Wall clock time and date at job start Tue Mar 31 2020 13:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 114.00219 * 2 1 4 4 C 1.53005 * 109.47195 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47342 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47261 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99810 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00405 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99876 * 180.02562 * 7 6 5 10 10 H 1.08999 * 115.55340 * 58.29141 * 9 7 6 11 11 C 1.53054 * 117.50776 * 204.05095 * 9 7 6 12 12 C 1.52736 * 59.94439 * 107.46654 * 11 9 7 13 13 C 1.53225 * 117.84543 * 107.73428 * 12 11 9 14 14 C 1.53258 * 108.61725 * 197.02450 * 13 12 11 15 15 N 1.46808 * 109.44772 * 304.41383 * 14 13 12 16 16 C 1.46899 * 111.00293 * 189.20072 * 15 14 13 17 17 C 1.52996 * 109.47241 * 301.55993 * 16 15 14 18 18 C 1.50699 * 109.47358 * 184.78413 * 17 16 15 19 19 H 1.07999 * 119.99786 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00058 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99954 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47231 * 59.99779 * 22 20 18 24 24 H 1.48501 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47024 * 299.99561 * 22 20 18 26 26 C 1.46802 * 111.58431 * 64.81843 * 15 14 13 27 27 C 1.53217 * 117.84942 * 252.26499 * 12 11 9 28 28 H 1.09002 * 109.46951 * 60.00204 * 1 2 3 29 29 H 1.08996 * 109.47436 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47150 * 300.00503 * 1 2 3 31 31 H 1.08998 * 109.47648 * 59.99480 * 3 2 1 32 32 H 1.08999 * 109.47347 * 299.99519 * 3 2 1 33 33 H 1.09007 * 109.46869 * 299.99425 * 4 3 2 34 34 H 1.08993 * 109.47417 * 59.99954 * 4 3 2 35 35 H 1.08999 * 109.46919 * 300.00307 * 5 4 3 36 36 H 1.09002 * 109.46933 * 59.99692 * 5 4 3 37 37 H 0.96997 * 120.00117 * 0.02562 * 6 5 4 38 38 H 1.08996 * 117.50416 * 214.93817 * 11 9 7 39 39 H 1.08997 * 117.50261 * 359.97438 * 11 9 7 40 40 H 1.09002 * 109.60950 * 316.76530 * 13 12 11 41 41 H 1.09002 * 109.61041 * 77.28484 * 13 12 11 42 42 H 1.09006 * 109.47209 * 184.42559 * 14 13 12 43 43 H 1.08997 * 109.48035 * 64.40988 * 14 13 12 44 44 H 1.09001 * 109.46835 * 61.55511 * 16 15 14 45 45 H 1.08997 * 109.47079 * 181.55443 * 16 15 14 46 46 H 1.09008 * 109.46732 * 304.78425 * 17 16 15 47 47 H 1.08998 * 109.47468 * 64.77939 * 17 16 15 48 48 H 0.96998 * 120.00159 * 180.02562 * 21 20 18 49 49 H 1.09010 * 109.47992 * 175.19130 * 26 15 14 50 50 H 1.09003 * 109.47696 * 55.17706 * 26 15 14 51 51 H 1.09001 * 109.61321 * 282.71718 * 27 12 11 52 52 H 1.09000 * 109.60821 * 43.23978 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5822 0.0000 6 7 5.6183 2.4665 0.0012 7 6 6.3822 3.5768 0.0004 8 8 5.8607 4.6717 -0.0009 9 6 7.8845 3.4578 0.0011 10 1 8.3127 2.9045 -0.8348 11 6 8.6869 4.6383 0.5535 12 6 8.5825 3.3424 1.3551 13 6 9.8273 2.4533 1.4435 14 6 9.3985 1.0555 1.9032 15 7 8.6636 1.1615 3.1697 16 6 8.4256 -0.1656 3.7529 17 6 7.6371 -1.0242 2.7621 18 6 7.2914 -2.3430 3.4044 19 1 7.6033 -2.5483 4.4177 20 6 6.5769 -3.2873 2.6982 21 7 6.1967 -3.0371 1.4644 22 14 6.1478 -4.9217 3.4946 23 1 5.3239 -4.6807 4.7064 24 1 5.3815 -5.7547 2.5332 25 1 7.3963 -5.6288 3.8773 26 6 7.4038 1.8966 3.0031 27 6 7.7072 3.3472 2.6126 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8567 0.6438 0.8910 34 1 3.8575 0.6435 -0.8890 35 1 3.8366 3.1226 -0.8904 36 1 3.8359 3.1237 0.8895 37 1 6.0354 1.5908 0.0019 38 1 9.6432 4.8620 0.0808 39 1 8.1281 5.5011 0.9159 40 1 10.3000 2.3872 0.4636 41 1 10.5284 2.8760 2.1631 42 1 10.2819 0.4333 2.0467 43 1 8.7558 0.6054 1.1467 44 1 9.3809 -0.6442 3.9685 45 1 7.8557 -0.0598 4.6760 46 1 6.7204 -0.5055 2.4811 47 1 8.2419 -1.2007 1.8727 48 1 5.6937 -3.7014 0.9677 49 1 6.8474 1.8814 3.9405 50 1 6.8093 1.4261 2.2200 51 1 8.2382 3.8417 3.4261 52 1 6.7750 3.8735 2.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:23 Heat of formation + Delta-G solvation = -74.854695 kcal Electronic energy + Delta-G solvation = -29087.979002 eV Core-core repulsion = 25280.452993 eV Total energy + Delta-G solvation = -3807.526010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.43312 -38.58288 -37.97642 -36.34698 -35.23300 -33.06425 -31.89643 -30.80979 -30.72753 -27.98319 -27.26061 -25.55063 -24.26277 -23.35113 -23.02742 -22.11673 -21.65298 -20.43318 -19.88882 -18.23088 -16.92771 -16.66269 -16.45138 -16.36947 -15.66754 -15.59786 -14.93186 -14.78213 -14.68886 -14.51097 -14.43201 -14.06179 -13.85475 -13.27141 -13.08917 -12.76561 -12.49974 -12.36432 -12.15120 -12.08028 -11.96371 -11.91251 -11.53102 -11.51580 -11.12962 -11.08692 -11.03696 -10.99030 -10.88989 -10.70316 -10.30088 -10.04429 -9.88406 -9.78813 -9.73137 -9.71680 -9.47245 -9.16886 -9.01062 -8.36894 -7.49287 -6.03630 -4.05932 2.64174 3.07935 3.31240 3.36311 3.38390 3.72208 3.83983 4.41965 4.56096 4.60773 4.74551 4.84483 4.89554 4.98498 5.01067 5.04558 5.21119 5.23245 5.27339 5.32404 5.35651 5.41002 5.49517 5.54972 5.57222 5.62845 5.72518 5.74300 5.81357 5.89050 6.02137 6.06446 6.07968 6.14296 6.18612 6.20176 6.29467 6.34711 6.46727 6.47301 6.50314 6.68664 6.89306 7.10748 7.51026 7.53139 7.57788 7.68063 7.84743 7.96998 8.29919 8.40120 8.99962 9.58461 11.07157 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.006565 B = 0.005434 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4263.994058 B = 5151.837541 C = 8857.311455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.069 3.931 4 C -0.136 4.136 5 C 0.127 3.873 6 N -0.722 5.722 7 C 0.551 3.449 8 O -0.549 6.549 9 C -0.189 4.189 10 H 0.125 0.875 11 C -0.142 4.142 12 C -0.088 4.088 13 C -0.078 4.078 14 C 0.058 3.942 15 N -0.542 5.542 16 C 0.057 3.943 17 C -0.005 4.005 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.060 3.940 27 C -0.082 4.082 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.409 0.591 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.261 0.739 49 H 0.069 0.931 50 H 0.041 0.959 51 H 0.075 0.925 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 12.575 -4.319 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.009 4.009 4 C -0.173 4.173 5 C 0.003 3.997 6 N -0.374 5.374 7 C 0.338 3.662 8 O -0.427 6.427 9 C -0.210 4.210 10 H 0.143 0.857 11 C -0.179 4.179 12 C -0.088 4.088 13 C -0.116 4.116 14 C -0.070 4.070 15 N -0.266 5.266 16 C -0.070 4.070 17 C -0.044 4.044 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.068 4.068 27 C -0.120 4.120 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.244 0.756 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.035 0.965 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.060 0.940 51 H 0.094 0.906 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.242 13.374 -4.144 14.180 hybrid contribution -0.953 -1.791 -0.358 2.061 sum -3.195 11.583 -4.502 12.831 Atomic orbital electron populations 1.22732 0.81171 1.02822 0.99708 1.87958 1.19525 1.27609 1.95345 1.22331 0.93507 0.84898 1.00127 1.21699 0.93632 0.96631 1.05371 1.21124 0.79838 0.96617 1.02131 1.45970 1.06621 1.09669 1.75112 1.19610 0.87948 0.83805 0.74859 1.90663 1.74911 1.26848 1.50282 1.22388 0.91302 1.06735 1.00598 0.85677 1.23008 1.00538 0.92192 1.02179 1.21604 0.97971 0.98705 0.90545 1.21295 0.94606 0.94764 1.00937 1.21995 0.98363 0.95254 0.91421 1.62111 1.20233 1.19206 1.25027 1.22333 0.99962 0.86416 0.98290 1.19630 0.95205 0.94667 0.94850 1.21106 1.34939 1.00269 0.99716 0.92787 1.24974 0.95814 0.98448 0.94860 1.69917 1.38298 1.35130 1.09752 0.86699 0.78515 0.83869 0.79162 1.20275 1.21304 1.20280 1.21981 0.91607 0.92537 1.00696 1.21291 0.97953 0.97405 0.95316 0.94278 0.89581 0.94115 0.93120 0.93332 0.89308 0.90148 0.91621 0.91461 0.75579 0.88116 0.87929 0.91656 0.90561 0.91020 0.94025 0.92082 0.92090 0.96615 0.96548 0.92952 0.91275 0.94047 0.90601 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.52 10.70 -35.23 -0.38 -5.89 16 3 C 0.07 0.81 5.94 37.16 0.22 1.03 16 4 C -0.14 -1.76 5.70 -26.73 -0.15 -1.91 16 5 C 0.13 1.59 5.67 -4.04 -0.02 1.56 16 6 N -0.72 -9.78 5.45 -60.30 -0.33 -10.11 16 7 C 0.55 8.04 5.86 -10.99 -0.06 7.98 16 8 O -0.55 -9.56 16.53 5.56 0.09 -9.46 16 9 C -0.19 -2.40 5.88 -91.86 -0.54 -2.94 16 10 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 11 C -0.14 -1.64 9.51 -26.84 -0.26 -1.90 16 12 C -0.09 -1.11 2.02 -154.54 -0.31 -1.42 16 13 C -0.08 -0.97 5.87 -26.48 -0.16 -1.13 16 14 C 0.06 0.91 4.76 -3.74 -0.02 0.89 16 15 N -0.54 -9.26 4.78 -234.45 -1.12 -10.38 16 16 C 0.06 1.14 5.27 -3.83 -0.02 1.12 16 17 C -0.01 -0.13 4.25 -27.89 -0.12 -0.25 16 18 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 22 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.06 0.98 5.00 -3.74 -0.02 0.96 16 27 C -0.08 -1.14 5.52 -26.48 -0.15 -1.29 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.41 5.61 8.30 -40.82 -0.34 5.27 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.28 7.88 -51.93 -0.41 0.87 16 40 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 43 H 0.04 0.73 6.90 -51.93 -0.36 0.37 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.24 8.02 -51.93 -0.42 0.82 16 46 H 0.02 0.40 6.55 -51.92 -0.34 0.06 16 47 H 0.02 0.42 6.86 -51.93 -0.36 0.07 16 48 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.07 1.15 8.00 -51.92 -0.42 0.73 16 50 H 0.04 0.73 6.53 -51.93 -0.34 0.39 16 51 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.06 0.91 6.85 -51.93 -0.36 0.55 16 LS Contribution 410.53 15.07 6.19 6.19 Total: -1.00 -31.28 410.53 -10.36 -41.64 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -9.63 Total: 5.52 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.90 Total: -8.81 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.71 Total: -45.52 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.29 Total: -15.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.28 -10.36 -41.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.215 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds