Wall clock time and date at job start Tue Mar 31 2020 14:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.47012 * 111.00090 * 66.04706 * 10 9 7 12 12 C 1.53104 * 109.25870 * 182.39288 * 11 10 9 13 13 O 1.43018 * 109.25485 * 303.14987 * 12 11 10 14 14 C 1.43022 * 113.74045 * 58.67008 * 13 12 11 15 15 H 1.08994 * 109.50429 * 61.26388 * 14 13 12 16 16 C 1.50697 * 109.50547 * 181.34945 * 14 13 12 17 17 C 1.38243 * 119.99147 * 39.72680 * 16 14 13 18 18 C 1.38219 * 120.01162 * 179.76343 * 17 16 14 19 19 C 1.38321 * 119.98525 * 0.51091 * 18 17 16 20 20 Br 1.89101 * 120.00698 * 179.72264 * 19 18 17 21 21 C 1.38321 * 119.98442 * 359.73815 * 19 18 17 22 22 C 1.38221 * 119.98870 * 0.02562 * 21 19 18 23 23 C 1.47013 * 110.99819 * 189.68021 * 10 9 7 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 26 26 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 27 27 H 1.09007 * 109.50529 * 302.32503 * 11 10 9 28 28 H 1.08998 * 109.51150 * 62.40970 * 11 10 9 29 29 H 1.09001 * 109.50474 * 63.07876 * 12 11 10 30 30 H 1.08994 * 109.50679 * 183.21776 * 12 11 10 31 31 H 1.08009 * 119.99162 * 0.02562 * 17 16 14 32 32 H 1.07995 * 120.00619 * 180.23098 * 18 17 16 33 33 H 1.08001 * 120.00601 * 180.02562 * 21 19 18 34 34 H 1.07999 * 119.99377 * 180.02562 * 22 21 19 35 35 H 1.08998 * 109.50507 * 297.54197 * 23 10 9 36 36 H 1.08998 * 109.50915 * 57.66857 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 3.6520 -3.2612 -1.2536 12 6 4.1273 -4.7150 -1.1871 13 8 5.5341 -4.7400 -0.9306 14 6 5.9097 -4.0849 0.2840 15 1 5.4361 -4.5850 1.1287 16 6 7.4074 -4.1388 0.4424 17 6 8.2255 -3.9600 -0.6574 18 6 9.5993 -4.0045 -0.5117 19 6 10.1552 -4.2386 0.7330 20 35 12.0345 -4.3074 0.9317 21 6 9.3362 -4.4226 1.8324 22 6 7.9626 -4.3731 1.6866 23 6 5.4524 -2.6247 0.2323 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6803 -0.8889 26 1 3.8746 -0.6799 0.8911 27 1 2.5710 -3.2376 -1.3919 28 1 4.1370 -2.7569 -2.0894 29 1 3.6019 -5.2334 -0.3850 30 1 3.9217 -5.2090 -2.1367 31 1 7.7912 -3.7812 -1.6301 32 1 10.2384 -3.8611 -1.3704 33 1 9.7699 -4.6050 2.8045 34 1 7.3230 -4.5163 2.5449 35 1 5.9667 -2.1107 -0.5796 36 1 5.6857 -2.1366 1.1785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063580310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:46 Heat of formation + Delta-G solvation = -9.470167 kcal Electronic energy + Delta-G solvation = -19340.990576 eV Core-core repulsion = 16257.363385 eV Total energy + Delta-G solvation = -3083.627191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04355 -38.60300 -35.40888 -33.34616 -32.46982 -31.25169 -30.98394 -29.01784 -28.40331 -25.39324 -23.81268 -23.05412 -22.08067 -20.80043 -19.81095 -17.13675 -16.93059 -16.21342 -15.80408 -15.44841 -14.74605 -14.53626 -14.43730 -14.29674 -13.87398 -13.64377 -13.31443 -13.26129 -12.73959 -12.35446 -11.76239 -11.65774 -11.45936 -11.18824 -11.00457 -10.90125 -10.84572 -10.68326 -10.51786 -10.22330 -9.89926 -9.48410 -9.28725 -9.20021 -8.70019 -8.64739 -7.57678 -6.12404 -4.10666 0.85583 1.13683 1.39848 3.23281 3.31428 3.32983 3.36868 3.86454 4.35624 4.47956 4.60223 4.71487 4.89027 5.10531 5.17348 5.20702 5.28039 5.36396 5.48677 5.50262 5.65073 5.71553 5.77930 5.85263 5.99514 6.03563 6.12172 6.25164 6.41958 6.48136 6.61097 6.72792 6.83434 7.32539 7.48276 7.72300 7.87628 8.55349 8.94515 9.48770 11.00458 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.002744 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.293521 B =10202.265833 C =10925.790653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.525 5.525 11 C 0.025 3.975 12 C 0.064 3.936 13 O -0.384 6.384 14 C 0.133 3.867 15 H 0.077 0.923 16 C -0.057 4.057 17 C -0.086 4.086 18 C -0.094 4.094 19 C -0.092 4.092 20 Br -0.059 7.059 21 C -0.093 4.093 22 C -0.102 4.102 23 C 0.028 3.972 24 H 0.265 0.735 25 H -0.014 1.014 26 H 0.030 0.970 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.034 0.966 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.974 -10.519 1.114 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.192 1.192 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.103 4.103 12 C -0.012 4.012 13 O -0.303 6.303 14 C 0.075 3.925 15 H 0.095 0.905 16 C -0.058 4.058 17 C -0.105 4.105 18 C -0.114 4.114 19 C -0.171 4.171 20 Br 0.026 6.974 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.101 4.101 24 H 0.074 0.926 25 H 0.003 0.997 26 H 0.048 0.952 27 H 0.118 0.882 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.052 0.948 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.409 -10.746 1.455 25.799 hybrid contribution 0.126 1.630 -0.561 1.728 sum 23.535 -9.116 0.894 25.255 Atomic orbital electron populations 1.69886 1.06110 1.26965 1.50733 1.24891 0.94745 0.98868 0.94712 0.86868 0.80351 0.84022 0.78542 1.20288 1.19209 1.21023 1.20989 0.88514 0.94789 1.50772 0.90075 1.20202 0.97226 0.83601 0.95271 1.62200 1.09415 1.19629 1.33728 1.22690 1.03176 0.93473 0.90950 1.22769 0.80465 0.96728 1.01267 1.87903 1.24495 1.77075 1.40875 1.20919 0.89673 0.93344 0.88578 0.90479 1.19840 0.94641 0.97692 0.93622 1.21071 0.92135 0.97831 0.99452 1.21120 0.95407 0.99084 0.95805 1.21780 0.89997 1.08504 0.96812 1.96696 1.04786 1.97706 1.98221 1.21037 0.93110 0.99341 0.97763 1.21027 0.94381 0.99418 0.97230 1.22700 0.90808 0.94997 1.01587 0.92554 0.99679 0.95178 0.88175 0.95071 0.92318 0.88747 0.84614 0.85038 0.84903 0.84696 0.94765 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.96 55.43 0.77 -26.22 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.16 27.47 -169.99 -4.67 16.50 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.19 9.04 -34.44 -0.31 -14.50 16 8 H 0.08 2.43 7.36 -52.49 -0.39 2.04 16 9 C 0.16 3.87 3.79 -4.98 -0.02 3.85 16 10 N -0.52 -10.66 4.72 -235.75 -1.11 -11.77 16 11 C 0.03 0.47 5.46 -3.71 -0.02 0.45 16 12 C 0.06 0.96 7.01 37.21 0.26 1.22 16 13 O -0.38 -5.86 9.79 -35.23 -0.34 -6.21 16 14 C 0.13 1.92 3.01 -27.83 -0.08 1.84 16 15 H 0.08 1.09 8.00 -51.93 -0.42 0.68 16 16 C -0.06 -0.72 4.98 -104.62 -0.52 -1.24 16 17 C -0.09 -1.04 9.36 -39.59 -0.37 -1.41 16 18 C -0.09 -1.02 9.79 -39.56 -0.39 -1.41 16 19 C -0.09 -0.98 6.22 -39.52 -0.25 -1.22 16 20 Br -0.06 -0.56 33.70 -68.01 -2.29 -2.86 16 21 C -0.09 -0.94 9.79 -39.56 -0.39 -1.33 16 22 C -0.10 -1.10 9.67 -39.59 -0.38 -1.49 16 23 C 0.03 0.47 4.91 -3.71 -0.02 0.45 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H -0.01 -0.35 7.55 -51.93 -0.39 -0.74 16 26 H 0.03 0.73 7.10 -51.93 -0.37 0.36 16 27 H 0.10 2.01 6.81 -51.92 -0.35 1.66 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.14 1.63 7.77 -52.48 -0.41 1.22 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.23 8.04 -52.49 -0.42 0.81 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -29.86 316.58 -10.33 -40.19 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.87 Total: -1.51 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.58 Total: -12.89 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.34 Total: -37.99 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.34 Total: -6.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.86 -10.33 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063580310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.718 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds