Wall clock time and date at job start Tue Mar 31 2020 15:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38369 * 119.92525 * 2 1 4 4 C 1.38424 * 120.28286 * 179.97438 * 3 2 1 5 5 Br 1.89095 * 119.93435 * 179.97438 * 4 3 2 6 6 C 1.38074 * 120.12471 * 359.97438 * 4 3 2 7 7 C 1.39538 * 119.84035 * 0.02562 * 6 4 3 8 8 C 1.47855 * 120.13335 * 179.72299 * 7 6 4 9 9 O 1.21559 * 119.99634 * 173.78890 * 8 7 6 10 10 N 1.34772 * 120.00223 * 353.78851 * 8 7 6 11 11 C 1.46504 * 119.99853 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47117 * 325.00469 * 11 10 8 13 13 C 1.52999 * 109.46744 * 85.00254 * 11 10 8 14 14 C 1.50696 * 109.47086 * 205.00171 * 11 10 8 15 15 H 1.08000 * 120.00210 * 0.02562 * 14 11 10 16 16 C 1.37877 * 119.99993 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00279 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99897 * 359.97438 * 16 14 11 19 19 H 1.48510 * 109.46914 * 90.00300 * 18 16 14 20 20 H 1.48500 * 109.47218 * 209.99797 * 18 16 14 21 21 H 1.48497 * 109.47351 * 330.00328 * 18 16 14 22 22 C 1.37944 * 119.91899 * 179.97438 * 2 1 3 23 23 C 1.50690 * 120.06538 * 0.05100 * 22 2 1 24 24 H 1.09002 * 109.46886 * 89.99910 * 1 2 3 25 25 H 1.08990 * 109.47118 * 210.00065 * 1 2 3 26 26 H 1.09001 * 109.46909 * 330.00159 * 1 2 3 27 27 H 1.07995 * 119.85537 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.07299 * 180.02562 * 6 4 3 29 29 H 0.96998 * 120.00003 * 359.97438 * 10 8 7 30 30 H 1.09002 * 109.47519 * 60.00013 * 13 11 10 31 31 H 1.09000 * 109.46926 * 180.02562 * 13 11 10 32 32 H 1.08999 * 109.47670 * 300.00010 * 13 11 10 33 33 H 0.96998 * 120.00082 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.47504 * 263.46484 * 23 22 2 35 35 H 1.09007 * 109.47274 * 23.46796 * 23 22 2 36 36 H 1.09006 * 109.47456 * 143.47024 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5815 1.2078 0.0005 5 35 4.5148 2.8524 -0.0002 6 6 4.2819 0.0180 0.0016 7 6 3.5910 -1.1944 0.0016 8 6 4.3345 -2.4724 -0.0034 9 8 3.7359 -3.5242 0.1105 10 7 5.6759 -2.4712 -0.1343 11 6 6.4125 -3.7375 -0.1387 12 1 5.9293 -4.4414 0.5389 13 6 6.4217 -4.3172 -1.5546 14 6 7.8293 -3.4961 0.3144 15 1 8.1490 -2.4991 0.5796 16 6 8.7175 -4.5479 0.3905 17 7 9.9539 -4.3373 0.7864 18 14 8.1645 -6.2723 -0.0676 19 1 8.4027 -6.5003 -1.5156 20 1 8.9348 -7.2656 0.7231 21 1 6.7164 -6.4220 0.2254 22 6 2.1950 -1.1956 0.0005 23 6 1.4412 -2.5004 0.0000 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6537 2.1324 -0.0004 28 1 5.3619 0.0257 0.0024 29 1 6.1535 -1.6319 -0.2256 30 1 6.9050 -3.6133 -2.2323 31 1 6.9694 -5.2596 -1.5579 32 1 5.3970 -4.4918 -1.8825 33 1 10.5786 -5.0773 0.8403 34 1 1.3599 -2.8736 1.0208 35 1 0.4435 -2.3435 -0.4101 36 1 1.9750 -3.2282 -0.6114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:47 Heat of formation + Delta-G solvation = -12.828344 kcal Electronic energy + Delta-G solvation = -19475.269446 eV Core-core repulsion = 16391.496634 eV Total energy + Delta-G solvation = -3083.772812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34041 -38.38760 -35.23870 -33.99491 -32.68059 -32.18063 -30.50455 -29.87567 -27.52174 -26.27715 -25.21911 -23.76391 -21.18130 -20.70295 -19.60176 -17.65100 -16.39473 -16.25388 -15.74453 -15.15701 -14.92266 -14.64298 -13.92380 -13.87124 -13.20193 -13.06700 -12.99842 -12.78536 -12.62048 -12.54544 -12.23845 -12.12922 -11.80253 -11.65345 -11.31792 -11.07210 -10.82374 -10.63318 -10.42792 -10.21025 -9.69898 -9.26707 -9.10422 -9.00359 -8.78229 -8.59363 -8.19261 -6.22537 -4.25588 0.75799 0.99754 1.47973 2.97190 3.22024 3.34202 3.37930 3.78220 3.84011 4.29846 4.49464 4.69421 4.86047 4.97716 5.04066 5.12172 5.23021 5.38599 5.47518 5.53089 5.73340 5.81260 5.89285 5.93846 6.07677 6.22530 6.29006 6.32707 6.48335 6.52626 6.69509 6.82903 7.14994 7.23187 7.47316 8.09341 8.46178 8.71838 8.83049 9.37547 10.89581 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.004099 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.785297 B = 6828.472069 C = 8493.025029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.071 4.071 4 C -0.102 4.102 5 Br -0.051 7.051 6 C -0.059 4.059 7 C -0.119 4.119 8 C 0.546 3.454 9 O -0.543 6.543 10 N -0.693 5.693 11 C 0.237 3.763 12 H 0.051 0.949 13 C -0.161 4.161 14 C -0.537 4.537 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.886 3.114 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.262 1.262 22 C -0.011 4.011 23 C -0.125 4.125 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.394 0.606 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.268 0.732 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.073 14.102 -2.812 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.091 4.091 4 C -0.181 4.181 5 Br 0.035 6.965 6 C -0.080 4.080 7 C -0.124 4.124 8 C 0.332 3.668 9 O -0.423 6.423 10 N -0.341 5.341 11 C 0.134 3.866 12 H 0.069 0.931 13 C -0.219 4.219 14 C -0.574 4.574 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.186 1.186 22 C -0.013 4.013 23 C -0.181 4.181 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.229 0.771 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.906 13.866 -2.687 22.029 hybrid contribution 0.156 -0.695 -0.285 0.767 sum -16.749 13.171 -2.971 21.514 Atomic orbital electron populations 1.20818 0.90252 1.03228 1.02657 1.19726 0.96517 0.91705 1.01750 1.21077 0.91891 0.98429 0.97696 1.21583 0.94692 0.91670 1.10184 1.96721 1.75972 1.25983 1.97834 1.21335 1.00492 0.90230 0.95917 1.20060 0.93785 0.93445 1.05066 1.18099 0.82932 0.87953 0.77794 1.90677 1.67878 1.32658 1.51106 1.46186 1.05480 1.11577 1.70835 1.19153 0.92389 0.81810 0.93291 0.93122 1.22454 0.99235 1.00409 0.99850 1.21021 0.92574 0.97298 1.46554 0.90164 1.24822 0.94555 0.98948 0.94126 1.69866 1.04195 1.32466 1.46262 0.86877 0.79414 0.84148 0.78050 1.20278 1.22123 1.18637 1.20048 0.92157 0.95881 0.93188 1.21175 0.98693 0.94157 1.04068 0.90875 0.90699 0.91350 0.84881 0.84301 0.77098 0.92757 0.93342 0.94481 0.92243 0.90353 0.92232 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.19 36.01 0.33 -0.56 16 2 C -0.10 -1.07 5.87 -104.68 -0.61 -1.68 16 3 C -0.07 -0.77 9.43 -39.46 -0.37 -1.14 16 4 C -0.10 -1.25 6.22 -39.57 -0.25 -1.50 16 5 Br -0.05 -0.56 33.69 -68.01 -2.29 -2.85 16 6 C -0.06 -0.82 9.26 -39.16 -0.36 -1.18 16 7 C -0.12 -1.85 5.87 -104.97 -0.62 -2.47 16 8 C 0.55 10.39 7.67 -12.33 -0.09 10.29 16 9 O -0.54 -11.55 13.01 5.31 0.07 -11.48 16 10 N -0.69 -13.85 5.02 -55.88 -0.28 -14.13 16 11 C 0.24 5.60 2.15 -69.08 -0.15 5.45 16 12 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 13 C -0.16 -3.57 8.96 37.16 0.33 -3.23 16 14 C -0.54 -14.41 9.31 -34.44 -0.32 -14.73 16 15 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 16 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 17 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 18 Si 0.89 21.56 24.37 -169.99 -4.14 17.42 16 19 H -0.28 -6.50 6.87 56.52 0.39 -6.12 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 22 C -0.01 -0.15 5.91 -104.23 -0.62 -0.77 16 23 C -0.13 -1.63 8.09 36.00 0.29 -1.34 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.56 6.56 -51.93 -0.34 0.22 16 26 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.14 1.84 6.46 -52.49 -0.34 1.51 16 29 H 0.39 7.06 6.61 -40.82 -0.27 6.79 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.60 6.33 -51.93 -0.33 0.27 16 36 H 0.10 1.58 5.84 -51.93 -0.30 1.28 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -30.08 310.65 -7.95 -38.04 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.23 Total: 4.58 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.53 Total: -10.76 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.49 Total: -39.63 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.48 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.08 -7.95 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.210 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds