Wall clock time and date at job start Tue Mar 31 2020 13:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 114.00219 * 2 1 4 4 C 1.53005 * 109.47195 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47342 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47261 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99810 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00405 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99876 * 180.02562 * 7 6 5 10 10 H 1.08999 * 115.55340 * 58.29141 * 9 7 6 11 11 C 1.53054 * 117.50776 * 204.05095 * 9 7 6 12 12 C 1.52736 * 59.94439 * 107.46654 * 11 9 7 13 13 C 1.53225 * 117.84543 * 107.73428 * 12 11 9 14 14 C 1.53258 * 108.61725 * 197.02450 * 13 12 11 15 15 N 1.46808 * 109.44772 * 304.41383 * 14 13 12 16 16 C 1.46899 * 111.00293 * 189.20072 * 15 14 13 17 17 C 1.52996 * 109.47241 * 301.55993 * 16 15 14 18 18 C 1.50699 * 109.47358 * 184.78413 * 17 16 15 19 19 H 1.07999 * 119.99786 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00058 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99954 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47231 * 59.99779 * 22 20 18 24 24 H 1.48501 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47024 * 299.99561 * 22 20 18 26 26 C 1.46802 * 111.58431 * 64.81843 * 15 14 13 27 27 C 1.53217 * 117.84942 * 252.26499 * 12 11 9 28 28 H 1.09002 * 109.46951 * 60.00204 * 1 2 3 29 29 H 1.08996 * 109.47436 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47150 * 300.00503 * 1 2 3 31 31 H 1.08998 * 109.47648 * 59.99480 * 3 2 1 32 32 H 1.08999 * 109.47347 * 299.99519 * 3 2 1 33 33 H 1.09007 * 109.46869 * 299.99425 * 4 3 2 34 34 H 1.08993 * 109.47417 * 59.99954 * 4 3 2 35 35 H 1.08999 * 109.46919 * 300.00307 * 5 4 3 36 36 H 1.09002 * 109.46933 * 59.99692 * 5 4 3 37 37 H 0.96997 * 120.00117 * 0.02562 * 6 5 4 38 38 H 1.08996 * 117.50416 * 214.93817 * 11 9 7 39 39 H 1.08997 * 117.50261 * 359.97438 * 11 9 7 40 40 H 1.09002 * 109.60950 * 316.76530 * 13 12 11 41 41 H 1.09002 * 109.61041 * 77.28484 * 13 12 11 42 42 H 1.09006 * 109.47209 * 184.42559 * 14 13 12 43 43 H 1.08997 * 109.48035 * 64.40988 * 14 13 12 44 44 H 1.09001 * 109.46835 * 61.55511 * 16 15 14 45 45 H 1.08997 * 109.47079 * 181.55443 * 16 15 14 46 46 H 1.09008 * 109.46732 * 304.78425 * 17 16 15 47 47 H 1.08998 * 109.47468 * 64.77939 * 17 16 15 48 48 H 0.96998 * 120.00159 * 180.02562 * 21 20 18 49 49 H 1.09010 * 109.47992 * 175.19130 * 26 15 14 50 50 H 1.09003 * 109.47696 * 55.17706 * 26 15 14 51 51 H 1.09001 * 109.61321 * 282.71718 * 27 12 11 52 52 H 1.09000 * 109.60821 * 43.23978 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5822 0.0000 6 7 5.6183 2.4665 0.0012 7 6 6.3822 3.5768 0.0004 8 8 5.8607 4.6717 -0.0009 9 6 7.8845 3.4578 0.0011 10 1 8.3127 2.9045 -0.8348 11 6 8.6869 4.6383 0.5535 12 6 8.5825 3.3424 1.3551 13 6 9.8273 2.4533 1.4435 14 6 9.3985 1.0555 1.9032 15 7 8.6636 1.1615 3.1697 16 6 8.4256 -0.1656 3.7529 17 6 7.6371 -1.0242 2.7621 18 6 7.2914 -2.3430 3.4044 19 1 7.6033 -2.5483 4.4177 20 6 6.5769 -3.2873 2.6982 21 7 6.1967 -3.0371 1.4644 22 14 6.1478 -4.9217 3.4946 23 1 5.3239 -4.6807 4.7064 24 1 5.3815 -5.7547 2.5332 25 1 7.3963 -5.6288 3.8773 26 6 7.4038 1.8966 3.0031 27 6 7.7072 3.3472 2.6126 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8567 0.6438 0.8910 34 1 3.8575 0.6435 -0.8890 35 1 3.8366 3.1226 -0.8904 36 1 3.8359 3.1237 0.8895 37 1 6.0354 1.5908 0.0019 38 1 9.6432 4.8620 0.0808 39 1 8.1281 5.5011 0.9159 40 1 10.3000 2.3872 0.4636 41 1 10.5284 2.8760 2.1631 42 1 10.2819 0.4333 2.0467 43 1 8.7558 0.6054 1.1467 44 1 9.3809 -0.6442 3.9685 45 1 7.8557 -0.0598 4.6760 46 1 6.7204 -0.5055 2.4811 47 1 8.2419 -1.2007 1.8727 48 1 5.6937 -3.7014 0.9677 49 1 6.8474 1.8814 3.9405 50 1 6.8093 1.4261 2.2200 51 1 8.2382 3.8417 3.4261 52 1 6.7750 3.8735 2.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:22 Heat of formation + Delta-G solvation = -95.507499 kcal Electronic energy + Delta-G solvation = -29088.874575 eV Core-core repulsion = 25280.452993 eV Total energy + Delta-G solvation = -3808.421583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56426 -39.82839 -39.00070 -37.62645 -36.39685 -35.05813 -32.99436 -32.40001 -31.92754 -29.59779 -28.21507 -26.59931 -25.96839 -24.50386 -24.23928 -23.63417 -22.72531 -21.71037 -21.16342 -19.43764 -18.53506 -18.00680 -17.69632 -17.38123 -16.82776 -16.72724 -16.49017 -16.13872 -16.02662 -15.77425 -15.64575 -15.29842 -15.02292 -14.69903 -14.35401 -14.32961 -13.86468 -13.67500 -13.37983 -13.23967 -13.16838 -12.99643 -12.92999 -12.83665 -12.66024 -12.59405 -12.35956 -12.22515 -12.16471 -12.08889 -11.83968 -11.55255 -11.43269 -11.27620 -11.08654 -10.87243 -10.67530 -10.57442 -10.50570 -10.15667 -9.02477 -8.17694 -6.28034 1.39597 1.41039 1.48798 1.49946 2.02982 2.40772 2.74144 2.86997 3.15171 3.17362 3.54632 3.70494 3.83331 3.84994 3.88523 3.97777 4.05068 4.15669 4.26978 4.36933 4.40381 4.41282 4.43578 4.52230 4.54540 4.56532 4.58602 4.64672 4.66667 4.80672 4.86316 4.88559 4.93677 4.97470 4.99865 5.04103 5.05029 5.07100 5.13518 5.16156 5.30289 5.37142 5.39916 5.51032 5.64479 5.78539 6.07391 6.20538 6.33990 6.39736 6.42476 6.87680 7.14539 7.40418 8.91650 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.006565 B = 0.005434 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4263.994058 B = 5151.837541 C = 8857.311455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.068 3.932 4 C -0.125 4.125 5 C 0.132 3.868 6 N -0.721 5.721 7 C 0.549 3.451 8 O -0.579 6.579 9 C -0.199 4.199 10 H 0.142 0.858 11 C -0.121 4.121 12 C -0.094 4.094 13 C -0.066 4.066 14 C 0.056 3.944 15 N -0.533 5.533 16 C 0.070 3.930 17 C 0.009 3.991 18 C -0.543 4.543 19 H 0.057 0.943 20 C 0.009 3.991 21 N -0.922 5.922 22 Si 0.954 3.046 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.062 3.938 27 C -0.072 4.072 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.406 0.594 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.057 0.943 46 H -0.008 1.008 47 H -0.005 1.005 48 H 0.261 0.739 49 H 0.061 0.939 50 H 0.021 0.979 51 H 0.085 0.915 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 13.382 -4.318 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.008 4.008 4 C -0.163 4.163 5 C 0.008 3.992 6 N -0.372 5.372 7 C 0.337 3.663 8 O -0.460 6.460 9 C -0.219 4.219 10 H 0.159 0.841 11 C -0.158 4.158 12 C -0.094 4.094 13 C -0.104 4.104 14 C -0.072 4.072 15 N -0.256 5.256 16 C -0.058 4.058 17 C -0.030 4.030 18 C -0.582 4.582 19 H 0.075 0.925 20 C -0.190 4.190 21 N -0.562 5.562 22 Si 0.779 3.221 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.192 1.192 26 C -0.066 4.066 27 C -0.110 4.110 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.242 0.758 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.036 0.964 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.011 0.989 47 H 0.014 0.986 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.039 0.961 51 H 0.104 0.896 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.404 14.183 -4.134 14.840 hybrid contribution -1.261 -2.058 -0.364 2.441 sum -2.665 12.125 -4.498 13.204 Atomic orbital electron populations 1.22934 0.79230 1.03695 1.01170 1.87899 1.21852 1.28992 1.95650 1.22400 0.92223 0.84505 1.01720 1.21570 0.95048 0.96397 1.03301 1.21116 0.79361 0.96193 1.02499 1.46059 1.07130 1.09494 1.74500 1.19977 0.88917 0.83306 0.74094 1.90643 1.75657 1.27773 1.51888 1.22498 0.90008 1.08237 1.01187 0.84080 1.23083 1.01219 0.90948 1.00572 1.21557 0.97888 1.00190 0.89797 1.21246 0.94542 0.92073 1.02496 1.22079 0.97568 0.97704 0.89889 1.62166 1.20413 1.17038 1.25985 1.22089 0.99208 0.87398 0.97097 1.19452 0.94325 0.94302 0.94902 1.21558 1.34993 1.01599 1.00034 0.92524 1.25812 0.95732 1.02093 0.95373 1.70047 1.38892 1.36225 1.11044 0.85673 0.78573 0.79544 0.78306 1.19570 1.21075 1.19202 1.21963 0.90982 0.93996 0.99670 1.21161 0.98088 0.95183 0.96527 0.92379 0.89130 0.93031 0.92096 0.91018 0.92555 0.90911 0.90484 0.91660 0.75849 0.85167 0.88783 0.89173 0.89278 0.90955 0.96413 0.91684 0.92406 0.98938 0.98637 0.93031 0.92095 0.96055 0.89602 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.75 16 2 O -0.42 -12.29 10.70 -148.98 -1.59 -13.88 16 3 C 0.07 1.62 5.94 71.98 0.43 2.05 16 4 C -0.13 -3.41 5.70 30.60 0.17 -3.24 16 5 C 0.13 3.38 5.67 86.38 0.49 3.87 16 6 N -0.72 -20.12 5.45 -463.07 -2.52 -22.64 16 7 C 0.55 15.90 5.86 87.66 0.51 16.41 16 8 O -0.58 -19.96 16.53 -3.02 -0.05 -20.01 16 9 C -0.20 -4.72 5.88 -11.60 -0.07 -4.79 16 10 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 11 C -0.12 -2.45 9.51 30.52 0.29 -2.16 16 12 C -0.09 -2.19 2.02 -52.20 -0.11 -2.29 16 13 C -0.07 -1.47 5.87 30.76 0.18 -1.29 16 14 C 0.06 1.70 4.76 86.41 0.41 2.12 16 15 N -0.53 -18.11 4.78 -895.67 -4.28 -22.39 16 16 C 0.07 2.85 5.27 86.30 0.45 3.30 16 17 C 0.01 0.43 4.25 29.85 0.13 0.56 16 18 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 19 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 20 C 0.01 0.49 5.46 84.65 0.46 0.95 16 21 N -0.92 -54.63 13.29 21.45 0.28 -54.35 16 22 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.06 2.05 5.00 86.41 0.43 2.49 16 27 C -0.07 -1.94 5.52 30.75 0.17 -1.77 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.41 11.80 8.30 -92.71 -0.77 11.03 16 38 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.09 2.13 7.88 -2.39 -0.02 2.11 16 40 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 2.19 8.09 -2.38 -0.02 2.18 16 43 H 0.02 0.63 6.90 -2.39 -0.02 0.61 16 44 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.06 2.37 8.02 -2.39 -0.02 2.36 16 46 H -0.01 -0.42 6.55 -2.38 -0.02 -0.43 16 47 H 0.00 -0.25 6.86 -2.39 -0.02 -0.27 16 48 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 49 H 0.06 2.07 8.00 -2.38 -0.02 2.05 16 50 H 0.02 0.79 6.53 -2.39 -0.02 0.78 16 51 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.05 1.56 6.85 -2.39 -0.02 1.54 16 Total: -1.00 -68.23 410.53 -0.59 -68.81 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.11 Total: 30.49 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 5.44 Total: -12.05 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -6.52 Total: -99.38 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.64 Total: -33.90 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.23 -0.59 -68.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.697 kcal (2) G-P(sol) polarization free energy of solvation -68.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds