Wall clock time and date at job start Tue Mar 31 2020 14:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 C 1.53004 * 109.47453 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47158 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46914 * 54.99940 * 5 4 3 7 7 C 1.52997 * 109.46964 * 294.99908 * 5 4 3 8 8 C 1.50701 * 109.46666 * 174.99892 * 5 4 3 9 9 O 1.21280 * 120.00414 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99874 * 180.02562 * 8 5 4 11 11 C 1.46502 * 120.00056 * 180.02562 * 10 8 5 12 12 C 1.53000 * 109.46847 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.70172 * 62.32028 * 12 11 10 14 14 C 1.53621 * 109.66336 * 182.91175 * 12 11 10 15 15 C 1.53039 * 109.24379 * 174.54765 * 14 12 11 16 16 C 1.53035 * 109.53963 * 298.51244 * 15 14 12 17 17 C 1.53008 * 109.49703 * 301.41168 * 16 15 14 18 18 C 1.52995 * 109.50147 * 181.31775 * 16 15 14 19 19 C 1.53191 * 109.31633 * 61.36151 * 16 15 14 20 20 N 1.46930 * 109.58586 * 301.96398 * 12 11 10 21 21 C 1.36929 * 120.63085 * 6.62618 * 20 12 11 22 22 H 1.07998 * 120.00444 * 318.75749 * 21 20 12 23 23 C 1.38813 * 119.99627 * 138.75847 * 21 20 12 24 24 N 1.31631 * 119.99708 * 171.91215 * 23 21 20 25 25 Si 1.86791 * 120.00211 * 351.64220 * 23 21 20 26 26 H 1.48499 * 109.47308 * 186.22287 * 25 23 21 27 27 H 1.48496 * 109.47185 * 306.22336 * 25 23 21 28 28 H 1.48500 * 109.47348 * 66.22372 * 25 23 21 29 29 H 1.09010 * 109.46572 * 299.99900 * 1 2 3 30 30 H 1.08994 * 109.47319 * 59.99404 * 1 2 3 31 31 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 32 32 H 1.09012 * 109.46511 * 240.00640 * 2 1 3 33 33 H 1.08994 * 109.47319 * 120.00596 * 2 1 3 34 34 H 1.09000 * 109.47214 * 60.00701 * 3 2 1 35 35 H 1.09003 * 109.47584 * 300.00495 * 3 2 1 36 36 H 1.09000 * 109.46745 * 59.99915 * 4 3 2 37 37 H 1.09003 * 109.46722 * 300.00524 * 4 3 2 38 38 H 1.09002 * 109.46758 * 180.02562 * 7 5 4 39 39 H 1.08999 * 109.47331 * 299.99777 * 7 5 4 40 40 H 1.08999 * 109.47353 * 60.00459 * 7 5 4 41 41 H 0.97008 * 119.99481 * 359.97438 * 10 8 5 42 42 H 1.09002 * 109.46933 * 60.00046 * 11 10 8 43 43 H 1.08996 * 109.47070 * 299.99818 * 11 10 8 44 44 H 1.09005 * 109.63251 * 54.55669 * 14 12 11 45 45 H 1.09004 * 109.45905 * 294.43722 * 14 12 11 46 46 H 1.08999 * 109.45977 * 178.48826 * 15 14 12 47 47 H 1.09002 * 109.45901 * 58.53457 * 15 14 12 48 48 H 1.08998 * 109.47260 * 179.83856 * 17 16 15 49 49 H 1.08997 * 109.46975 * 299.83904 * 17 16 15 50 50 H 1.08997 * 109.46793 * 59.83998 * 17 16 15 51 51 H 1.09004 * 109.46645 * 300.16136 * 18 16 15 52 52 H 1.08998 * 109.47423 * 60.15745 * 18 16 15 53 53 H 1.08995 * 109.47887 * 180.16378 * 18 16 15 54 54 H 1.08999 * 109.59031 * 185.57940 * 19 16 15 55 55 H 1.09004 * 109.70157 * 65.22146 * 19 16 15 56 56 H 0.96996 * 119.99842 * 359.72936 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6458 3.4235 0.8423 7 6 3.6748 3.5697 -1.3068 8 6 5.5820 2.8866 0.1232 9 8 6.1851 1.8374 0.2032 10 7 6.2551 4.0541 0.1456 11 6 7.7152 4.0557 0.2649 12 6 8.2252 5.4982 0.2656 13 1 7.8260 6.0286 1.1301 14 6 9.7605 5.5037 0.3171 15 6 10.2647 6.9421 0.1804 16 6 9.8265 7.5118 -1.1707 17 6 10.3815 6.6382 -2.2975 18 6 10.3588 8.9384 -1.3203 19 6 8.2963 7.5270 -1.2419 20 7 7.7966 6.1728 -0.9673 21 6 6.9434 5.5534 -1.8410 22 1 7.0677 4.5043 -2.0650 23 6 5.9186 6.2742 -2.4388 24 7 5.1992 5.7256 -3.3949 25 14 5.5558 8.0196 -1.8813 26 1 4.3316 8.5124 -2.5623 27 1 5.3451 8.0361 -0.4114 28 1 6.7021 8.8981 -2.2269 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8902 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9330 0.9288 -0.8909 37 1 3.9337 0.9284 0.8891 38 1 4.0385 4.5973 -1.3065 39 1 4.1091 3.0312 -2.1491 40 1 2.5884 3.5686 -1.3959 41 1 5.7726 4.8933 0.0821 42 1 8.1492 3.5177 -0.5780 43 1 8.0043 3.5672 1.1954 44 1 10.1565 4.9002 -0.4997 45 1 10.0934 5.0904 1.2693 46 1 11.3528 6.9531 0.2434 47 1 9.8486 7.5506 0.9833 48 1 10.0667 7.0427 -3.2595 49 1 11.4702 6.6277 -2.2465 50 1 10.0028 5.6218 -2.1893 51 1 9.9640 9.5596 -0.5163 52 1 11.4475 8.9272 -1.2696 53 1 10.0440 9.3448 -2.2814 54 1 7.9798 7.8383 -2.2374 55 1 7.9007 8.2200 -0.4993 56 1 5.3876 4.8193 -3.6844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099049708.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:16 Heat of formation + Delta-G solvation = -69.552818 kcal Electronic energy + Delta-G solvation = -30303.083948 eV Core-core repulsion = 26631.620939 eV Total energy + Delta-G solvation = -3671.463009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 324.252 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.08896 -40.16289 -37.37656 -36.61984 -34.91646 -34.43883 -33.48530 -32.40079 -29.75690 -28.70309 -28.10405 -26.97607 -26.16944 -25.00822 -23.96913 -22.94661 -21.73798 -21.53769 -20.47029 -20.05875 -18.83186 -17.74313 -17.03105 -16.90071 -16.57576 -16.40440 -15.79309 -15.75533 -15.12618 -15.08615 -14.94183 -14.77786 -14.52390 -14.37176 -14.10129 -14.09172 -13.84769 -13.53613 -13.47873 -13.15148 -13.04193 -12.81516 -12.79796 -12.56401 -12.42447 -12.31629 -12.21729 -12.08228 -11.96336 -11.87501 -11.82632 -11.71105 -11.52194 -11.33485 -11.32769 -11.27086 -10.99482 -10.86746 -10.56364 -10.34952 -9.79346 -8.77784 -8.16658 -5.46283 1.54351 1.58631 1.76197 1.79596 2.47723 2.65154 3.28880 3.40572 3.79219 3.80686 3.89841 3.95496 3.97136 4.06685 4.21419 4.24591 4.28788 4.31592 4.35219 4.43306 4.51902 4.56514 4.61471 4.71817 4.75834 4.79284 4.82694 4.85466 4.87431 4.94342 4.97079 5.00303 5.01138 5.03583 5.05950 5.09088 5.09903 5.14731 5.17387 5.21249 5.27011 5.35969 5.40316 5.44090 5.46672 5.50151 5.54800 5.55182 5.69504 5.72904 6.11400 6.48877 6.77402 7.11078 7.40547 7.67500 8.29572 9.05501 Molecular weight = 324.25amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.003657 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.286130 B = 7654.790497 C = 8698.678567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.088 4.088 5 C -0.101 4.101 6 H 0.114 0.886 7 C -0.123 4.123 8 C 0.504 3.496 9 O -0.603 6.603 10 N -0.688 5.688 11 C 0.143 3.857 12 C 0.161 3.839 13 H 0.049 0.951 14 C -0.126 4.126 15 C -0.091 4.091 16 C -0.085 4.085 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.133 3.867 20 N -0.612 5.612 21 C -0.301 4.301 22 H 0.023 0.977 23 C -0.042 4.042 24 N -0.943 5.943 25 Si 1.083 2.917 26 H -0.320 1.320 27 H -0.271 1.271 28 H -0.263 1.263 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.025 0.975 40 H 0.079 0.921 41 H 0.410 0.590 42 H 0.026 0.974 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.030 0.970 49 H 0.060 0.940 50 H 0.038 0.962 51 H 0.061 0.939 52 H 0.069 0.931 53 H 0.045 0.955 54 H 0.050 0.950 55 H 0.030 0.970 56 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 0.728 10.259 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.127 4.127 5 C -0.122 4.122 6 H 0.131 0.869 7 C -0.180 4.180 8 C 0.292 3.708 9 O -0.486 6.486 10 N -0.337 5.337 11 C 0.019 3.981 12 C 0.055 3.945 13 H 0.066 0.934 14 C -0.165 4.165 15 C -0.128 4.128 16 C -0.087 4.087 17 C -0.177 4.177 18 C -0.191 4.191 19 C 0.008 3.992 20 N -0.338 5.338 21 C -0.431 4.431 22 H 0.040 0.960 23 C -0.239 4.239 24 N -0.584 5.584 25 Si 0.911 3.089 26 H -0.249 1.249 27 H -0.197 1.197 28 H -0.189 1.189 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.247 0.753 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.049 0.951 49 H 0.079 0.921 50 H 0.057 0.943 51 H 0.080 0.920 52 H 0.088 0.912 53 H 0.064 0.936 54 H 0.068 0.932 55 H 0.048 0.952 56 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.096 1.300 10.065 10.149 hybrid contribution 0.872 -1.341 -0.702 1.747 sum 0.968 -0.041 9.363 9.413 Atomic orbital electron populations 1.21754 0.94758 1.02044 1.02090 1.21520 0.96689 0.96237 1.01800 1.21655 0.93183 0.97636 1.02755 1.21297 0.96333 0.93411 1.01614 1.21327 0.90266 0.99699 1.00933 0.86858 1.21620 1.01880 1.00258 0.94286 1.21174 0.91266 0.83223 0.75155 1.90574 1.71604 1.32863 1.53586 1.46022 1.07644 1.08824 1.71212 1.21133 0.80582 0.97242 0.99151 1.21014 0.94042 0.90288 0.89120 0.93379 1.22026 0.94918 0.97978 1.01600 1.21402 1.00585 0.95005 0.95829 1.21029 0.95745 0.95956 0.95937 1.21635 0.99584 0.99417 0.97035 1.21775 1.01293 0.94611 1.01471 1.21709 0.92886 0.86290 0.98304 1.44440 1.53922 1.15063 1.20330 1.19693 1.07281 0.94669 1.21432 0.95955 1.27068 0.92870 1.07173 0.96767 1.71013 1.42768 1.15412 1.29216 0.83676 0.74962 0.74077 0.76187 1.24878 1.19680 1.18903 0.92110 0.92836 0.92097 0.92848 0.91869 0.90661 0.91766 0.93887 0.92046 0.92570 0.95524 0.90187 0.75287 0.95530 0.91417 0.93099 0.90286 0.90725 0.91502 0.95066 0.92105 0.94293 0.91988 0.91233 0.93601 0.93159 0.95231 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.91 71.98 0.71 -1.87 16 2 C -0.12 -2.62 5.93 30.59 0.18 -2.44 16 3 C -0.11 -2.71 4.97 30.59 0.15 -2.56 16 4 C -0.09 -2.69 4.03 30.60 0.12 -2.57 16 5 C -0.10 -3.38 2.72 -11.54 -0.03 -3.41 16 6 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 7 C -0.12 -4.56 8.84 71.98 0.64 -3.92 16 8 C 0.50 20.56 7.15 87.66 0.63 21.18 16 9 O -0.60 -28.17 15.92 -3.03 -0.05 -28.21 16 10 N -0.69 -27.50 3.82 -463.06 -1.77 -29.27 16 11 C 0.14 5.51 4.48 86.38 0.39 5.90 16 12 C 0.16 5.63 3.06 45.12 0.14 5.77 16 13 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 14 C -0.13 -3.65 5.05 30.82 0.16 -3.50 16 15 C -0.09 -2.33 4.71 30.62 0.14 -2.19 16 16 C -0.09 -2.56 0.77 -52.10 -0.04 -2.60 16 17 C -0.12 -3.89 7.99 71.98 0.58 -3.32 16 18 C -0.13 -3.27 8.48 71.98 0.61 -2.66 16 19 C 0.13 4.98 2.67 86.36 0.23 5.21 16 20 N -0.61 -25.10 2.03 -674.41 -1.37 -26.47 16 21 C -0.30 -14.81 6.69 84.04 0.56 -14.25 16 22 H 0.02 1.32 6.63 -2.91 -0.02 1.30 16 23 C -0.04 -2.15 4.81 84.86 0.41 -1.74 16 24 N -0.94 -53.69 13.31 21.65 0.29 -53.41 16 25 Si 1.08 47.80 25.26 68.60 1.73 49.53 16 26 H -0.32 -15.14 7.11 99.48 0.71 -14.43 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.26 -10.68 5.53 99.48 0.55 -10.13 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.56 6.57 -2.39 -0.02 1.54 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.90 7.95 -2.39 -0.02 1.88 16 38 H 0.06 2.39 6.59 -2.39 -0.02 2.37 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 2.53 6.57 -2.39 -0.02 2.51 16 41 H 0.41 16.67 6.61 -92.70 -0.61 16.05 16 42 H 0.03 1.19 7.54 -2.39 -0.02 1.18 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.05 1.65 6.33 -2.38 -0.02 1.64 16 45 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.04 1.48 5.97 -2.39 -0.01 1.46 16 51 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.05 2.15 5.05 -2.39 -0.01 2.13 16 55 H 0.03 1.07 7.10 -2.38 -0.02 1.05 16 56 H 0.24 14.58 8.73 -92.71 -0.81 13.77 16 Total: -1.00 -61.17 408.69 4.42 -56.75 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: 0.01 Total: 40.04 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.57 Total: -8.96 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -2.85 Total: -109.14 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.21 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.73 Total: 49.53 kcal Total: -61.17 4.42 -56.75 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099049708.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.803 kcal (2) G-P(sol) polarization free energy of solvation -61.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds