.6112 -1.3709 4.3936 40 1 -1.6569 -1.4237 2.9542 41 1 -0.7703 2.2389 4.4637 42 1 1.2572 3.6558 6.7059 43 1 -3.1167 0.4632 2.3883 44 1 -1.6671 1.4804 2.2093 45 1 -2.5384 3.0259 3.9422 46 1 -3.6864 2.8679 2.5913 47 1 -4.8554 2.7304 4.7742 48 1 -4.9785 1.1928 3.8856 49 1 -4.4105 0.8020 6.2676 50 1 -2.9611 1.8193 6.0889 51 1 -3.5390 -0.7434 4.5347 52 1 -2.3911 -0.5855 5.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115645845.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:44 Heat of formation + Delta-G solvation = -87.901974 kcal Electronic energy + Delta-G solvation = -30826.981109 eV Core-core repulsion = 27018.889327 eV Total energy + Delta-G solvation = -3808.091782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88041 -39.04121 -37.85432 -34.58378 -33.75428 -33.19418 -31.46691 -30.76831 -30.27131 -28.69313 -28.46845 -25.57981 -24.51045 -23.80814 -22.48502 -21.91373 -21.71063 -20.38511 -19.23375 -18.31034 -17.27814 -16.98706 -16.50609 -15.52652 -15.39570 -15.06882 -14.61540 -14.41151 -14.31894 -14.02532 -13.72415 -13.66010 -13.31549 -13.18471 -12.95848 -12.79619 -12.45216 -12.35080 -12.01023 -11.94713 -11.84697 -11.73717 -11.61241 -11.52362 -11.17035 -11.05665 -10.91355 -10.89851 -10.79922 -10.58299 -10.55330 -10.19957 -10.07817 -9.83502 -9.66645 -9.64923 -9.36715 -9.31945 -8.91313 -8.39718 -7.04839 -5.84117 -3.12812 2.98582 3.38222 3.45449 3.46153 3.59820 3.92524 4.37466 4.53153 4.70580 4.82209 5.08089 5.16062 5.19769 5.21361 5.24350 5.25653 5.32735 5.53462 5.53763 5.57211 5.58861 5.68332 5.71127 5.79288 5.81373 5.88934 5.94397 5.96233 5.99347 6.01889 6.07167 6.12778 6.13815 6.17828 6.24026 6.27051 6.31809 6.43806 6.47596 6.56655 6.76080 6.77945 6.78569 6.84100 6.95726 7.06407 7.16399 7.68077 8.02871 8.33891 8.65154 9.46779 9.99266 10.35920 11.37724 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.005160 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.444653 B = 5424.698036 C = 6875.895788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.102 0.898 4 O -0.372 6.372 5 C 0.047 3.953 6 C -0.137 4.137 7 C -0.113 4.113 8 C -0.136 4.136 9 C 0.529 3.471 10 O -0.555 6.555 11 N -0.695 5.695 12 C 0.116 3.884 13 C 0.191 3.809 14 N -0.709 5.709 15 C -0.229 4.229 16 H 0.068 0.932 17 C -0.007 4.007 18 N -0.931 5.931 19 Si 0.898 3.102 20 H -0.292 1.292 21 H -0.293 1.293 22 H -0.283 1.283 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.109 4.109 27 C -0.116 4.116 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.404 0.596 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.043 0.957 50 H 0.082 0.918 51 H 0.043 0.957 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 -4.029 -11.340 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.030 3.970 3 H 0.120 0.880 4 O -0.291 6.291 5 C -0.029 4.029 6 C -0.175 4.175 7 C -0.116 4.116 8 C -0.194 4.194 9 C 0.314 3.686 10 O -0.435 6.435 11 N -0.346 5.346 12 C -0.010 4.010 13 C 0.099 3.901 14 N -0.352 5.352 15 C -0.360 4.360 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.730 3.270 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.209 1.209 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.156 4.156 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.101 0.899 51 H 0.062 0.938 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.419 -4.827 -11.283 12.508 hybrid contribution 0.689 0.312 1.138 1.366 sum -1.731 -4.514 -10.145 11.238 Atomic orbital electron populations 1.22628 0.95285 1.03059 1.03220 1.22767 0.94180 0.96586 0.83456 0.88037 1.88878 1.86072 1.21032 1.33133 1.23538 1.00069 0.84157 0.95147 1.23133 0.99477 0.98526 0.96364 1.22221 0.95630 0.97646 0.96112 1.21830 0.98679 0.99209 0.99666 1.19929 0.82679 0.86250 0.79703 1.90629 1.72007 1.16537 1.64281 1.45911 1.30614 1.10075 1.47968 1.21833 0.87783 0.97700 0.93720 1.19813 0.89511 0.89684 0.91095 1.42456 1.47300 1.10907 1.34490 1.19059 1.18899 0.93740 1.04282 0.91391 1.24639 1.01026 0.95420 0.99242 1.69641 1.43838 1.02266 1.42156 0.86329 0.80281 0.77395 0.83008 1.21944 1.21934 1.20897 1.21715 0.98772 0.97419 0.97261 1.21474 0.97863 0.97796 0.98199 1.21468 0.97308 0.99224 0.96986 1.21368 0.98521 0.98049 0.96744 1.21818 0.97045 0.97166 0.99550 0.90191 0.91685 0.92122 0.92015 0.89057 0.90092 0.88415 0.91516 0.91513 0.90986 0.75883 0.91858 0.92938 0.78018 0.93611 0.92275 0.92454 0.90764 0.93241 0.93032 0.93229 0.93798 0.89926 0.93804 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.27 37.16 0.31 -2.03 16 2 C 0.09 1.14 3.76 -26.15 -0.10 1.04 16 3 H 0.10 1.19 7.69 -51.93 -0.40 0.79 16 4 O -0.37 -5.05 11.19 -35.23 -0.39 -5.45 16 5 C 0.05 0.57 7.67 38.21 0.29 0.87 16 6 C -0.14 -1.75 6.08 -24.72 -0.15 -1.90 16 7 C -0.11 -1.56 0.83 -154.13 -0.13 -1.69 16 8 C -0.14 -1.83 8.12 37.16 0.30 -1.53 16 9 C 0.53 8.81 4.69 -10.98 -0.05 8.76 16 10 O -0.56 -10.86 15.43 5.56 0.09 -10.77 16 11 N -0.70 -11.36 3.44 -60.30 -0.21 -11.57 16 12 C 0.12 2.01 4.29 -4.04 -0.02 1.99 16 13 C 0.19 3.23 0.41 -131.82 -0.05 3.18 16 14 N -0.71 -14.64 3.45 -47.23 -0.16 -14.80 16 15 C -0.23 -5.54 8.71 -15.06 -0.13 -5.67 16 16 H 0.07 1.69 6.77 -52.48 -0.36 1.34 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 18 N -0.93 -25.49 13.06 55.49 0.72 -24.76 16 19 Si 0.90 21.46 29.55 -169.99 -5.02 16.43 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.11 -1.65 4.66 -26.73 -0.12 -1.77 16 24 C -0.12 -1.67 5.75 -26.73 -0.15 -1.83 16 25 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 26 C -0.11 -1.79 5.77 -26.73 -0.15 -1.94 16 27 C -0.12 -1.94 4.57 -26.73 -0.12 -2.06 16 28 H 0.08 1.00 4.61 -51.93 -0.24 0.76 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.86 7.22 -51.93 -0.37 0.48 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 34 H 0.10 1.38 6.87 -51.93 -0.36 1.02 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.02 7.44 -51.93 -0.39 0.63 16 38 H 0.40 6.50 5.71 -40.82 -0.23 6.26 16 39 H 0.06 1.27 7.33 -51.93 -0.38 0.89 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.38 8.58 6.49 -40.82 -0.27 8.32 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.80 6.13 -51.93 -0.32 0.48 16 45 H 0.07 1.25 6.84 -51.93 -0.36 0.89 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 1.64 7.61 -51.93 -0.39 1.24 16 51 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.06 1.18 7.43 -51.93 -0.39 0.80 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -27.66 384.47 -8.78 -36.44 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -9.06 Total: 15.31 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.54 Total: -6.63 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.35 Total: -51.13 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.31 Total: -16.22 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.66 -8.78 -36.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115645845.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.461 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds