Wall clock time and date at job start Tue Mar 31 2020 15:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.35520 * 2 1 4 4 C 1.54942 * 110.31268 * 237.85514 * 2 1 3 5 5 C 1.55531 * 100.95431 * 204.61989 * 4 2 1 6 6 C 1.54390 * 102.14324 * 34.15413 * 5 4 2 7 7 H 1.09001 * 109.82952 * 98.17865 * 6 5 4 8 8 C 1.53004 * 109.82702 * 219.05323 * 6 5 4 9 9 C 1.53005 * 109.46921 * 184.81501 * 8 6 5 10 10 C 1.50701 * 109.46876 * 180.02562 * 9 8 6 11 11 O 1.21271 * 120.00284 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99590 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00043 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47531 * 175.12270 * 13 12 10 15 15 N 1.46498 * 110.01503 * 303.90639 * 14 13 12 16 16 C 1.36932 * 120.00236 * 301.51714 * 15 14 13 17 17 H 1.08002 * 119.99606 * 354.62200 * 16 15 14 18 18 C 1.38808 * 120.00265 * 174.61553 * 16 15 14 19 19 N 1.31619 * 119.99988 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00005 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47213 * 59.99975 * 20 18 16 22 22 H 1.48498 * 109.47028 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46878 * 299.99801 * 20 18 16 24 24 C 1.54265 * 110.03232 * 182.51017 * 14 13 12 25 25 C 1.54968 * 104.15789 * 217.13955 * 24 14 13 26 26 C 1.54883 * 102.77944 * 37.88817 * 25 24 14 27 27 C 1.53879 * 110.02668 * 65.29585 * 14 13 12 28 28 O 1.43227 * 107.66593 * 338.61141 * 6 5 4 29 29 H 1.08999 * 109.47324 * 299.31528 * 1 2 3 30 30 H 1.09003 * 109.46765 * 59.31260 * 1 2 3 31 31 H 1.08996 * 109.47025 * 179.30788 * 1 2 3 32 32 H 1.09006 * 111.12680 * 322.56470 * 4 2 1 33 33 H 1.09005 * 111.12346 * 86.67865 * 4 2 1 34 34 H 1.08999 * 110.88878 * 276.00698 * 5 4 2 35 35 H 1.09003 * 110.91244 * 152.30852 * 5 4 2 36 36 H 1.08998 * 109.47378 * 304.81416 * 8 6 5 37 37 H 1.09002 * 109.47031 * 64.81576 * 8 6 5 38 38 H 1.08998 * 109.47025 * 300.00131 * 9 8 6 39 39 H 1.08991 * 109.46922 * 59.99816 * 9 8 6 40 40 H 0.96999 * 120.00567 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.47092 * 295.12771 * 13 12 10 42 42 H 1.09002 * 109.46637 * 55.12760 * 13 12 10 43 43 H 0.97005 * 119.99862 * 121.52338 * 15 14 13 44 44 H 0.97004 * 119.99863 * 180.02562 * 19 18 16 45 45 H 1.08993 * 110.48811 * 335.78643 * 24 14 13 46 46 H 1.08998 * 110.48378 * 98.43620 * 24 14 13 47 47 H 1.09004 * 110.71887 * 279.57450 * 25 24 14 48 48 H 1.08993 * 110.76223 * 156.22442 * 25 24 14 49 49 H 1.09003 * 110.49070 * 203.40510 * 26 25 24 50 50 H 1.08999 * 110.48903 * 80.75948 * 26 25 24 51 51 H 1.09006 * 110.03138 * 238.56893 * 27 14 13 52 52 H 1.08999 * 110.03302 * 359.94914 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0679 -0.7731 -1.2303 5 6 3.4723 -1.2028 -0.7185 6 6 3.2111 -1.4420 0.7842 7 1 3.0624 -2.5059 0.9689 8 6 4.3986 -0.9341 1.6046 9 6 4.1860 -1.2825 3.0792 10 6 5.3553 -0.7816 3.8873 11 8 6.2688 -0.2035 3.3379 12 7 5.3861 -0.9772 5.2204 13 6 6.5230 -0.4909 6.0060 14 6 6.2554 -0.7308 7.4932 15 7 4.9952 -0.0947 7.8849 16 6 4.8266 1.2534 7.7139 17 1 5.6510 1.8616 7.3722 18 6 3.5961 1.8382 7.9797 19 7 2.5915 1.0971 8.3965 20 14 3.3660 3.6772 7.7458 21 1 3.6340 4.0334 6.3293 22 1 1.9716 4.0500 8.0951 23 1 4.3095 4.4103 8.6276 24 6 7.4170 -0.1665 8.3370 25 6 7.5767 -1.1867 9.4924 26 6 7.3227 -2.5432 8.7893 27 6 6.1951 -2.2413 7.7808 28 8 2.0286 -0.7168 1.1407 29 1 -0.3634 0.5031 0.8960 30 1 -0.3633 0.5245 -0.8838 31 1 -0.3633 -1.0276 -0.0124 32 1 1.4471 -1.6416 -1.4508 33 1 2.1490 -0.1205 -2.0997 34 1 4.1998 -0.4042 -0.8635 35 1 3.8000 -2.1209 -1.2062 36 1 5.3145 -1.4054 1.2483 37 1 4.4800 0.1473 1.4948 38 1 3.2700 -0.8111 3.4354 39 1 4.1045 -2.3638 3.1889 40 1 4.6556 -1.4399 5.6598 41 1 7.4254 -1.0250 5.7084 42 1 6.6572 0.5762 5.8286 43 1 4.2802 -0.6285 8.2654 44 1 1.7315 1.5057 8.5819 45 1 8.3300 -0.1161 7.7438 46 1 7.1607 0.8178 8.7289 47 1 6.8330 -1.0091 10.2693 48 1 8.5847 -1.1483 9.9052 49 1 6.9981 -3.2924 9.5115 50 1 8.2204 -2.8772 8.2691 51 1 5.2285 -2.5009 8.2127 52 1 6.3557 -2.8033 6.8607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:20 Heat of formation + Delta-G solvation = -100.867990 kcal Electronic energy + Delta-G solvation = -28609.628306 eV Core-core repulsion = 24800.974275 eV Total energy + Delta-G solvation = -3808.654031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.87100 -39.23114 -38.05511 -34.07210 -33.72533 -33.22954 -32.35813 -30.90163 -30.40730 -28.25351 -27.93570 -26.40800 -24.42998 -23.33640 -22.60242 -21.66236 -20.62623 -20.26191 -19.47479 -18.50001 -17.12724 -16.96646 -16.67480 -15.90602 -15.65541 -15.06452 -14.96860 -14.64554 -14.37595 -14.04542 -13.80484 -13.66144 -13.30984 -13.27765 -13.08390 -12.73576 -12.59088 -12.38999 -12.28940 -11.83713 -11.74477 -11.69538 -11.41809 -11.11805 -11.07680 -10.94204 -10.86157 -10.72630 -10.71188 -10.69207 -10.60771 -10.50748 -10.21337 -10.12040 -9.83449 -9.60994 -9.52181 -9.27193 -8.86274 -8.30864 -6.97495 -5.77231 -3.05923 3.23532 3.45518 3.50082 3.52069 3.66357 3.85899 4.33121 4.57484 4.59628 4.65562 4.98854 5.00869 5.09374 5.13830 5.16448 5.20547 5.25898 5.33129 5.41989 5.44244 5.52992 5.57843 5.58889 5.63831 5.72048 5.72840 5.81262 5.86938 5.91473 5.96210 5.97477 5.97946 6.03970 6.10764 6.20716 6.28837 6.29108 6.33431 6.37381 6.47605 6.59617 6.65919 6.79528 6.85937 7.04975 7.06112 7.20104 7.73682 8.20053 8.41524 8.85538 9.53317 10.07212 10.42608 11.44816 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003407 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.796123 B = 8216.171716 C = 9960.719865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.079 0.921 8 C -0.109 4.109 9 C -0.137 4.137 10 C 0.509 3.491 11 O -0.563 6.563 12 N -0.701 5.701 13 C 0.120 3.880 14 C 0.189 3.811 15 N -0.710 5.710 16 C -0.232 4.232 17 H 0.068 0.932 18 C -0.007 4.007 19 N -0.931 5.931 20 Si 0.900 3.100 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.126 4.126 28 O -0.370 6.370 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.402 0.598 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 -9.361 -13.763 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.189 4.189 6 C 0.022 3.978 7 H 0.097 0.903 8 C -0.147 4.147 9 C -0.177 4.177 10 C 0.296 3.704 11 O -0.443 6.443 12 N -0.350 5.350 13 C -0.006 4.006 14 C 0.097 3.903 15 N -0.352 5.352 16 C -0.364 4.364 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.580 5.580 20 Si 0.731 3.269 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.164 4.164 28 O -0.290 6.290 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.236 0.764 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.165 -8.767 -13.965 16.630 hybrid contribution -0.717 0.797 0.074 1.075 sum 1.449 -7.970 -13.891 16.080 Atomic orbital electron populations 1.21879 0.93854 1.02652 1.02437 1.22946 0.94774 0.95746 0.84916 0.91311 1.23358 0.96341 1.00790 0.98490 1.23210 0.97668 1.02701 0.95337 1.22790 0.85653 0.96034 0.93287 0.90342 1.21694 0.96843 1.02775 0.93431 1.21580 0.98417 1.02235 0.95442 1.20592 0.87726 0.79372 0.82733 1.90624 1.39066 1.43300 1.71314 1.45753 1.24150 1.58375 1.06725 1.21840 0.87001 0.99514 0.92251 1.20460 0.88694 0.90678 0.90512 1.42531 1.12233 1.06173 1.74245 1.19030 0.95380 0.84283 1.37663 0.91397 1.24662 0.95907 0.97531 1.02238 1.69635 1.02082 1.34316 1.51925 0.86372 0.76715 0.85845 0.77919 1.21323 1.21773 1.21342 1.22842 0.97646 1.00063 0.96672 1.22396 1.00235 0.94670 0.98152 1.22299 0.98142 0.97515 0.97861 1.22429 0.99170 0.96059 0.98704 1.88495 1.41969 1.64662 1.33867 0.91641 0.91509 0.92040 0.90437 0.90189 0.90198 0.90122 0.90526 0.90786 0.88182 0.89650 0.76361 0.93398 0.91688 0.78136 0.93555 0.92980 0.90315 0.91417 0.92768 0.92385 0.92329 0.91316 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.62 37.16 0.36 -1.05 16 2 C 0.07 0.79 4.08 -25.71 -0.10 0.68 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.15 -1.27 6.58 -24.36 -0.16 -1.43 16 5 C -0.15 -1.36 6.56 -24.66 -0.16 -1.52 16 6 C 0.08 0.91 3.51 -26.00 -0.09 0.82 16 7 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 8 C -0.11 -1.46 4.07 -26.73 -0.11 -1.57 16 9 C -0.14 -2.00 5.61 -27.88 -0.16 -2.16 16 10 C 0.51 9.36 7.83 -10.99 -0.09 9.27 16 11 O -0.56 -12.07 15.98 5.57 0.09 -11.99 16 12 N -0.70 -12.78 5.10 -60.29 -0.31 -13.08 16 13 C 0.12 2.29 3.99 -4.04 -0.02 2.27 16 14 C 0.19 3.48 0.68 -130.70 -0.09 3.40 16 15 N -0.71 -16.21 4.76 -46.20 -0.22 -16.43 16 16 C -0.23 -6.11 8.39 -15.06 -0.13 -6.24 16 17 H 0.07 1.81 7.22 -52.49 -0.38 1.43 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 20 Si 0.90 22.54 29.55 -169.99 -5.02 17.52 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C -0.13 -2.32 5.95 -25.03 -0.15 -2.47 16 25 C -0.12 -1.78 6.91 -24.70 -0.17 -1.95 16 26 C -0.12 -1.65 6.83 -25.08 -0.17 -1.83 16 27 C -0.13 -1.94 5.80 -25.61 -0.15 -2.09 16 28 O -0.37 -4.99 10.32 -35.23 -0.36 -5.35 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.10 1.59 7.89 -51.93 -0.41 1.18 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.40 7.05 7.99 -40.82 -0.33 6.72 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.44 7.48 -51.93 -0.39 1.05 16 43 H 0.38 9.37 7.28 -40.82 -0.30 9.08 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 46 H 0.08 1.58 7.12 -51.93 -0.37 1.21 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.07 1.10 7.44 -51.93 -0.39 0.72 16 52 H 0.06 0.87 7.54 -51.93 -0.39 0.48 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -30.95 406.08 -10.11 -41.07 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -9.65 Total: 14.63 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.48 Total: -6.15 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.20 Total: -55.84 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.27 Total: -17.34 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.95 -10.11 -41.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.801 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds