Wall clock time and date at job start Tue Mar 31 2020 15:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.27417 * 2 1 4 4 C 1.54939 * 110.30961 * 122.09642 * 2 1 3 5 5 C 1.55302 * 100.94596 * 155.35748 * 4 2 1 6 6 C 1.54380 * 102.25245 * 325.87035 * 5 4 2 7 7 H 1.08998 * 109.82702 * 261.74923 * 6 5 4 8 8 C 1.52998 * 109.83477 * 140.86739 * 6 5 4 9 9 C 1.52999 * 109.47167 * 174.99795 * 8 6 5 10 10 C 1.50701 * 109.46757 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00409 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99820 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00171 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47046 * 184.98424 * 13 12 10 15 15 N 1.46496 * 110.01821 * 303.76722 * 14 13 12 16 16 C 1.36938 * 119.99992 * 299.91191 * 15 14 13 17 17 H 1.08008 * 120.00188 * 354.59007 * 16 15 14 18 18 C 1.38816 * 120.00390 * 174.58603 * 16 15 14 19 19 N 1.31617 * 119.99571 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00330 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47035 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46910 * 120.00264 * 20 18 16 23 23 H 1.48503 * 109.47062 * 240.00161 * 20 18 16 24 24 C 1.54271 * 110.02932 * 182.32506 * 14 13 12 25 25 C 1.54884 * 104.19467 * 217.10504 * 24 14 13 26 26 C 1.54891 * 102.74916 * 37.94317 * 25 24 14 27 27 C 1.53872 * 110.03023 * 65.16199 * 14 13 12 28 28 O 1.43232 * 107.58885 * 21.34911 * 6 5 4 29 29 H 1.08992 * 109.46990 * 297.90664 * 1 2 3 30 30 H 1.09004 * 109.46779 * 57.90302 * 1 2 3 31 31 H 1.09000 * 109.47133 * 177.90255 * 1 2 3 32 32 H 1.09001 * 111.12731 * 37.43908 * 4 2 1 33 33 H 1.09001 * 111.12482 * 273.28192 * 4 2 1 34 34 H 1.08993 * 110.85377 * 207.67410 * 5 4 2 35 35 H 1.09006 * 111.02171 * 84.13696 * 5 4 2 36 36 H 1.09004 * 109.47050 * 54.99675 * 8 6 5 37 37 H 1.09000 * 109.47065 * 295.00102 * 8 6 5 38 38 H 1.08988 * 109.47095 * 60.00267 * 9 8 6 39 39 H 1.08998 * 109.46872 * 300.00046 * 9 8 6 40 40 H 0.97006 * 120.00133 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.46739 * 64.98462 * 13 12 10 42 42 H 1.08997 * 109.47298 * 304.98761 * 13 12 10 43 43 H 0.97000 * 120.00391 * 119.90897 * 15 14 13 44 44 H 0.97004 * 120.00189 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.48630 * 335.78386 * 24 14 13 46 46 H 1.09002 * 110.48248 * 98.42364 * 24 14 13 47 47 H 1.09004 * 110.75790 * 279.62621 * 25 24 14 48 48 H 1.09003 * 110.75549 * 156.25656 * 25 24 14 49 49 H 1.09001 * 110.48763 * 203.38144 * 26 25 24 50 50 H 1.09000 * 110.48568 * 80.73591 * 26 25 24 51 51 H 1.09005 * 110.02815 * 238.56748 * 27 14 13 52 52 H 1.08999 * 110.03627 * 359.94343 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7721 1.2310 5 6 3.4699 -1.2020 0.7199 6 6 3.2113 -1.4426 -0.7829 7 1 3.0640 -2.5068 -0.9670 8 6 4.3991 -0.9339 -1.6021 9 6 4.1912 -1.2877 -3.0760 10 6 5.3615 -0.7871 -3.8826 11 8 6.2720 -0.2043 -3.3330 12 7 5.3964 -0.9872 -5.2150 13 6 6.5339 -0.5000 -5.9994 14 6 6.2695 -0.7436 -7.4866 15 7 6.0017 -2.1644 -7.7223 16 6 6.9493 -3.1013 -7.4068 17 1 7.9256 -2.7886 -7.0667 18 6 6.6553 -4.4529 -7.5241 19 7 5.4658 -4.8339 -7.9390 20 14 7.9482 -5.7308 -7.0945 21 1 9.1926 -5.0484 -6.6575 22 1 7.4453 -6.5937 -5.9955 23 1 8.2343 -6.5663 -8.2884 24 6 7.4847 -0.2883 -8.3208 25 6 6.8602 0.3204 -9.6008 26 6 5.6027 1.0432 -9.0571 27 6 5.0729 0.1031 -7.9547 28 8 2.0286 -0.7178 -1.1400 29 1 -0.3633 0.4809 0.9081 30 1 -0.3633 0.5461 -0.8706 31 1 -0.3633 -1.0270 -0.0376 32 1 1.4471 -1.6404 1.4521 33 1 2.1496 -0.1186 2.0996 34 1 3.7966 -2.1196 1.2091 35 1 4.2001 -0.4059 0.8653 36 1 5.3156 -1.4013 -1.2419 37 1 4.4771 0.1481 -1.4956 38 1 3.2748 -0.8203 -3.4360 39 1 4.1132 -2.3697 -3.1823 40 1 4.6680 -1.4530 -5.6548 41 1 7.4366 -1.0318 -5.6990 42 1 6.6657 0.5676 -5.8238 43 1 5.1531 -2.4417 -8.1017 44 1 5.2601 -5.7783 -8.0207 45 1 8.0577 0.4652 -7.7804 46 1 8.1156 -1.1408 -8.5724 47 1 6.5810 -0.4635 -10.3049 48 1 7.5444 1.0314 -10.0639 49 1 4.8602 1.1624 -9.8461 50 1 5.8718 2.0118 -8.6356 51 1 4.2933 -0.5432 -8.3581 52 1 4.6800 0.6867 -7.1223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:23 Heat of formation + Delta-G solvation = -101.878911 kcal Electronic energy + Delta-G solvation = -28469.949381 eV Core-core repulsion = 24661.251514 eV Total energy + Delta-G solvation = -3808.697868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92444 -39.25765 -38.06894 -34.09228 -33.76426 -33.25097 -32.42079 -30.94395 -30.44505 -28.25280 -27.95978 -26.44510 -24.44134 -23.37699 -22.62532 -21.70923 -20.64359 -20.26839 -19.50344 -18.50898 -17.17742 -16.98712 -16.68977 -15.88866 -15.73573 -15.16576 -14.92780 -14.65426 -14.42506 -14.06518 -13.85875 -13.67055 -13.32670 -13.29705 -13.20942 -12.75702 -12.59283 -12.41714 -12.33806 -11.89223 -11.76853 -11.69125 -11.44759 -11.15716 -11.11657 -10.97704 -10.90032 -10.77013 -10.74079 -10.69879 -10.61517 -10.48867 -10.21328 -10.11340 -9.84453 -9.64676 -9.58598 -9.29832 -8.90177 -8.32097 -7.00974 -5.80973 -3.09813 3.20816 3.40860 3.48614 3.49374 3.59844 3.83419 4.30183 4.52194 4.56123 4.62498 4.93653 4.96312 5.08850 5.12515 5.14601 5.16817 5.26116 5.28673 5.36343 5.38582 5.49671 5.56151 5.57943 5.60969 5.70643 5.72491 5.78123 5.83031 5.89761 5.92642 5.95638 5.97265 5.98335 6.11898 6.21131 6.23081 6.29566 6.33805 6.34674 6.47940 6.59490 6.65232 6.79792 6.85010 6.99004 7.03956 7.18805 7.71273 8.19516 8.37867 8.83127 9.49585 10.03928 10.39407 11.41145 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.003065 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.063880 B = 9132.789069 C =10506.605417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.068 0.932 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.079 3.921 7 H 0.081 0.919 8 C -0.109 4.109 9 C -0.137 4.137 10 C 0.508 3.492 11 O -0.564 6.564 12 N -0.702 5.702 13 C 0.120 3.880 14 C 0.189 3.811 15 N -0.712 5.712 16 C -0.231 4.231 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.901 3.099 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.131 4.131 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.125 4.125 28 O -0.372 6.372 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.404 0.596 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.052 0.948 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 10.788 12.260 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.086 0.914 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.022 3.978 7 H 0.099 0.901 8 C -0.147 4.147 9 C -0.177 4.177 10 C 0.294 3.706 11 O -0.444 6.444 12 N -0.351 5.351 13 C -0.006 4.006 14 C 0.097 3.903 15 N -0.353 5.353 16 C -0.362 4.362 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.732 3.268 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.172 4.172 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.163 4.163 28 O -0.292 6.292 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.239 0.761 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.349 11.080 12.482 18.237 hybrid contribution 0.261 -1.267 0.066 1.295 sum -7.088 9.814 12.549 17.436 Atomic orbital electron populations 1.21882 0.93908 1.02815 1.02204 1.22931 0.94690 0.95632 0.85095 0.91413 1.23312 0.96426 1.00832 0.98422 1.23167 0.97597 1.02843 0.95348 1.22812 0.85443 0.96246 0.93305 0.90088 1.21687 0.97063 1.02423 0.93495 1.21581 0.97760 1.02980 0.95384 1.20620 0.87913 0.79396 0.82662 1.90628 1.39232 1.43532 1.71033 1.45817 1.24344 1.57978 1.06993 1.21841 0.89142 0.97056 0.92600 1.20461 0.92890 0.86247 0.90737 1.42575 1.18895 0.98747 1.75104 1.19141 0.93915 0.86389 1.36784 0.91214 1.24687 0.96636 0.96952 1.02277 1.69659 1.20083 1.15065 1.53133 0.86210 0.80967 0.82054 0.77546 1.20590 1.21982 1.21978 1.22814 0.98464 1.00089 0.95799 1.22385 0.96273 0.98852 0.97928 1.22304 0.97654 0.98100 0.97785 1.22414 0.98140 0.97740 0.97976 1.88459 1.42173 1.64656 1.33926 0.91498 0.91870 0.91921 0.90379 0.90179 0.90041 0.90216 0.90334 0.90966 0.88737 0.89051 0.76055 0.92057 0.92985 0.78125 0.93636 0.92947 0.90290 0.91406 0.92760 0.92385 0.92327 0.91349 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.62 37.16 0.36 -0.82 16 2 C 0.07 0.69 4.08 -25.71 -0.10 0.59 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -1.17 6.57 -24.49 -0.16 -1.34 16 5 C -0.15 -1.33 6.55 -24.79 -0.16 -1.49 16 6 C 0.08 0.88 3.51 -26.01 -0.09 0.79 16 7 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 8 C -0.11 -1.42 4.07 -26.73 -0.11 -1.52 16 9 C -0.14 -1.97 5.61 -27.88 -0.16 -2.12 16 10 C 0.51 9.15 7.83 -10.99 -0.09 9.07 16 11 O -0.56 -11.83 15.98 5.56 0.09 -11.74 16 12 N -0.70 -12.75 5.09 -60.29 -0.31 -13.06 16 13 C 0.12 2.28 4.02 -4.04 -0.02 2.26 16 14 C 0.19 3.48 0.68 -130.70 -0.09 3.39 16 15 N -0.71 -16.04 4.63 -46.19 -0.21 -16.26 16 16 C -0.23 -5.96 8.39 -15.06 -0.13 -6.09 16 17 H 0.07 1.82 7.21 -52.48 -0.38 1.44 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -26.64 13.06 55.49 0.72 -25.92 16 20 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C -0.13 -2.30 5.93 -25.07 -0.15 -2.45 16 25 C -0.12 -1.78 6.91 -24.74 -0.17 -1.95 16 26 C -0.12 -1.69 6.83 -25.07 -0.17 -1.86 16 27 C -0.12 -1.96 5.93 -25.62 -0.15 -2.12 16 28 O -0.37 -4.52 10.34 -35.23 -0.36 -4.89 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 36 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.09 1.28 7.89 -51.94 -0.41 0.87 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.40 7.23 8.00 -40.82 -0.33 6.91 16 41 H 0.06 1.33 7.57 -51.93 -0.39 0.93 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.38 9.28 7.28 -40.82 -0.30 8.98 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.05 0.84 7.85 -51.93 -0.41 0.44 16 46 H 0.08 1.57 7.01 -51.93 -0.36 1.21 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.07 1.12 7.44 -51.93 -0.39 0.73 16 52 H 0.06 0.91 7.54 -51.93 -0.39 0.52 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -30.11 406.05 -10.11 -40.22 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -9.65 Total: 14.51 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.48 Total: -6.03 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.20 Total: -55.23 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.28 Total: -16.63 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.11 -10.11 -40.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.655 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds