Wall clock time and date at job start Tue Mar 31 2020 14:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86798 * 120.00324 * 2 1 4 4 H 1.48500 * 109.46927 * 269.99848 * 3 2 1 5 5 H 1.48501 * 109.47004 * 29.99451 * 3 2 1 6 6 H 1.48491 * 109.47556 * 149.99804 * 3 2 1 7 7 C 1.38637 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99986 * 180.02562 * 7 2 1 9 9 O 1.34801 * 120.00005 * 359.97438 * 7 2 1 10 10 C 1.35776 * 117.00456 * 174.52154 * 9 7 2 11 11 C 1.38743 * 120.08534 * 354.20182 * 10 9 7 12 12 C 1.38336 * 119.98011 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.92554 * 180.02562 * 12 11 10 14 14 C 1.38557 * 120.15788 * 359.97438 * 12 11 10 15 15 C 1.38189 * 120.17335 * 0.02562 * 14 12 11 16 16 C 1.38713 * 120.02051 * 0.26021 * 15 14 12 17 17 N 1.40036 * 120.07896 * 179.69934 * 16 15 14 18 18 C 1.34782 * 120.00081 * 34.08044 * 17 16 15 19 19 O 1.21651 * 119.99819 * 5.60969 * 18 17 16 20 20 C 1.47195 * 120.00189 * 185.61436 * 18 17 16 21 21 C 1.47083 * 127.20402 * 359.70648 * 20 18 17 22 22 C 1.34121 * 105.97545 * 179.83073 * 21 20 18 23 23 O 1.34294 * 109.17698 * 0.43573 * 22 21 20 24 24 C 1.33694 * 110.91559 * 359.71108 * 23 22 21 25 25 Cl 1.73598 * 125.82751 * 180.02562 * 24 23 22 26 26 H 0.97006 * 120.00456 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.00796 * 359.97438 * 11 10 9 28 28 H 1.07999 * 119.90986 * 180.02562 * 14 12 11 29 29 H 1.08005 * 119.98510 * 179.97438 * 15 14 12 30 30 H 0.96999 * 120.00198 * 214.08415 * 17 16 15 31 31 H 1.08000 * 127.01476 * 359.96619 * 21 20 18 32 32 H 1.07997 * 125.41279 * 180.10449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3680 0.0016 10 6 2.0694 -3.5041 -0.1134 11 6 3.4351 -3.4287 -0.3457 12 6 4.1816 -4.5876 -0.4620 13 9 5.5115 -4.5129 -0.6876 14 6 3.5686 -5.8249 -0.3465 15 6 2.2088 -5.9075 -0.1152 16 6 1.4523 -4.7502 -0.0033 17 7 0.0731 -4.8325 0.2248 18 6 -0.4265 -5.8301 0.9810 19 8 0.3264 -6.5986 1.5488 20 6 -1.8832 -5.9897 1.1198 21 6 -2.9312 -5.1547 0.5133 22 6 -4.0988 -5.6787 0.9143 23 8 -3.8589 -6.7362 1.7066 24 6 -2.5450 -6.9412 1.8440 25 17 -1.8058 -8.2014 2.7816 26 1 -0.4851 0.8401 -0.0004 27 1 3.9154 -2.4655 -0.4356 28 1 4.1553 -6.7271 -0.4376 29 1 1.7341 -6.8735 -0.0262 30 1 -0.5227 -4.1716 -0.1614 31 1 -2.7894 -4.2962 -0.1264 32 1 -5.0766 -5.3059 0.6473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764856460.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:40 Heat of formation + Delta-G solvation = -76.541828 kcal Electronic energy + Delta-G solvation = -24150.287266 eV Core-core repulsion = 20018.885916 eV Total energy + Delta-G solvation = -4131.401350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.035 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.84134 -43.69910 -41.56203 -40.11285 -38.16355 -37.98471 -35.64365 -34.31944 -34.09859 -31.16921 -30.73215 -29.91248 -27.41758 -25.39975 -23.91505 -23.21894 -22.34653 -21.24973 -20.15552 -19.90132 -19.25258 -18.13446 -17.71493 -17.58112 -17.07824 -16.90616 -16.56128 -16.19644 -16.01063 -15.75754 -15.43771 -15.35558 -15.16088 -14.71387 -14.24419 -14.01530 -13.99514 -13.73464 -13.41063 -13.26365 -13.05349 -12.61253 -12.36513 -12.33467 -12.14772 -11.69154 -11.30256 -11.04239 -11.00276 -10.82100 -9.77395 -9.58020 -8.78977 -8.51434 -6.17053 -0.16012 -0.03255 0.27707 0.44881 1.00257 1.38018 1.44545 1.52744 1.95125 2.10484 2.14624 2.43143 2.66268 3.05124 3.15208 3.43204 3.50138 3.58633 3.92697 4.13558 4.16312 4.33613 4.38445 4.61766 4.72335 4.89470 5.01177 5.16779 5.20921 5.27993 5.32807 5.49301 5.67409 5.92670 6.00079 6.39822 6.93055 7.02796 7.60917 8.69109 Molecular weight = 325.03amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.004230 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.816249 B = 6617.886030 C = 8740.913246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.007 4.007 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.417 4.417 8 H 0.098 0.902 9 O -0.201 6.201 10 C 0.134 3.866 11 C -0.264 4.264 12 C 0.126 3.874 13 F -0.144 7.144 14 C -0.203 4.203 15 C -0.047 4.047 16 C 0.061 3.939 17 N -0.641 5.641 18 C 0.580 3.420 19 O -0.545 6.545 20 C -0.224 4.224 21 C -0.196 4.196 22 C 0.008 3.992 23 O -0.167 6.167 24 C 0.089 3.911 25 Cl 0.056 6.944 26 H 0.275 0.725 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.417 0.583 31 H 0.179 0.821 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 -10.426 -0.072 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.115 0.885 9 O -0.106 6.106 10 C 0.080 3.920 11 C -0.285 4.285 12 C 0.106 3.894 13 F -0.122 7.122 14 C -0.223 4.223 15 C -0.067 4.067 16 C -0.034 4.034 17 N -0.285 5.285 18 C 0.370 3.630 19 O -0.424 6.424 20 C -0.230 4.230 21 C -0.215 4.215 22 C -0.057 4.057 23 O -0.064 6.064 24 C 0.009 3.991 25 Cl 0.085 6.915 26 H 0.085 0.915 27 H 0.155 0.845 28 H 0.177 0.823 29 H 0.167 0.833 30 H 0.254 0.746 31 H 0.196 0.804 32 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -7.421 -11.063 0.560 13.333 hybrid contribution 0.646 1.281 -0.158 1.444 sum -6.775 -9.782 0.402 11.906 Atomic orbital electron populations 1.70102 1.07461 1.29030 1.47230 1.26350 0.96850 1.02014 0.95447 0.84691 0.77851 0.75161 0.79269 1.18751 1.19472 1.18389 1.21722 0.92481 0.81112 1.53917 0.88470 1.83904 1.34689 1.11857 1.80119 1.19167 0.90201 0.87139 0.95500 1.20944 0.93987 0.99076 1.14476 1.17456 0.76956 0.94156 1.00813 1.91435 1.31303 1.97332 1.92166 1.20852 0.94999 0.96373 1.10044 1.20697 0.92963 0.96858 0.96230 1.17071 0.84304 0.90942 1.11088 1.42940 1.05784 1.29542 1.50237 1.17437 0.87070 0.80669 0.77831 1.90783 1.60033 1.44739 1.46851 1.20983 0.93646 1.00994 1.07379 1.23182 0.90427 1.02740 1.05156 1.24932 1.01960 0.85831 0.92939 1.83773 1.22213 1.44282 1.56110 1.22591 0.82523 0.95003 0.98965 1.98472 1.76493 1.47280 1.69291 0.91528 0.84546 0.82286 0.83279 0.74556 0.80361 0.71500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.70 13.67 21.61 0.30 -49.41 16 2 C -0.01 -0.34 5.49 84.83 0.47 0.13 16 3 Si 1.01 40.20 29.55 68.60 2.03 42.23 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.42 -22.43 9.44 67.92 0.64 -21.79 16 8 H 0.10 4.94 5.30 -2.91 -0.02 4.92 16 9 O -0.20 -10.77 9.31 -22.73 -0.21 -10.98 16 10 C 0.13 6.24 6.66 22.69 0.15 6.40 16 11 C -0.26 -11.50 9.11 22.41 0.20 -11.30 16 12 C 0.13 4.81 7.29 22.37 0.16 4.97 16 13 F -0.14 -5.17 17.26 44.97 0.78 -4.40 16 14 C -0.20 -6.93 10.02 22.33 0.22 -6.71 16 15 C -0.05 -1.73 8.65 22.37 0.19 -1.53 16 16 C 0.06 2.50 6.28 38.24 0.24 2.74 16 17 N -0.64 -24.15 5.19 -306.15 -1.59 -25.73 16 18 C 0.58 20.75 7.53 86.60 0.65 21.40 16 19 O -0.54 -21.32 13.41 -4.19 -0.06 -21.38 16 20 C -0.22 -6.58 6.32 -18.97 -0.12 -6.70 16 21 C -0.20 -4.34 10.60 23.65 0.25 -4.09 16 22 C 0.01 0.13 12.03 66.88 0.80 0.94 16 23 O -0.17 -3.56 10.53 3.33 0.04 -3.53 16 24 C 0.09 2.37 7.99 67.45 0.54 2.90 16 25 Cl 0.06 1.44 27.91 -2.72 -0.08 1.36 16 26 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 27 H 0.14 6.03 5.72 -2.91 -0.02 6.01 16 28 H 0.16 4.34 8.06 -2.91 -0.02 4.31 16 29 H 0.15 5.12 6.48 -2.91 -0.02 5.10 16 30 H 0.42 15.16 7.75 -92.71 -0.72 14.45 16 31 H 0.18 3.58 7.75 -2.91 -0.02 3.56 16 32 H 0.27 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -65.94 312.97 6.12 -59.82 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.51 Total: 24.65 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.41 Total: -12.64 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.29 Total: -75.14 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.23 Total: -35.89 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.40 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 17 Polarization: 1.44 SS G_CDS: -0.08 Total: 1.36 kcal Total: -65.94 6.12 -59.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764856460.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.726 kcal (2) G-P(sol) polarization free energy of solvation -65.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds