Wall clock time and date at job start Tue Mar 31 2020 14:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46840 * 2 1 4 4 C 1.53001 * 109.47216 * 119.99776 * 2 1 3 5 5 C 1.53002 * 109.47228 * 175.00022 * 4 2 1 6 6 N 1.46898 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99788 * 293.95189 * 6 5 4 8 8 C 1.50701 * 109.46554 * 165.17332 * 7 6 5 9 9 H 1.07997 * 120.00370 * 356.67686 * 8 7 6 10 10 C 1.37883 * 119.99483 * 176.67952 * 8 7 6 11 11 N 1.31513 * 119.99819 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00273 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47242 * 89.99670 * 12 10 8 14 14 H 1.48492 * 109.46986 * 209.99975 * 12 10 8 15 15 H 1.48501 * 109.46968 * 329.99932 * 12 10 8 16 16 C 1.38576 * 111.00055 * 170.00181 * 6 5 4 17 17 N 1.31220 * 126.47491 * 66.89269 * 16 6 5 18 18 N 1.28524 * 109.86111 * 179.97438 * 17 16 6 19 19 C 1.30301 * 110.05640 * 359.97438 * 18 17 16 20 20 C 1.50694 * 126.35028 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.46603 * 89.97692 * 20 19 18 22 22 C 1.52994 * 109.47210 * 60.00484 * 21 20 19 23 23 C 1.53010 * 109.46796 * 180.02562 * 21 20 19 24 24 O 1.42898 * 109.47525 * 299.99776 * 21 20 19 25 25 N 1.36450 * 126.47248 * 246.58199 * 16 6 5 26 26 C 1.46499 * 127.13647 * 0.03228 * 25 16 6 27 27 H 1.08998 * 109.46810 * 299.99778 * 1 2 3 28 28 H 1.09000 * 109.46955 * 59.99719 * 1 2 3 29 29 H 1.08997 * 109.46797 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47235 * 240.00360 * 2 1 3 31 31 H 1.08998 * 109.47238 * 60.00483 * 3 2 1 32 32 H 1.09004 * 109.47224 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47576 * 299.99901 * 3 2 1 34 34 H 1.09001 * 109.47190 * 295.00363 * 4 2 1 35 35 H 1.09002 * 109.46894 * 54.99938 * 4 2 1 36 36 H 1.09002 * 109.47115 * 300.00779 * 5 4 2 37 37 H 1.09002 * 109.46534 * 59.99931 * 5 4 2 38 38 H 1.08989 * 109.47384 * 285.17735 * 7 6 5 39 39 H 1.09005 * 109.47103 * 45.18169 * 7 6 5 40 40 H 0.97003 * 120.00001 * 179.97438 * 11 10 8 41 41 H 1.08996 * 109.47381 * 209.97718 * 20 19 18 42 42 H 1.09003 * 109.47122 * 329.98285 * 20 19 18 43 43 H 1.08999 * 109.47790 * 59.99445 * 22 21 20 44 44 H 1.08999 * 109.47032 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.47047 * 299.99223 * 22 21 20 46 46 H 1.08994 * 109.47287 * 59.99859 * 23 21 20 47 47 H 1.08999 * 109.46950 * 180.02562 * 23 21 20 48 48 H 1.09008 * 109.46809 * 299.99808 * 23 21 20 49 49 H 0.96705 * 113.99674 * 300.00682 * 24 21 20 50 50 H 1.08999 * 109.47126 * 84.48202 * 26 25 16 51 51 H 1.09004 * 109.47203 * 204.47851 * 26 25 16 52 52 H 1.08998 * 109.47327 * 324.47616 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 7 4.0545 -1.5240 2.3871 7 6 3.8101 -0.7235 3.5944 8 6 3.9804 -1.5908 4.8150 9 1 4.1910 -2.6442 4.7039 10 6 3.8673 -1.0393 6.0737 11 7 4.0165 -1.7960 7.1389 12 14 3.5023 0.7826 6.2659 13 1 2.0327 0.9907 6.3138 14 1 4.1139 1.2799 7.5243 15 1 4.0700 1.5256 5.1122 16 6 5.3983 -1.8397 2.2644 17 7 6.3977 -0.9909 2.2157 18 7 7.5074 -1.6290 2.1000 19 6 7.2837 -2.9123 2.0689 20 6 8.3219 -3.9971 1.9423 21 6 8.7909 -4.4191 3.3363 22 6 7.5987 -4.9453 4.1379 23 6 9.8456 -5.5202 3.2079 24 8 9.3579 -3.2933 4.0093 25 7 5.9325 -3.0923 2.1772 26 6 5.2084 -4.3657 2.1936 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.7517 -0.1583 2.1370 35 1 1.6054 -1.7198 1.2952 36 1 3.8533 -1.3939 0.3002 37 1 3.9994 0.1676 1.1420 38 1 4.5207 0.1020 3.6331 39 1 2.7946 -0.3280 3.5686 40 1 3.9373 -1.4079 8.0244 41 1 7.8895 -4.8559 1.4290 42 1 9.1714 -3.6223 1.3713 43 1 7.1662 -5.8040 3.6246 44 1 7.9329 -5.2463 5.1307 45 1 6.8478 -4.1606 4.2294 46 1 10.6948 -5.1450 2.6369 47 1 10.1794 -5.8211 4.2009 48 1 9.4134 -6.3791 2.6943 49 1 10.1202 -2.9073 3.5564 50 1 4.8589 -4.5979 1.1876 51 1 5.8734 -5.1574 2.5390 52 1 4.3543 -4.2894 2.8665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647691663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:08 Heat of formation + Delta-G solvation = 22.067746 kcal Electronic energy + Delta-G solvation = -29737.427841 eV Core-core repulsion = 25966.397454 eV Total energy + Delta-G solvation = -3771.030386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.34740 -38.34910 -37.70370 -35.51655 -34.47604 -32.73826 -32.44989 -30.37213 -29.12903 -27.93006 -27.37580 -27.08910 -26.61854 -25.97090 -22.72914 -22.37171 -21.13114 -19.92170 -19.85444 -19.36239 -16.99737 -16.87493 -16.32690 -15.91580 -15.45466 -15.23026 -14.86088 -14.83252 -14.23376 -14.09579 -13.84989 -13.58684 -13.38251 -13.06078 -12.87487 -12.72076 -12.54623 -12.37708 -12.31545 -12.14811 -12.10409 -11.82003 -11.74045 -11.54075 -11.47564 -11.16237 -10.93404 -10.77842 -10.73733 -10.68127 -10.58079 -10.44404 -10.16446 -10.01746 -9.96981 -9.80565 -9.47643 -9.37186 -8.56873 -8.26099 -7.84827 -6.06591 -4.04183 2.34936 2.88103 3.29553 3.38544 3.43575 3.51150 4.29030 4.39171 4.43672 4.54809 4.75690 4.89852 4.97806 5.01213 5.05373 5.10661 5.11317 5.24946 5.26818 5.40571 5.45045 5.50648 5.56868 5.65858 5.71305 5.76313 5.77200 5.81219 5.84163 5.88391 5.90082 5.96394 6.03123 6.04849 6.11792 6.16381 6.20017 6.29842 6.34161 6.46257 6.51852 6.59123 6.62920 6.75265 7.02382 7.22931 7.45247 7.69819 7.88081 8.09814 8.54731 8.95854 9.42699 9.54475 11.06398 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.004734 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.344803 B = 5913.647246 C = 7637.678014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.112 4.112 5 C 0.068 3.932 6 N -0.462 5.462 7 C 0.168 3.832 8 C -0.510 4.510 9 H 0.074 0.926 10 C 0.075 3.925 11 N -0.896 5.896 12 Si 0.869 3.131 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.263 1.263 16 C 0.394 3.606 17 N -0.322 5.322 18 N -0.282 5.282 19 C 0.169 3.831 20 C -0.053 4.053 21 C 0.132 3.868 22 C -0.149 4.149 23 C -0.176 4.176 24 O -0.542 6.542 25 N -0.464 5.464 26 C 0.076 3.924 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.013 0.987 39 H 0.039 0.961 40 H 0.264 0.736 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.373 0.627 50 H 0.069 0.931 51 H 0.084 0.916 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 -6.595 -14.721 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.150 4.150 5 C -0.059 4.059 6 N -0.188 5.188 7 C 0.043 3.957 8 C -0.548 4.548 9 H 0.092 0.908 10 C -0.128 4.128 11 N -0.535 5.535 12 Si 0.696 3.304 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.187 1.187 16 C 0.038 3.962 17 N -0.166 5.166 18 N -0.123 5.123 19 C -0.098 4.098 20 C -0.093 4.093 21 C 0.090 3.910 22 C -0.206 4.206 23 C -0.233 4.233 24 O -0.347 6.347 25 N -0.157 5.157 26 C -0.068 4.068 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.220 0.780 50 H 0.088 0.912 51 H 0.103 0.897 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.697 -5.853 -14.049 15.457 hybrid contribution -0.151 0.379 -0.034 0.409 sum 2.546 -5.474 -14.083 15.322 Atomic orbital electron populations 1.21818 0.95299 1.01624 1.01492 1.21077 0.95580 0.96320 0.98337 1.21921 1.01475 0.96042 1.01422 1.21700 0.94210 1.01285 0.97771 1.22110 0.95500 0.97195 0.91137 1.58820 1.07331 1.47726 1.04951 1.20401 0.96605 0.92652 0.86018 1.20846 1.49045 0.96728 0.88227 0.90811 1.24801 0.94660 0.97603 0.95703 1.69873 1.49988 1.35682 0.97952 0.86932 0.78743 0.86399 0.78327 1.20046 1.21027 1.18728 1.22190 0.92262 0.81472 1.00257 1.74534 0.94771 1.26003 1.21244 1.73841 1.19499 1.01321 1.17591 1.24081 0.82531 0.95862 1.07360 1.20709 0.95577 0.94165 0.98819 1.21157 0.93443 0.86195 0.90205 1.21972 0.97195 1.01012 1.00384 1.22490 0.98953 0.98986 1.02891 1.86718 1.50159 1.46474 1.51392 1.46040 1.06951 1.07929 1.54761 1.22110 0.98522 0.82739 1.03400 0.92586 0.93093 0.92722 0.91571 0.92563 0.92332 0.93170 0.90931 0.91055 0.92117 0.93610 0.96925 0.94328 0.92631 0.89663 0.88593 0.91497 0.91516 0.90745 0.92180 0.91416 0.91639 0.77976 0.91220 0.89703 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 2 C -0.09 -1.13 2.92 -90.62 -0.26 -1.40 16 3 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 4 C -0.11 -1.66 4.64 -26.73 -0.12 -1.79 16 5 C 0.07 1.18 4.65 -3.82 -0.02 1.16 16 6 N -0.46 -9.74 4.49 -175.88 -0.79 -10.53 16 7 C 0.17 4.14 3.66 -4.97 -0.02 4.12 16 8 C -0.51 -14.57 9.36 -34.44 -0.32 -14.90 16 9 H 0.07 2.27 8.05 -52.49 -0.42 1.85 16 10 C 0.07 2.20 5.47 -17.82 -0.10 2.10 16 11 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 12 Si 0.87 22.10 27.54 -169.99 -4.68 17.42 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.26 -6.61 6.45 56.52 0.36 -6.24 16 16 C 0.39 8.57 5.89 -318.88 -1.88 6.70 16 17 N -0.32 -7.63 11.89 30.31 0.36 -7.27 16 18 N -0.28 -6.07 12.18 32.99 0.40 -5.67 16 19 C 0.17 3.00 6.00 -154.01 -0.92 2.08 16 20 C -0.05 -0.64 4.67 -27.88 -0.13 -0.77 16 21 C 0.13 1.68 1.08 -90.62 -0.10 1.58 16 22 C -0.15 -2.16 7.31 37.15 0.27 -1.89 16 23 C -0.18 -1.58 8.82 37.16 0.33 -1.25 16 24 O -0.54 -8.53 12.60 -35.23 -0.44 -8.98 16 25 N -0.46 -8.51 2.73 -121.46 -0.33 -8.84 16 26 C 0.08 1.06 10.17 59.85 0.61 1.67 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.76 6.57 -51.93 -0.34 0.41 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.19 6.30 -51.93 -0.33 0.87 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 37 H 0.05 0.83 6.55 -51.93 -0.34 0.49 16 38 H 0.01 0.35 6.60 -51.94 -0.34 0.00 16 39 H 0.04 0.91 5.56 -51.93 -0.29 0.62 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.08 0.81 7.78 -51.93 -0.40 0.41 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.74 6.69 -51.93 -0.35 0.39 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 1.43 6.12 -51.93 -0.32 1.11 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 49 H 0.37 4.41 9.04 45.56 0.41 4.82 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.08 0.97 4.69 -51.93 -0.24 0.73 16 52 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 403.09 15.07 6.07 6.07 Total: -1.00 -35.94 403.09 -9.10 -45.03 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.47 Total: 4.99 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.99 Total: -5.28 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.41 Total: -59.27 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.44 Total: -8.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.68 Total: 17.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.94 -9.10 -45.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647691663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.102 kcal (2) G-P(sol) polarization free energy of solvation -35.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds