Wall clock time and date at job start Tue Mar 31 2020 15:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.33108 * 2 1 4 4 C 1.54474 * 110.37192 * 122.37615 * 2 1 3 5 5 C 1.54509 * 104.06141 * 142.81049 * 4 2 1 6 6 C 1.54476 * 104.06605 * 359.97438 * 5 4 2 7 7 H 1.09001 * 110.37564 * 94.85326 * 6 5 4 8 8 C 1.53005 * 110.37411 * 217.19322 * 6 5 4 9 9 C 1.52995 * 109.47189 * 181.83352 * 8 6 5 10 10 C 1.50699 * 109.47387 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99518 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00184 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99915 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47405 * 175.52689 * 13 12 10 15 15 N 1.46504 * 110.01490 * 55.27196 * 14 13 12 16 16 C 1.36933 * 120.00206 * 61.55114 * 15 14 13 17 17 H 1.08008 * 120.00019 * 354.37897 * 16 15 14 18 18 C 1.38813 * 120.00460 * 174.37586 * 16 15 14 19 19 N 1.31619 * 119.99677 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47081 * 60.00343 * 20 18 16 22 22 H 1.48504 * 109.47020 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47504 * 300.00181 * 20 18 16 24 24 C 1.54266 * 110.03059 * 293.88649 * 14 13 12 25 25 C 1.54972 * 104.15655 * 217.13394 * 24 14 13 26 26 C 1.54889 * 102.77634 * 37.88466 * 25 24 14 27 27 C 1.53869 * 110.03589 * 176.66350 * 14 13 12 28 28 O 1.44425 * 110.37142 * 237.75725 * 2 1 3 29 29 H 1.09002 * 109.47322 * 180.79261 * 1 2 3 30 30 H 1.09000 * 109.47175 * 60.79370 * 1 2 3 31 31 H 1.09001 * 109.47110 * 300.79035 * 1 2 3 32 32 H 1.09007 * 110.51077 * 261.45093 * 4 2 1 33 33 H 1.08994 * 110.51544 * 24.16508 * 4 2 1 34 34 H 1.08998 * 110.50960 * 241.34669 * 5 4 2 35 35 H 1.09006 * 110.63113 * 118.70080 * 5 4 2 36 36 H 1.09000 * 109.46983 * 301.83248 * 8 6 5 37 37 H 1.08997 * 109.46650 * 61.82941 * 8 6 5 38 38 H 1.09000 * 109.47073 * 299.99840 * 9 8 6 39 39 H 1.09003 * 109.47057 * 59.99552 * 9 8 6 40 40 H 0.96998 * 120.00121 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.46965 * 295.53041 * 13 12 10 42 42 H 1.09003 * 109.47017 * 55.52891 * 13 12 10 43 43 H 0.97005 * 119.99979 * 241.55597 * 15 14 13 44 44 H 0.96998 * 119.99919 * 179.97438 * 19 18 16 45 45 H 1.09003 * 110.48832 * 335.77391 * 24 14 13 46 46 H 1.08992 * 110.49107 * 98.42849 * 24 14 13 47 47 H 1.09004 * 110.71775 * 279.56852 * 25 24 14 48 48 H 1.09000 * 110.92447 * 156.29307 * 25 24 14 49 49 H 1.09006 * 110.48613 * 203.40604 * 26 25 24 50 50 H 1.08996 * 110.59818 * 80.82051 * 26 25 24 51 51 H 1.08998 * 110.03177 * 238.57462 * 27 14 13 52 52 H 1.09001 * 110.03207 * 359.95073 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7754 1.2230 5 6 3.3177 -1.5064 0.6841 6 6 3.3870 -1.0867 -0.8010 7 1 4.0520 -0.2317 -0.9231 8 6 3.8597 -2.2582 -1.6641 9 6 3.9646 -1.8075 -3.1224 10 6 4.4308 -2.9612 -3.9725 11 8 4.6565 -4.0381 -3.4622 12 7 4.5960 -2.7966 -5.2999 13 6 5.0497 -3.9181 -6.1262 14 6 5.0472 -3.5008 -7.5982 15 7 5.8565 -2.2930 -7.7785 16 6 7.1924 -2.3129 -7.4783 17 1 7.6309 -3.1892 -7.0239 18 6 7.9833 -1.2069 -7.7580 19 7 7.4489 -0.1389 -8.3114 20 14 9.8057 -1.2344 -7.3492 21 1 10.4625 -2.3415 -8.0897 22 1 10.4209 0.0586 -7.7430 23 1 9.9826 -1.4419 -5.8894 24 6 3.6018 -3.2438 -8.0721 25 6 3.5798 -3.7756 -9.5275 26 6 4.4723 -5.0388 -9.4442 27 6 5.6007 -4.6413 -8.4704 28 8 2.0328 -0.7223 -1.1451 29 1 -0.3634 -1.0276 0.0142 30 1 -0.3633 0.5015 -0.8970 31 1 -0.3633 0.5261 0.8828 32 1 2.3430 -0.0862 2.0214 33 1 1.3276 -1.4937 1.5755 34 1 3.1955 -2.5861 0.7702 35 1 4.2121 -1.1808 1.2155 36 1 4.8366 -2.5946 -1.3167 37 1 3.1449 -3.0775 -1.5875 38 1 2.9877 -1.4712 -3.4699 39 1 4.6793 -0.9881 -3.1990 40 1 4.4144 -1.9357 -5.7082 41 1 6.0598 -4.2017 -5.8307 42 1 4.3790 -4.7661 -5.9878 43 1 5.4461 -1.4792 -8.1104 44 1 8.0015 0.6341 -8.5065 45 1 2.8937 -3.7958 -7.4538 46 1 3.3774 -2.1775 -8.0514 47 1 4.0091 -3.0438 -10.2120 48 1 2.5663 -4.0380 -9.8309 49 1 4.8823 -5.2816 -10.4245 50 1 3.9067 -5.8825 -9.0487 51 1 6.4710 -4.2959 -9.0283 52 1 5.8720 -5.4917 -7.8449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:17 Heat of formation + Delta-G solvation = -101.779997 kcal Electronic energy + Delta-G solvation = -28389.356606 eV Core-core repulsion = 24580.663027 eV Total energy + Delta-G solvation = -3808.693578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.88470 -39.27009 -38.07913 -34.12383 -33.80627 -33.25171 -32.39438 -30.95580 -30.44717 -28.27277 -27.99877 -26.47019 -24.37402 -23.32883 -22.64702 -21.43137 -20.91814 -20.38618 -19.60089 -18.50155 -17.10427 -16.77963 -16.44509 -16.17683 -15.75606 -15.19878 -14.96330 -14.83041 -14.48589 -14.06020 -13.97726 -13.55050 -13.41325 -13.26733 -13.12719 -12.72459 -12.58778 -12.51468 -12.37148 -11.85946 -11.75581 -11.62518 -11.53421 -11.17729 -11.02294 -10.92752 -10.86285 -10.79600 -10.73660 -10.66137 -10.55868 -10.49996 -10.35184 -10.04948 -9.85157 -9.83705 -9.63998 -9.31778 -8.91117 -8.35483 -7.01409 -5.80733 -3.09847 3.17342 3.42111 3.46994 3.48261 3.65712 3.78204 4.40605 4.45991 4.56728 4.70659 4.78585 4.98676 5.05383 5.12294 5.13291 5.17204 5.25302 5.26438 5.30728 5.36801 5.50808 5.57361 5.57960 5.62254 5.67713 5.71085 5.78909 5.81035 5.87303 5.89606 5.90317 5.99165 6.01933 6.12253 6.14579 6.18968 6.28387 6.29861 6.36475 6.46503 6.60452 6.66269 6.76091 6.79109 6.86648 7.05923 7.19088 7.71677 8.15874 8.38198 8.79566 9.49604 10.04098 10.39930 11.41223 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.002982 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.867451 B = 9387.847483 C =10666.045788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.074 3.926 7 H 0.070 0.930 8 C -0.093 4.093 9 C -0.139 4.139 10 C 0.508 3.492 11 O -0.563 6.563 12 N -0.702 5.702 13 C 0.119 3.881 14 C 0.188 3.812 15 N -0.712 5.712 16 C -0.233 4.233 17 H 0.068 0.932 18 C -0.009 4.009 19 N -0.932 5.932 20 Si 0.902 3.098 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.130 4.130 28 O -0.366 6.366 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.403 0.597 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.082 0.918 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 -1.267 12.809 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.085 0.915 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.016 3.984 7 H 0.088 0.912 8 C -0.131 4.131 9 C -0.179 4.179 10 C 0.294 3.706 11 O -0.443 6.443 12 N -0.352 5.352 13 C -0.007 4.007 14 C 0.096 3.904 15 N -0.354 5.354 16 C -0.364 4.364 17 H 0.086 0.914 18 C -0.205 4.205 19 N -0.580 5.580 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.170 4.170 28 O -0.286 6.286 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.239 0.761 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.100 0.900 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.938 -2.093 12.975 18.442 hybrid contribution 1.160 0.836 0.075 1.432 sum -11.777 -1.256 13.050 17.624 Atomic orbital electron populations 1.21800 0.93375 1.02850 1.02335 1.22951 0.95237 0.95444 0.85343 0.91532 1.22996 0.97861 0.99723 0.98288 1.22981 0.98289 1.01758 0.95913 1.23068 0.84608 0.97250 0.93429 0.91215 1.21368 1.02489 0.96434 0.92792 1.21604 1.03502 0.97613 0.95164 1.20591 0.77563 0.89655 0.82771 1.90636 1.52557 1.28021 1.73067 1.45811 1.66771 1.15525 1.07063 1.21904 0.98957 0.87822 0.92057 1.20453 0.90167 0.88976 0.90775 1.42538 1.06386 1.07974 1.78457 1.19051 0.84896 0.99714 1.32702 0.91361 1.24698 0.97750 0.96718 1.01341 1.69642 1.34992 1.04887 1.48434 0.86354 0.85748 0.76610 0.77998 1.21311 1.21790 1.21356 1.22582 0.96384 1.00915 0.96129 1.22424 0.98574 0.97596 0.97077 1.22302 0.97159 0.97143 0.99212 1.22662 0.98898 0.97746 0.97709 1.89164 1.27124 1.74394 1.37877 0.91835 0.91792 0.91392 0.90797 0.90665 0.90380 0.90561 0.89932 0.90507 0.88671 0.89046 0.76127 0.92133 0.92887 0.78160 0.93525 0.91838 0.91551 0.91302 0.92634 0.92492 0.92614 0.89957 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.52 37.16 0.35 -0.78 16 2 C 0.07 0.62 3.92 -25.96 -0.10 0.52 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -1.19 6.63 -25.17 -0.17 -1.35 16 5 C -0.15 -1.36 6.63 -25.16 -0.17 -1.52 16 6 C 0.07 0.81 3.27 -25.95 -0.08 0.72 16 7 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 8 C -0.09 -1.19 4.14 -26.73 -0.11 -1.30 16 9 C -0.14 -1.93 5.62 -27.89 -0.16 -2.08 16 10 C 0.51 8.94 7.83 -10.99 -0.09 8.86 16 11 O -0.56 -11.61 15.98 5.55 0.09 -11.52 16 12 N -0.70 -12.45 5.23 -60.29 -0.32 -12.77 16 13 C 0.12 2.23 4.04 -4.04 -0.02 2.21 16 14 C 0.19 3.46 0.68 -130.70 -0.09 3.38 16 15 N -0.71 -16.03 4.53 -46.20 -0.21 -16.24 16 16 C -0.23 -6.00 8.52 -15.06 -0.13 -6.13 16 17 H 0.07 1.78 7.27 -52.48 -0.38 1.40 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.69 13.07 55.49 0.73 -25.96 16 20 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C -0.12 -1.92 5.72 -25.03 -0.14 -2.06 16 25 C -0.12 -1.75 6.91 -24.69 -0.17 -1.92 16 26 C -0.12 -1.78 6.83 -25.07 -0.17 -1.96 16 27 C -0.13 -2.31 5.93 -25.62 -0.15 -2.46 16 28 O -0.37 -4.41 10.69 -35.23 -0.38 -4.79 16 29 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 34 H 0.08 0.71 7.87 -51.93 -0.41 0.31 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.09 1.24 7.91 -51.93 -0.41 0.83 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.40 6.97 7.99 -40.82 -0.33 6.64 16 41 H 0.06 1.29 7.46 -51.93 -0.39 0.90 16 42 H 0.05 0.96 8.05 -51.93 -0.42 0.54 16 43 H 0.38 9.24 7.44 -40.82 -0.30 8.94 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.06 0.93 7.79 -51.93 -0.40 0.52 16 46 H 0.07 1.05 7.71 -51.93 -0.40 0.65 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.08 1.69 7.36 -51.93 -0.38 1.30 16 52 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 LS Contribution 406.65 15.07 6.13 6.13 Total: -1.00 -30.12 406.65 -10.15 -40.27 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -9.68 Total: 14.10 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.49 Total: -6.22 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.20 Total: -54.96 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.29 Total: -16.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.12 -10.15 -40.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.515 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds