Wall clock time and date at job start Tue Mar 31 2020 15:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.67155 * 2 1 4 4 C 1.54994 * 110.61822 * 237.03708 * 2 1 3 5 5 C 1.54812 * 102.09347 * 204.47461 * 4 2 1 6 6 C 1.54101 * 104.18273 * 20.87853 * 5 4 2 7 7 H 1.09003 * 109.88117 * 242.45111 * 6 5 4 8 8 C 1.53002 * 109.87933 * 121.45551 * 6 5 4 9 9 C 1.52997 * 109.47470 * 174.99509 * 8 6 5 10 10 C 1.50698 * 109.47246 * 180.02562 * 9 8 6 11 11 O 1.21284 * 119.99940 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00158 * 180.02562 * 10 9 8 13 13 C 1.46491 * 120.00305 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47566 * 184.83416 * 13 12 10 15 15 N 1.46499 * 110.53986 * 302.68287 * 14 13 12 16 16 C 1.36940 * 119.99686 * 302.32894 * 15 14 13 17 17 H 1.08002 * 120.00130 * 354.65373 * 16 15 14 18 18 C 1.38814 * 119.99763 * 174.64782 * 16 15 14 19 19 N 1.31619 * 119.99801 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00243 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47442 * 89.99556 * 20 18 16 22 22 H 1.48502 * 109.47297 * 209.99688 * 20 18 16 23 23 H 1.48502 * 109.46976 * 329.99605 * 20 18 16 24 24 C 1.54888 * 110.49001 * 180.02562 * 14 13 12 25 25 C 1.54889 * 102.75111 * 203.37963 * 24 14 13 26 26 C 1.54272 * 104.19312 * 37.94638 * 25 24 14 27 27 C 1.53873 * 106.59854 * 336.38816 * 26 25 24 28 28 O 1.43741 * 107.29831 * 2.03024 * 6 5 4 29 29 H 1.09001 * 109.47490 * 182.96346 * 1 2 3 30 30 H 1.08998 * 109.47489 * 302.96777 * 1 2 3 31 31 H 1.09007 * 109.46904 * 62.96272 * 1 2 3 32 32 H 1.08998 * 110.91090 * 86.27653 * 4 2 1 33 33 H 1.08996 * 110.93760 * 322.68666 * 4 2 1 34 34 H 1.08998 * 110.48994 * 262.20638 * 5 4 2 35 35 H 1.08992 * 110.59964 * 139.60947 * 5 4 2 36 36 H 1.09002 * 109.46861 * 54.99832 * 8 6 5 37 37 H 1.09000 * 109.47069 * 295.00363 * 8 6 5 38 38 H 1.09002 * 109.46815 * 60.00294 * 9 8 6 39 39 H 1.08999 * 109.47153 * 300.00501 * 9 8 6 40 40 H 0.97000 * 119.99929 * 359.97438 * 12 10 9 41 41 H 1.09005 * 109.46825 * 64.83579 * 13 12 10 42 42 H 1.09004 * 109.47614 * 304.83759 * 13 12 10 43 43 H 0.96998 * 120.00326 * 122.33666 * 15 14 13 44 44 H 0.97002 * 119.99729 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.75525 * 85.06873 * 24 14 13 46 46 H 1.08994 * 110.75781 * 321.70088 * 24 14 13 47 47 H 1.08994 * 110.48798 * 279.26560 * 25 24 14 48 48 H 1.09003 * 110.48565 * 156.62047 * 25 24 14 49 49 H 1.08998 * 110.03382 * 95.67292 * 26 25 24 50 50 H 1.09002 * 110.03078 * 217.10171 * 26 25 24 51 51 H 1.09002 * 110.03314 * 119.28334 * 27 26 25 52 52 H 1.09004 * 110.03178 * 240.67108 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0758 -0.7893 -1.2171 5 6 3.4795 -1.2167 -0.7236 6 6 3.3839 -1.1253 0.8118 7 1 4.0872 -0.3801 1.1833 8 6 3.6934 -2.4883 1.4343 9 6 3.7187 -2.3589 2.9586 10 6 4.0242 -3.7012 3.5717 11 8 4.2036 -4.6664 2.8596 12 7 4.0971 -3.8293 4.9114 13 6 4.3935 -5.1342 5.5075 14 6 4.2997 -5.0322 7.0311 15 7 5.2128 -4.0031 7.5346 16 6 6.5533 -4.0873 7.2676 17 1 6.9496 -4.9549 6.7611 18 6 7.4027 -3.0574 7.6480 19 7 8.6910 -3.1380 7.3910 20 14 6.7173 -1.5570 8.5247 21 1 6.7427 -1.7862 9.9917 22 1 7.5458 -0.3695 8.1948 23 1 5.3186 -1.3224 8.0844 24 6 4.6099 -6.4009 7.6863 25 6 3.9026 -6.2907 9.0598 26 6 2.5983 -5.5258 8.7533 27 6 2.8508 -4.7256 7.4635 28 8 2.0384 -0.7352 1.1337 29 1 -0.3634 -1.0263 0.0531 30 1 -0.3634 0.5592 0.8621 31 1 -0.3633 0.4672 -0.9154 32 1 2.1509 -0.1476 -2.0950 33 1 1.4552 -1.6605 -1.4265 34 1 4.2407 -0.5331 -1.0997 35 1 3.6997 -2.2386 -1.0320 36 1 4.6650 -2.8358 1.0831 37 1 2.9245 -3.2038 1.1430 38 1 2.7471 -2.0113 3.3098 39 1 4.4876 -1.6433 3.2498 40 1 3.9532 -3.0574 5.4810 41 1 5.4003 -5.4422 5.2253 42 1 3.6742 -5.8699 5.1476 43 1 4.8679 -3.2622 8.0571 44 1 9.2846 -2.4185 7.6571 45 1 5.6843 -6.5331 7.8147 46 1 4.1871 -7.2154 7.0982 47 1 4.5183 -5.7288 9.7620 48 1 3.6796 -7.2819 9.4547 49 1 1.7796 -6.2293 8.6020 50 1 2.3617 -4.8476 9.5732 51 1 2.1547 -5.0408 6.6862 52 1 2.7360 -3.6591 7.6572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670398.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:25 Heat of formation + Delta-G solvation = -98.231622 kcal Electronic energy + Delta-G solvation = -28529.805713 eV Core-core repulsion = 24721.266004 eV Total energy + Delta-G solvation = -3808.539709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.92291 -39.30882 -38.17336 -34.17103 -33.81498 -33.25904 -32.42422 -31.06020 -30.66522 -28.46653 -28.31129 -26.57858 -24.39211 -23.17300 -22.62380 -21.46760 -20.99094 -20.27537 -19.57175 -18.62697 -17.56315 -16.85797 -16.60153 -16.11412 -15.74352 -15.15834 -15.02152 -14.81221 -14.51347 -14.29154 -14.11086 -13.67478 -13.42081 -13.13875 -13.04972 -12.78132 -12.70381 -12.52063 -12.32798 -11.99133 -11.87142 -11.72389 -11.67539 -11.24549 -11.17611 -11.00067 -10.94083 -10.89266 -10.78310 -10.70314 -10.66997 -10.48755 -10.32711 -10.09695 -9.96155 -9.76942 -9.56146 -9.35744 -8.92119 -8.38280 -7.32502 -5.79228 -3.16152 3.16023 3.31376 3.34897 3.41949 3.60835 3.74894 4.35861 4.47032 4.54765 4.69731 4.76544 4.94697 5.02072 5.05163 5.05504 5.11397 5.11995 5.25393 5.31103 5.35044 5.38450 5.48145 5.55540 5.57541 5.60099 5.67184 5.73065 5.78559 5.85300 5.87047 5.89099 5.91143 5.91453 6.06422 6.14691 6.17106 6.21264 6.28613 6.30657 6.39181 6.50061 6.57423 6.71436 6.77203 6.83869 6.96063 7.10250 7.96862 8.10834 8.39569 8.76898 9.16862 9.88644 10.07791 11.38838 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.003043 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.298657 B = 9199.909323 C =10094.556498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.076 3.924 7 H 0.069 0.931 8 C -0.098 4.098 9 C -0.139 4.139 10 C 0.509 3.491 11 O -0.559 6.559 12 N -0.705 5.705 13 C 0.122 3.878 14 C 0.194 3.806 15 N -0.734 5.734 16 C -0.237 4.237 17 H 0.091 0.909 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.880 3.120 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.277 1.277 24 C -0.130 4.130 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.126 4.126 28 O -0.369 6.369 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.400 0.600 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.066 0.934 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.388 4.184 -11.328 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.188 4.188 5 C -0.191 4.191 6 C 0.018 3.982 7 H 0.087 0.913 8 C -0.135 4.135 9 C -0.179 4.179 10 C 0.296 3.704 11 O -0.438 6.438 12 N -0.354 5.354 13 C -0.004 4.004 14 C 0.103 3.897 15 N -0.377 5.377 16 C -0.367 4.367 17 H 0.109 0.891 18 C -0.188 4.188 19 N -0.579 5.579 20 Si 0.711 3.289 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.204 1.204 24 C -0.170 4.170 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.165 4.165 28 O -0.288 6.288 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.234 0.766 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.129 3.390 -11.702 20.213 hybrid contribution -0.107 1.665 0.866 1.879 sum -16.236 5.055 -10.836 20.164 Atomic orbital electron populations 1.21767 0.93332 1.03020 1.02220 1.23100 0.95094 0.95265 0.85313 0.91473 1.23170 0.96503 1.00768 0.98382 1.22994 0.97522 1.03154 0.95403 1.22814 0.84644 0.96767 0.93974 0.91263 1.21503 1.03257 0.95142 0.93638 1.21614 1.04020 0.95713 0.96552 1.20581 0.76746 0.90657 0.82463 1.90644 1.51117 1.40840 1.61221 1.45770 1.70690 1.12726 1.06222 1.21745 1.00812 0.83874 0.93952 1.20585 0.88686 0.90181 0.90297 1.42765 1.04745 1.26437 1.63754 1.18941 0.81441 1.03937 1.32354 0.89120 1.24652 0.95284 0.97845 1.01042 1.69698 1.02349 1.33804 1.52020 0.86635 0.78057 0.84210 0.80012 1.21260 1.21954 1.20364 1.22866 1.01703 0.96883 0.95549 1.22218 0.95891 0.98960 0.98168 1.22084 0.97909 0.98533 0.97257 1.22426 0.96662 1.00012 0.97350 1.88909 1.27883 1.73330 1.38725 0.91711 0.91898 0.91335 0.90506 0.90445 0.90696 0.90029 0.89971 0.90601 0.88782 0.89097 0.76567 0.91328 0.92638 0.80535 0.93114 0.90238 0.92546 0.91348 0.92791 0.92534 0.92535 0.91573 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.66 37.16 0.36 -0.75 16 2 C 0.07 0.63 3.98 -25.68 -0.10 0.52 16 3 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 4 C -0.15 -1.18 6.59 -24.72 -0.16 -1.35 16 5 C -0.15 -1.35 6.64 -25.20 -0.17 -1.52 16 6 C 0.08 0.83 3.41 -26.16 -0.09 0.74 16 7 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 8 C -0.10 -1.25 3.99 -26.73 -0.11 -1.36 16 9 C -0.14 -1.93 5.62 -27.89 -0.16 -2.08 16 10 C 0.51 8.96 7.83 -10.99 -0.09 8.88 16 11 O -0.56 -11.59 15.98 5.55 0.09 -11.50 16 12 N -0.70 -12.34 5.24 -60.30 -0.32 -12.66 16 13 C 0.12 2.26 4.27 -4.05 -0.02 2.24 16 14 C 0.19 3.43 0.52 -130.16 -0.07 3.36 16 15 N -0.73 -15.58 4.48 -45.70 -0.20 -15.79 16 16 C -0.24 -6.17 9.08 -15.06 -0.14 -6.31 16 17 H 0.09 2.61 7.36 -52.49 -0.39 2.23 16 18 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 19 N -0.93 -28.43 13.97 55.49 0.78 -27.66 16 20 Si 0.88 21.10 27.68 -169.99 -4.71 16.39 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.11 6.60 56.52 0.37 -5.74 16 24 C -0.13 -2.20 5.90 -24.74 -0.15 -2.35 16 25 C -0.11 -1.73 6.79 -25.07 -0.17 -1.90 16 26 C -0.12 -1.62 6.80 -25.61 -0.17 -1.80 16 27 C -0.13 -1.85 5.71 -25.61 -0.15 -2.00 16 28 O -0.37 -4.38 10.54 -35.23 -0.37 -4.75 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 36 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.09 1.21 7.91 -51.93 -0.41 0.80 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.40 6.66 8.07 -40.82 -0.33 6.34 16 41 H 0.07 1.49 7.45 -51.93 -0.39 1.10 16 42 H 0.06 0.97 8.07 -51.93 -0.42 0.56 16 43 H 0.36 7.62 5.41 -40.82 -0.22 7.40 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 45 H 0.08 1.56 7.29 -51.93 -0.38 1.18 16 46 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 52 H 0.06 0.90 7.76 -51.93 -0.40 0.49 16 LS Contribution 404.15 15.07 6.09 6.09 Total: -1.00 -31.55 404.15 -9.77 -41.32 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -9.65 Total: 14.11 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.47 Total: -5.56 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.25 Total: -56.10 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.28 Total: -16.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.55 -9.77 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670398.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.916 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds