Wall clock time and date at job start Tue Mar 31 2020 14:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46714 * 2 1 4 4 C 1.53000 * 109.46929 * 119.99514 * 2 1 3 5 5 N 1.46501 * 109.47400 * 175.00281 * 4 2 1 6 6 C 1.46505 * 119.99547 * 270.00210 * 5 4 2 7 7 C 1.36929 * 120.00147 * 89.99727 * 5 4 2 8 8 H 1.08006 * 120.00117 * 337.20952 * 7 5 4 9 9 C 1.38811 * 119.99966 * 156.93181 * 7 5 4 10 10 N 1.31620 * 120.00025 * 348.04760 * 9 7 5 11 11 Si 1.86804 * 119.99921 * 168.05129 * 9 7 5 12 12 H 1.48502 * 109.47104 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46801 * 119.99785 * 11 9 7 14 14 H 1.48500 * 109.47118 * 239.99718 * 11 9 7 15 15 N 1.46494 * 109.47230 * 239.99284 * 2 1 3 16 16 C 1.34783 * 119.99668 * 85.00133 * 15 2 1 17 17 O 1.21279 * 119.99960 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99817 * 179.97438 * 16 15 2 19 19 C 1.53003 * 109.46959 * 179.97438 * 18 16 15 20 20 H 1.09009 * 109.43197 * 55.09598 * 19 18 16 21 21 C 1.53070 * 109.43228 * 175.00160 * 19 18 16 22 22 C 1.53353 * 109.07936 * 179.48525 * 21 19 18 23 23 C 1.52853 * 108.74349 * 305.14679 * 22 21 19 24 24 C 1.53356 * 113.54151 * 282.26472 * 23 22 21 25 25 C 1.53855 * 86.94964 * 220.08339 * 24 23 22 26 26 C 1.53327 * 113.59639 * 184.28234 * 23 22 21 27 27 C 1.52759 * 112.68409 * 53.21396 * 23 22 21 28 28 O 1.42864 * 109.43583 * 295.23381 * 19 18 16 29 29 H 1.09001 * 109.46830 * 60.00618 * 1 2 3 30 30 H 1.08996 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47443 * 300.00196 * 1 2 3 32 32 H 1.09002 * 109.47134 * 55.00010 * 4 2 1 33 33 H 1.08999 * 109.47378 * 295.00070 * 4 2 1 34 34 H 1.08996 * 109.46820 * 264.84618 * 6 5 4 35 35 H 1.08999 * 109.47443 * 24.85154 * 6 5 4 36 36 H 1.09007 * 109.46545 * 144.85143 * 6 5 4 37 37 H 0.96997 * 119.99655 * 180.02562 * 10 9 7 38 38 H 0.96991 * 120.00505 * 265.00378 * 15 2 1 39 39 H 1.08992 * 109.47507 * 300.00320 * 18 16 15 40 40 H 1.08997 * 109.46890 * 60.00403 * 18 16 15 41 41 H 1.09006 * 109.53648 * 299.36278 * 21 19 18 42 42 H 1.08998 * 109.53849 * 59.60295 * 21 19 18 43 43 H 1.08996 * 109.59277 * 64.92405 * 22 21 19 44 44 H 1.09004 * 109.59087 * 185.22623 * 22 21 19 45 45 H 1.09000 * 113.63696 * 334.59894 * 24 23 22 46 46 H 1.09001 * 113.63687 * 105.57471 * 24 23 22 47 47 H 1.08998 * 113.60628 * 270.53993 * 25 24 23 48 48 H 1.08999 * 113.60151 * 139.67605 * 25 24 23 49 49 H 1.08996 * 113.63249 * 254.37821 * 26 23 22 50 50 H 1.08998 * 113.63330 * 25.34129 * 26 23 22 51 51 H 1.08998 * 109.52527 * 66.27225 * 27 23 22 52 52 H 1.09003 * 109.52573 * 186.40967 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.1258 -1.9920 0.5615 7 6 4.2798 0.1649 1.7241 8 1 3.8781 1.1597 1.8493 9 6 5.5847 -0.1101 2.1093 10 7 5.9996 -1.3569 2.1853 11 14 6.7520 1.2893 2.5200 12 1 6.0468 2.5860 2.3573 13 1 7.2165 1.1506 3.9237 14 1 7.9207 1.2438 1.6050 15 7 2.0184 -0.6907 -1.1960 16 6 2.1471 -0.0184 -2.3571 17 8 1.8591 1.1584 -2.4115 18 6 2.6500 -0.7288 -3.5873 19 6 2.7008 0.2541 -4.7588 20 1 3.3032 1.1190 -4.4807 21 6 3.3279 -0.4339 -5.9739 22 6 3.3630 0.5539 -7.1465 23 6 1.9489 1.0826 -7.3858 24 6 1.0439 0.0949 -8.1324 25 6 0.4988 1.3072 -8.9072 26 6 1.8367 2.0046 -8.6057 27 6 1.3136 1.6588 -6.1218 28 8 1.3756 0.6818 -5.0783 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 4.3656 -2.7320 1.3249 35 1 3.4374 -2.4271 -0.1630 36 1 5.0401 -1.6838 0.0543 37 1 6.9113 -1.5490 2.4548 38 1 2.2490 -1.6318 -1.1524 39 1 3.6493 -1.1206 -3.3977 40 1 1.9778 -1.5511 -3.8323 41 1 4.3432 -0.7479 -5.7314 42 1 2.7317 -1.3041 -6.2481 43 1 4.0275 1.3836 -6.9057 44 1 3.7220 0.0459 -8.0416 45 1 1.5902 -0.6127 -8.7561 46 1 0.3019 -0.3857 -7.4948 47 1 -0.3581 1.7815 -8.4288 48 1 0.3380 1.1113 -9.9673 49 1 1.7318 3.0586 -8.3486 50 1 2.6025 1.8259 -9.3604 51 1 1.8567 2.5531 -5.8162 52 1 0.2730 1.9147 -6.3212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754330302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:10 Heat of formation + Delta-G solvation = -52.785784 kcal Electronic energy + Delta-G solvation = -29027.640234 eV Core-core repulsion = 25221.071204 eV Total energy + Delta-G solvation = -3806.569030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.70650 -39.26613 -37.33192 -36.22040 -33.97968 -33.35466 -31.64518 -30.88835 -29.99473 -27.33546 -26.16904 -25.91535 -25.59378 -24.90023 -23.10519 -21.72764 -20.95926 -20.23620 -19.74534 -18.65910 -16.80042 -16.64958 -16.42005 -16.03490 -15.60787 -15.40844 -15.00519 -14.55433 -14.36632 -14.19508 -13.85456 -13.65726 -13.43127 -13.28705 -12.82120 -12.75853 -12.65677 -12.53857 -12.29512 -11.98765 -11.91901 -11.66116 -11.48789 -11.38975 -11.27293 -11.20983 -10.98128 -10.83441 -10.60897 -10.58601 -10.57454 -10.20084 -10.14245 -10.10236 -9.96285 -9.85873 -9.37843 -9.18231 -8.59959 -8.35811 -6.72405 -5.71783 -3.18192 3.23166 3.38631 3.46343 3.49507 3.71162 3.77440 4.30952 4.34408 4.41542 4.51351 4.60786 4.76932 4.82525 4.93197 5.09446 5.25314 5.28742 5.37475 5.38784 5.43894 5.46213 5.48156 5.50903 5.57026 5.63199 5.66901 5.69061 5.73828 5.77683 5.79356 5.84926 5.88515 5.98542 6.01747 6.10859 6.14371 6.19007 6.22592 6.25415 6.52800 6.59149 6.63867 6.86379 7.20098 7.31682 7.32729 7.69245 7.82379 8.13747 8.39853 8.85239 9.24385 9.86827 10.34942 11.32828 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.002851 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.193225 B = 9819.111186 C =10521.063240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.082 0.918 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.249 4.249 8 H 0.067 0.933 9 C 0.001 3.999 10 N -0.910 5.910 11 Si 0.903 3.097 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.290 1.290 15 N -0.708 5.708 16 C 0.515 3.485 17 O -0.541 6.541 18 C -0.136 4.136 19 C 0.110 3.890 20 H 0.065 0.935 21 C -0.149 4.149 22 C -0.104 4.104 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.130 4.130 27 C 0.090 3.910 28 O -0.361 6.361 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.031 0.969 35 H -0.008 1.008 36 H 0.041 0.959 37 H 0.251 0.749 38 H 0.395 0.605 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.052 0.948 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -0.087 -20.365 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.100 0.900 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.023 3.977 7 C -0.379 4.379 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.555 5.555 11 Si 0.733 3.267 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.217 1.217 15 N -0.359 5.359 16 C 0.300 3.700 17 O -0.419 6.419 18 C -0.176 4.176 19 C 0.051 3.949 20 H 0.083 0.917 21 C -0.187 4.187 22 C -0.141 4.141 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.181 4.181 26 C -0.168 4.168 27 C 0.013 3.987 28 O -0.279 6.279 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.230 0.770 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.100 0.900 51 H 0.070 0.930 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.546 0.610 -20.226 22.373 hybrid contribution 1.191 0.296 0.083 1.230 sum -8.355 0.906 -20.142 21.825 Atomic orbital electron populations 1.22118 0.96716 1.01152 1.01677 1.21836 0.92015 0.98795 0.86263 0.90016 1.21061 0.85811 0.97490 0.94198 1.43817 0.99112 1.22753 1.66429 1.20816 0.94025 0.89085 0.93755 1.19219 0.94274 0.89700 1.34675 0.91474 1.25003 0.98809 0.96063 0.99828 1.70062 1.16894 1.16481 1.52113 0.86201 0.81089 0.81847 0.77553 1.20293 1.21763 1.21702 1.46031 1.66666 1.13828 1.09412 1.20312 0.77824 0.87422 0.84402 1.90657 1.50238 1.15978 1.85005 1.21730 1.03734 0.99303 0.92862 1.21700 0.84810 0.96201 0.92155 0.91727 1.22231 1.01638 0.99200 0.95612 1.21514 0.95484 0.98806 0.98345 1.22271 0.96178 0.97854 0.95534 1.22845 0.98929 0.96133 0.98366 1.22870 0.97250 0.97683 1.00266 1.22864 0.97876 0.98790 0.97252 1.22217 1.00783 0.90772 0.84961 1.88001 1.26566 1.59271 1.54085 0.92850 0.93182 0.92170 0.94206 0.92050 0.95113 0.98945 0.94072 0.93892 0.76968 0.87675 0.88660 0.90747 0.91002 0.91726 0.91511 0.90349 0.91033 0.90188 0.91651 0.91415 0.90032 0.93008 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 37.16 0.35 -2.06 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.97 16 3 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 4 C 0.14 2.82 5.29 -4.04 -0.02 2.80 16 5 N -0.60 -14.53 2.78 -181.11 -0.50 -15.03 16 6 C 0.17 3.90 8.51 59.85 0.51 4.41 16 7 C -0.25 -6.82 9.66 -15.06 -0.15 -6.97 16 8 H 0.07 1.85 7.86 -52.48 -0.41 1.43 16 9 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 16 10 N -0.91 -26.28 10.66 55.49 0.59 -25.69 16 11 Si 0.90 22.17 29.57 -169.99 -5.03 17.15 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 N -0.71 -12.08 4.52 -53.81 -0.24 -12.32 16 16 C 0.51 9.02 7.67 -10.98 -0.08 8.94 16 17 O -0.54 -11.44 15.07 -9.09 -0.14 -11.58 16 18 C -0.14 -1.80 5.41 -27.88 -0.15 -1.95 16 19 C 0.11 1.44 2.13 -26.69 -0.06 1.38 16 20 H 0.06 0.97 7.96 -51.92 -0.41 0.56 16 21 C -0.15 -1.50 5.36 -26.51 -0.14 -1.64 16 22 C -0.10 -0.96 5.20 -26.62 -0.14 -1.10 16 23 C -0.12 -1.09 0.86 -154.36 -0.13 -1.22 16 24 C -0.13 -1.06 7.12 -26.10 -0.19 -1.25 16 25 C -0.14 -1.07 7.73 -25.84 -0.20 -1.27 16 26 C -0.13 -1.01 7.23 -26.12 -0.19 -1.20 16 27 C 0.09 1.04 5.93 37.03 0.22 1.26 16 28 O -0.36 -5.18 9.63 -49.88 -0.48 -5.66 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 33 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 34 H 0.03 0.79 7.34 -51.93 -0.38 0.40 16 35 H -0.01 -0.15 5.76 -51.93 -0.30 -0.45 16 36 H 0.04 1.04 7.32 -51.93 -0.38 0.66 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.39 6.13 6.20 -40.82 -0.25 5.87 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 45 H 0.08 0.61 8.02 -51.93 -0.42 0.19 16 46 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 47 H 0.08 0.59 7.64 -51.93 -0.40 0.19 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 50 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 51 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 52 H 0.09 0.96 7.34 -51.93 -0.38 0.58 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -32.11 400.30 -10.02 -42.13 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -9.60 Total: 2.96 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.65 Total: 2.02 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.16 Total: -53.05 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.62 Total: -17.24 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.11 -10.02 -42.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.653 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds