Wall clock time and date at job start Tue Mar 31 2020 15:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.58669 * 2 1 4 4 C 1.53201 * 109.58403 * 239.72166 * 2 1 3 5 5 C 1.53043 * 109.31108 * 185.57457 * 4 2 1 6 6 C 1.53043 * 109.53436 * 61.36574 * 5 4 2 7 7 H 1.09004 * 109.52482 * 58.59945 * 6 5 4 8 8 N 1.46504 * 109.49516 * 178.68043 * 6 5 4 9 9 C 1.34772 * 119.99728 * 204.83753 * 8 6 5 10 10 O 1.21279 * 120.00724 * 0.02562 * 9 8 6 11 11 C 1.50701 * 119.99962 * 180.02562 * 9 8 6 12 12 O 1.42899 * 109.47617 * 179.97438 * 11 9 8 13 13 C 1.42896 * 114.00428 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47204 * 270.00180 * 13 12 11 15 15 C 1.53003 * 109.47231 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47100 * 60.00114 * 15 14 13 17 17 C 1.53001 * 109.46632 * 299.99922 * 16 15 14 18 18 C 1.52998 * 109.47290 * 150.00194 * 13 12 11 19 19 C 1.53187 * 109.31389 * 298.63438 * 6 5 4 20 20 N 1.46922 * 109.58866 * 120.43340 * 2 1 3 21 21 C 1.36936 * 120.62881 * 353.36979 * 20 2 1 22 22 H 1.08001 * 119.99917 * 29.02008 * 21 20 2 23 23 C 1.38811 * 120.00067 * 209.01397 * 21 20 2 24 24 N 1.31622 * 119.99871 * 15.04791 * 23 21 20 25 25 Si 1.86794 * 120.00350 * 195.04187 * 23 21 20 26 26 H 1.48500 * 109.46972 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47404 * 120.00184 * 25 23 21 28 28 H 1.48503 * 109.47509 * 240.00243 * 25 23 21 29 29 H 1.09002 * 109.47701 * 180.28044 * 1 2 3 30 30 H 1.09003 * 109.47379 * 300.27732 * 1 2 3 31 31 H 1.08999 * 109.47428 * 60.27669 * 1 2 3 32 32 H 1.09000 * 109.49643 * 305.53015 * 4 2 1 33 33 H 1.08995 * 109.49803 * 65.62487 * 4 2 1 34 34 H 1.08995 * 109.45846 * 181.38366 * 5 4 2 35 35 H 1.08993 * 109.46049 * 301.35017 * 5 4 2 36 36 H 0.96993 * 119.99867 * 24.83701 * 8 6 5 37 37 H 1.09003 * 109.46706 * 300.00286 * 11 9 8 38 38 H 1.09004 * 109.47399 * 59.99460 * 11 9 8 39 39 H 1.09007 * 109.46992 * 29.99742 * 13 12 11 40 40 H 1.09000 * 109.47360 * 300.00046 * 14 13 12 41 41 H 1.09004 * 109.47170 * 59.99942 * 14 13 12 42 42 H 1.09000 * 109.46808 * 299.99494 * 15 14 13 43 43 H 1.09003 * 109.47212 * 180.02562 * 15 14 13 44 44 H 1.09001 * 109.47360 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.47140 * 59.99615 * 16 15 14 46 46 H 1.09000 * 109.47630 * 299.99730 * 17 16 15 47 47 H 1.09004 * 109.46816 * 179.97438 * 17 16 15 48 48 H 1.09006 * 109.46935 * 299.99590 * 18 13 12 49 49 H 1.08993 * 109.47465 * 59.99924 * 18 13 12 50 50 H 1.09002 * 109.58948 * 294.84921 * 19 6 5 51 51 H 1.09004 * 109.58783 * 174.42658 * 19 6 5 52 52 H 0.97003 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2465 5 6 3.5674 -0.8464 -1.1714 6 6 3.9568 -1.6658 0.0611 7 1 3.4986 -2.6531 0.0019 8 7 5.4142 -1.8055 0.1149 9 6 5.9676 -2.8474 0.7664 10 8 5.2593 -3.6696 1.3078 11 6 7.4668 -2.9909 0.8223 12 8 7.8058 -4.1645 1.5637 13 6 9.2115 -4.3949 1.6766 14 6 9.6836 -5.2534 0.5014 15 6 11.1889 -5.4996 0.6220 16 6 11.4832 -6.2268 1.9355 17 6 11.0111 -5.3682 3.1105 18 6 9.5053 -5.1224 2.9900 19 6 3.4650 -0.9487 1.3223 20 7 2.0225 -0.7011 1.1935 21 6 1.1537 -1.1155 2.1674 22 1 0.1359 -1.3694 1.9107 23 6 1.5813 -1.2094 3.4847 24 7 2.7045 -0.6317 3.8548 25 14 0.5626 -2.1556 4.7322 26 1 -0.6459 -2.7069 4.0683 27 1 1.3718 -3.2689 5.2899 28 1 0.1522 -1.2437 5.8301 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3634 0.5181 0.8875 31 1 -0.3634 0.5095 -0.8924 32 1 1.6028 -1.7236 -1.2937 33 1 1.7659 -0.1640 -2.1371 34 1 3.9377 -1.3420 -2.0688 35 1 4.0060 0.1488 -1.0992 36 1 5.9807 -1.1482 -0.3184 37 1 7.8617 -3.0735 -0.1903 38 1 7.8976 -2.1164 1.3100 39 1 9.7383 -3.4406 1.6640 40 1 9.1569 -6.2076 0.5138 41 1 9.4744 -4.7351 -0.4344 42 1 11.7153 -4.5452 0.6091 43 1 11.5253 -6.1108 -0.2155 44 1 12.5556 -6.4018 2.0216 45 1 10.9567 -7.1812 1.9482 46 1 11.5375 -4.4138 3.0979 47 1 11.2203 -5.8866 4.0464 48 1 9.1690 -4.5107 3.8273 49 1 8.9786 -6.0766 3.0026 50 1 3.9902 0.0001 1.4316 51 1 3.6518 -1.5747 2.1949 52 1 3.0032 -0.6970 4.7754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132150607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:21 Heat of formation + Delta-G solvation = -85.566981 kcal Electronic energy + Delta-G solvation = -28651.842376 eV Core-core repulsion = 24843.851846 eV Total energy + Delta-G solvation = -3807.990529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.72713 -38.97528 -37.58163 -36.27030 -34.30853 -32.77666 -31.07792 -30.94526 -30.08238 -29.77477 -27.57759 -25.69232 -24.74373 -22.84350 -22.39269 -22.21497 -20.84254 -20.19099 -19.87856 -19.19480 -17.13964 -16.74239 -16.32205 -15.85184 -15.60522 -15.25767 -14.86066 -14.54418 -14.38456 -13.94079 -13.76462 -13.62486 -13.55617 -13.34660 -13.12558 -12.70717 -12.58680 -12.42001 -12.34872 -12.18025 -11.83001 -11.41487 -11.36692 -11.24563 -11.09284 -10.85540 -10.83955 -10.71478 -10.67344 -10.51456 -10.47149 -10.35225 -10.21074 -9.91254 -9.69364 -9.52633 -9.41429 -9.20842 -8.48297 -8.37062 -6.57013 -5.69095 -3.13622 3.02855 3.09717 3.46260 3.54338 3.55465 4.03663 4.47419 4.49066 4.58437 4.72309 4.88479 4.94835 5.08104 5.09986 5.13587 5.22157 5.24473 5.29838 5.36420 5.37903 5.40889 5.53553 5.55036 5.61139 5.71005 5.75291 5.75331 5.86284 5.93962 5.96138 6.00096 6.10947 6.13178 6.16725 6.29687 6.33642 6.41882 6.48317 6.53859 6.65499 6.78131 6.97278 7.06595 7.13020 7.16641 7.37836 7.80214 7.90383 7.98179 8.54993 8.71965 9.29541 9.93905 10.48670 11.38931 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.002923 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.011453 B = 9575.828379 C =11065.319556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.119 3.881 7 H 0.081 0.919 8 N -0.721 5.721 9 C 0.508 3.492 10 O -0.511 6.511 11 C 0.046 3.954 12 O -0.354 6.354 13 C 0.089 3.911 14 C -0.143 4.143 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.118 4.118 19 C 0.167 3.833 20 N -0.584 5.584 21 C -0.252 4.252 22 H 0.071 0.929 23 C 0.005 3.995 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.291 1.291 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.391 0.609 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.016 0.984 51 H 0.096 0.904 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.016 -4.179 -9.750 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.099 0.901 8 N -0.374 5.374 9 C 0.292 3.708 10 O -0.384 6.384 11 C -0.034 4.034 12 O -0.272 6.272 13 C 0.031 3.969 14 C -0.180 4.180 15 C -0.154 4.154 16 C -0.160 4.160 17 C -0.153 4.153 18 C -0.156 4.156 19 C 0.040 3.960 20 N -0.307 5.307 21 C -0.381 4.381 22 H 0.088 0.912 23 C -0.194 4.194 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.202 1.202 27 H -0.215 1.215 28 H -0.218 1.218 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.034 0.966 51 H 0.114 0.886 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.390 -4.922 -9.078 19.371 hybrid contribution 0.144 0.124 0.317 0.370 sum 16.534 -4.798 -8.761 19.317 Atomic orbital electron populations 1.21803 0.96018 1.01444 1.00134 1.20483 0.93064 0.93522 0.87099 0.95796 1.22052 0.94318 1.01337 0.98907 1.21675 0.97401 0.99595 0.96700 1.21983 0.77554 1.00869 0.98249 0.90055 1.45965 1.08622 1.26730 1.56078 1.20097 0.89318 0.82004 0.79348 1.90771 1.63007 1.41531 1.43121 1.22262 0.94325 0.89793 0.97055 1.88086 1.22438 1.42799 1.73867 1.22159 0.81702 0.97772 0.95293 1.22065 0.96080 1.01460 0.98443 1.21493 0.95578 1.00618 0.97695 1.21584 1.00757 0.99106 0.94583 1.21518 0.95160 1.00184 0.98486 1.21596 0.95941 1.01614 0.96400 1.21098 0.83486 0.96899 0.94472 1.44035 1.02683 1.64639 1.19363 1.19182 0.94682 1.38123 0.86150 0.91156 1.25075 0.97733 0.99495 0.97048 1.70001 1.23286 1.44451 1.16732 0.86258 0.79640 0.79658 0.81424 1.20240 1.21472 1.21839 0.92765 0.92031 0.94367 0.92067 0.92703 0.93124 0.92299 0.77601 0.90967 0.90557 0.92203 0.90901 0.91901 0.91990 0.91763 0.91965 0.91735 0.91891 0.91404 0.90996 0.90871 0.96591 0.88617 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.94 37.16 0.30 -2.29 16 2 C 0.16 3.41 3.50 -67.60 -0.24 3.17 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.17 5.37 -26.61 -0.14 -2.31 16 5 C -0.12 -1.87 5.35 -26.69 -0.14 -2.01 16 6 C 0.12 2.34 2.60 -67.81 -0.18 2.16 16 7 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 8 N -0.72 -11.79 5.08 -53.69 -0.27 -12.06 16 9 C 0.51 9.26 7.87 -10.99 -0.09 9.18 16 10 O -0.51 -12.25 16.16 -14.35 -0.23 -12.49 16 11 C 0.05 0.62 6.23 36.01 0.22 0.84 16 12 O -0.35 -5.46 9.52 -55.14 -0.52 -5.99 16 13 C 0.09 0.99 2.61 -26.73 -0.07 0.92 16 14 C -0.14 -1.35 5.54 -26.73 -0.15 -1.50 16 15 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 16 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 17 C -0.12 -0.92 5.92 -26.71 -0.16 -1.08 16 18 C -0.12 -1.25 5.58 -26.71 -0.15 -1.40 16 19 C 0.17 4.12 4.86 -3.71 -0.02 4.10 16 20 N -0.58 -14.74 2.99 -164.78 -0.49 -15.24 16 21 C -0.25 -7.01 8.61 -15.06 -0.13 -7.14 16 22 H 0.07 1.91 6.20 -52.49 -0.33 1.58 16 23 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 24 N -0.90 -27.12 11.14 55.49 0.62 -26.50 16 25 Si 0.90 22.86 29.58 -169.99 -5.03 17.83 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 29 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 30 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.39 4.78 8.60 -40.82 -0.35 4.43 16 37 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 38 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.10 2.80 6.06 -51.93 -0.31 2.49 16 52 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -34.32 398.29 -10.98 -45.30 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -9.71 Total: 2.51 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.34 Total: 0.63 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.15 Total: -53.80 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.76 Total: -18.47 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.32 -10.98 -45.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132150607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.266 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds