Wall clock time and date at job start Tue Mar 31 2020 14:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86798 * 120.00324 * 2 1 4 4 H 1.48500 * 109.46927 * 269.99848 * 3 2 1 5 5 H 1.48501 * 109.47004 * 29.99451 * 3 2 1 6 6 H 1.48491 * 109.47556 * 149.99804 * 3 2 1 7 7 C 1.38637 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99986 * 180.02562 * 7 2 1 9 9 O 1.34801 * 120.00005 * 359.97438 * 7 2 1 10 10 C 1.35776 * 117.00456 * 174.52154 * 9 7 2 11 11 C 1.38743 * 120.08534 * 354.20182 * 10 9 7 12 12 C 1.38336 * 119.98011 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.92554 * 180.02562 * 12 11 10 14 14 C 1.38557 * 120.15788 * 359.97438 * 12 11 10 15 15 C 1.38189 * 120.17335 * 0.02562 * 14 12 11 16 16 C 1.38713 * 120.02051 * 0.26021 * 15 14 12 17 17 N 1.40036 * 120.07896 * 179.69934 * 16 15 14 18 18 C 1.34782 * 120.00081 * 34.08044 * 17 16 15 19 19 O 1.21651 * 119.99819 * 5.60969 * 18 17 16 20 20 C 1.47195 * 120.00189 * 185.61436 * 18 17 16 21 21 C 1.47083 * 127.20402 * 359.70648 * 20 18 17 22 22 C 1.34121 * 105.97545 * 179.83073 * 21 20 18 23 23 O 1.34294 * 109.17698 * 0.43573 * 22 21 20 24 24 C 1.33694 * 110.91559 * 359.71108 * 23 22 21 25 25 Cl 1.73598 * 125.82751 * 180.02562 * 24 23 22 26 26 H 0.97006 * 120.00456 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.00796 * 359.97438 * 11 10 9 28 28 H 1.07999 * 119.90986 * 180.02562 * 14 12 11 29 29 H 1.08005 * 119.98510 * 179.97438 * 15 14 12 30 30 H 0.96999 * 120.00198 * 214.08415 * 17 16 15 31 31 H 1.08000 * 127.01476 * 359.96619 * 21 20 18 32 32 H 1.07997 * 125.41279 * 180.10449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3680 0.0016 10 6 2.0694 -3.5041 -0.1134 11 6 3.4351 -3.4287 -0.3457 12 6 4.1816 -4.5876 -0.4620 13 9 5.5115 -4.5129 -0.6876 14 6 3.5686 -5.8249 -0.3465 15 6 2.2088 -5.9075 -0.1152 16 6 1.4523 -4.7502 -0.0033 17 7 0.0731 -4.8325 0.2248 18 6 -0.4265 -5.8301 0.9810 19 8 0.3264 -6.5986 1.5488 20 6 -1.8832 -5.9897 1.1198 21 6 -2.9312 -5.1547 0.5133 22 6 -4.0988 -5.6787 0.9143 23 8 -3.8589 -6.7362 1.7066 24 6 -2.5450 -6.9412 1.8440 25 17 -1.8058 -8.2014 2.7816 26 1 -0.4851 0.8401 -0.0004 27 1 3.9154 -2.4655 -0.4356 28 1 4.1553 -6.7271 -0.4376 29 1 1.7341 -6.8735 -0.0262 30 1 -0.5227 -4.1716 -0.1614 31 1 -2.7894 -4.2962 -0.1264 32 1 -5.0766 -5.3059 0.6473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764856460.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:40 Heat of formation + Delta-G solvation = -58.492963 kcal Electronic energy + Delta-G solvation = -24149.504609 eV Core-core repulsion = 20018.885916 eV Total energy + Delta-G solvation = -4130.618692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.035 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.27844 -42.73099 -40.00291 -38.50744 -37.09019 -36.34493 -34.14992 -33.05121 -32.44264 -29.80852 -29.43399 -28.36606 -25.56000 -24.07654 -22.37188 -21.91272 -21.11934 -19.98142 -18.66626 -18.37670 -17.66171 -16.60755 -16.59321 -16.44273 -15.47978 -15.28940 -15.14043 -14.92498 -14.39502 -14.23855 -14.04390 -13.65474 -13.52888 -13.29606 -13.06302 -13.04509 -12.38659 -12.21947 -12.16367 -11.67228 -11.42104 -11.32814 -11.01620 -10.75312 -10.56034 -10.01539 -9.88211 -9.80485 -9.46903 -8.99342 -8.80152 -7.92655 -7.14955 -6.63966 -4.21230 0.97220 1.03653 1.74090 1.99376 2.08732 3.04716 3.06238 3.10724 3.22259 3.41991 3.49732 3.82580 4.30899 4.52435 4.68460 4.82899 4.92478 5.07778 5.11791 5.37900 5.50527 5.57419 5.72058 5.98224 6.02943 6.18388 6.48301 6.59081 6.73440 6.87861 6.89278 7.00351 7.15287 7.59285 7.79104 7.85664 8.47161 8.82207 9.42686 10.53090 Molecular weight = 325.03amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.004230 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.816249 B = 6617.886030 C = 8740.913246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.167 6.167 10 C 0.160 3.840 11 C -0.258 4.258 12 C 0.132 3.868 13 F -0.151 7.151 14 C -0.228 4.228 15 C -0.047 4.047 16 C 0.061 3.939 17 N -0.639 5.639 18 C 0.580 3.420 19 O -0.522 6.522 20 C -0.199 4.199 21 C -0.175 4.175 22 C -0.022 4.022 23 O -0.171 6.171 24 C 0.094 3.906 25 Cl 0.056 6.944 26 H 0.272 0.728 27 H 0.143 0.857 28 H 0.124 0.876 29 H 0.136 0.864 30 H 0.415 0.585 31 H 0.171 0.829 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 -9.700 0.132 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.112 0.888 9 O -0.070 6.070 10 C 0.104 3.896 11 C -0.279 4.279 12 C 0.112 3.888 13 F -0.130 7.130 14 C -0.248 4.248 15 C -0.067 4.067 16 C -0.033 4.033 17 N -0.283 5.283 18 C 0.368 3.632 19 O -0.400 6.400 20 C -0.205 4.205 21 C -0.195 4.195 22 C -0.088 4.088 23 O -0.068 6.068 24 C 0.015 3.985 25 Cl 0.086 6.914 26 H 0.082 0.918 27 H 0.161 0.839 28 H 0.142 0.858 29 H 0.154 0.846 30 H 0.252 0.748 31 H 0.188 0.812 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.047 -10.294 0.768 12.499 hybrid contribution 0.521 1.309 -0.211 1.424 sum -6.526 -8.986 0.557 11.119 Atomic orbital electron populations 1.70000 1.05949 1.28042 1.45252 1.25280 0.95916 0.98859 0.96086 0.85679 0.79080 0.79714 0.78880 1.19706 1.20140 1.19021 1.21349 0.91999 0.80372 1.53023 0.88815 1.83929 1.33940 1.11329 1.77782 1.18814 0.89549 0.86969 0.94314 1.20866 0.94103 0.98412 1.14497 1.17456 0.76671 0.94250 1.00432 1.91417 1.31948 1.97355 1.92231 1.20450 0.95170 0.95694 1.13528 1.20472 0.92638 0.96945 0.96645 1.16785 0.83133 0.91170 1.12255 1.42874 1.06450 1.29089 1.49857 1.17041 0.85777 0.81600 0.78780 1.90818 1.59033 1.44076 1.46066 1.21072 0.94761 0.99168 1.05500 1.23020 0.90487 1.02039 1.03937 1.23964 1.00771 0.88105 0.95949 1.83720 1.23503 1.43640 1.55969 1.22591 0.81768 0.95127 0.99043 1.98478 1.76234 1.47379 1.69357 0.91795 0.83898 0.85847 0.84607 0.74831 0.81154 0.76519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.97 13.67 55.48 0.76 -22.21 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.43 29.55 -169.99 -5.02 14.40 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.39 -10.19 9.44 30.88 0.29 -9.90 16 8 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 9 O -0.17 -4.30 9.31 0.05 0.00 -4.30 16 10 C 0.16 3.64 6.66 -38.93 -0.26 3.38 16 11 C -0.26 -5.56 9.11 -39.36 -0.36 -5.92 16 12 C 0.13 2.60 7.29 -39.43 -0.29 2.31 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 14 C -0.23 -4.17 10.02 -39.48 -0.40 -4.57 16 15 C -0.05 -0.88 8.65 -39.42 -0.34 -1.22 16 16 C 0.06 1.25 6.28 -83.47 -0.52 0.72 16 17 N -0.64 -11.83 5.19 -10.75 -0.06 -11.89 16 18 C 0.58 10.34 7.53 -12.62 -0.10 10.25 16 19 O -0.52 -10.27 13.41 5.23 0.07 -10.20 16 20 C -0.20 -2.98 6.32 -103.24 -0.65 -3.63 16 21 C -0.18 -2.07 10.60 -37.45 -0.40 -2.46 16 22 C -0.02 -0.21 12.03 29.28 0.35 0.14 16 23 O -0.17 -2.03 10.53 7.34 0.08 -1.95 16 24 C 0.09 1.30 7.99 30.16 0.24 1.54 16 25 Cl 0.06 0.75 27.91 -51.86 -1.45 -0.70 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.14 3.07 5.72 -52.48 -0.30 2.77 16 28 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.14 2.45 6.48 -52.48 -0.34 2.11 16 30 H 0.42 7.27 7.75 -40.82 -0.32 6.96 16 31 H 0.17 1.77 7.75 -52.49 -0.41 1.37 16 32 H 0.22 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 312.97 15.07 4.72 4.72 Total: -1.00 -29.73 312.97 -5.01 -34.73 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -1.62 Total: 8.54 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.52 Total: -8.34 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.70 Total: -34.10 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.15 Total: -16.44 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -1.45 Total: -0.70 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.73 -5.01 -34.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764856460.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.759 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds