Wall clock time and date at job start Tue Mar 31 2020 15:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38369 * 119.92525 * 2 1 4 4 C 1.38424 * 120.28286 * 179.97438 * 3 2 1 5 5 Br 1.89095 * 119.93435 * 179.97438 * 4 3 2 6 6 C 1.38074 * 120.12471 * 359.97438 * 4 3 2 7 7 C 1.39538 * 119.84035 * 0.02562 * 6 4 3 8 8 C 1.47855 * 120.13335 * 179.72299 * 7 6 4 9 9 O 1.21559 * 119.99634 * 173.78890 * 8 7 6 10 10 N 1.34772 * 120.00223 * 353.78851 * 8 7 6 11 11 C 1.46504 * 119.99853 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47117 * 325.00469 * 11 10 8 13 13 C 1.52999 * 109.46744 * 85.00254 * 11 10 8 14 14 C 1.50696 * 109.47086 * 205.00171 * 11 10 8 15 15 H 1.08000 * 120.00210 * 0.02562 * 14 11 10 16 16 C 1.37877 * 119.99993 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00279 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99897 * 359.97438 * 16 14 11 19 19 H 1.48510 * 109.46914 * 90.00300 * 18 16 14 20 20 H 1.48500 * 109.47218 * 209.99797 * 18 16 14 21 21 H 1.48497 * 109.47351 * 330.00328 * 18 16 14 22 22 C 1.37944 * 119.91899 * 179.97438 * 2 1 3 23 23 C 1.50690 * 120.06538 * 0.05100 * 22 2 1 24 24 H 1.09002 * 109.46886 * 89.99910 * 1 2 3 25 25 H 1.08990 * 109.47118 * 210.00065 * 1 2 3 26 26 H 1.09001 * 109.46909 * 330.00159 * 1 2 3 27 27 H 1.07995 * 119.85537 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.07299 * 180.02562 * 6 4 3 29 29 H 0.96998 * 120.00003 * 359.97438 * 10 8 7 30 30 H 1.09002 * 109.47519 * 60.00013 * 13 11 10 31 31 H 1.09000 * 109.46926 * 180.02562 * 13 11 10 32 32 H 1.08999 * 109.47670 * 300.00010 * 13 11 10 33 33 H 0.96998 * 120.00082 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.47504 * 263.46484 * 23 22 2 35 35 H 1.09007 * 109.47274 * 23.46796 * 23 22 2 36 36 H 1.09006 * 109.47456 * 143.47024 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5815 1.2078 0.0005 5 35 4.5148 2.8524 -0.0002 6 6 4.2819 0.0180 0.0016 7 6 3.5910 -1.1944 0.0016 8 6 4.3345 -2.4724 -0.0034 9 8 3.7359 -3.5242 0.1105 10 7 5.6759 -2.4712 -0.1343 11 6 6.4125 -3.7375 -0.1387 12 1 5.9293 -4.4414 0.5389 13 6 6.4217 -4.3172 -1.5546 14 6 7.8293 -3.4961 0.3144 15 1 8.1490 -2.4991 0.5796 16 6 8.7175 -4.5479 0.3905 17 7 9.9539 -4.3373 0.7864 18 14 8.1645 -6.2723 -0.0676 19 1 8.4027 -6.5003 -1.5156 20 1 8.9348 -7.2656 0.7231 21 1 6.7164 -6.4220 0.2254 22 6 2.1950 -1.1956 0.0005 23 6 1.4412 -2.5004 0.0000 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6537 2.1324 -0.0004 28 1 5.3619 0.0257 0.0024 29 1 6.1535 -1.6319 -0.2256 30 1 6.9050 -3.6133 -2.2323 31 1 6.9694 -5.2596 -1.5579 32 1 5.3970 -4.4918 -1.8825 33 1 10.5786 -5.0773 0.8403 34 1 1.3599 -2.8736 1.0208 35 1 0.4435 -2.3435 -0.4101 36 1 1.9750 -3.2282 -0.6114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:46 Heat of formation + Delta-G solvation = -31.282759 kcal Electronic energy + Delta-G solvation = -19476.069690 eV Core-core repulsion = 16391.496634 eV Total energy + Delta-G solvation = -3084.573056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.55457 -39.71636 -36.96985 -35.08853 -34.33000 -33.53893 -31.70855 -31.29348 -28.43169 -27.31261 -27.18436 -25.03468 -22.74281 -21.80468 -21.12439 -19.26171 -18.06437 -17.62765 -16.91781 -16.60699 -16.31287 -16.07754 -15.32030 -15.12865 -14.77733 -14.44279 -14.16500 -14.09597 -13.79172 -13.66575 -13.47451 -13.40497 -13.16782 -12.95972 -12.74881 -12.67335 -12.15831 -11.98542 -11.59630 -11.59216 -11.33755 -11.30653 -10.88231 -10.59197 -10.09789 -9.82880 -9.53337 -8.39057 -6.45806 -0.30616 0.01590 0.53413 1.27453 1.35503 1.45033 1.76353 2.25452 2.31105 2.61091 2.97159 3.55765 3.63804 3.83543 4.04435 4.12787 4.25262 4.41195 4.52343 4.58117 4.62946 4.67339 4.80432 4.83271 4.86643 4.93802 4.96448 5.13724 5.19417 5.25728 5.31574 5.40506 5.49456 5.59596 5.75225 6.10777 6.54673 6.76592 7.15319 7.32229 8.76259 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.004099 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.785297 B = 6828.472069 C = 8493.025029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.060 4.060 4 C -0.107 4.107 5 Br -0.039 7.039 6 C -0.067 4.067 7 C -0.142 4.142 8 C 0.545 3.455 9 O -0.570 6.570 10 N -0.697 5.697 11 C 0.243 3.757 12 H 0.028 0.972 13 C -0.155 4.155 14 C -0.536 4.536 15 H 0.054 0.946 16 C 0.030 3.970 17 N -0.933 5.933 18 Si 0.940 3.060 19 H -0.259 1.259 20 H -0.292 1.292 21 H -0.260 1.260 22 C -0.022 4.022 23 C -0.120 4.120 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.164 0.836 28 H 0.136 0.864 29 H 0.403 0.597 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.271 0.729 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.633 15.262 -3.590 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.187 4.187 5 Br 0.047 6.953 6 C -0.088 4.088 7 C -0.146 4.146 8 C 0.334 3.666 9 O -0.452 6.452 10 N -0.346 5.346 11 C 0.138 3.862 12 H 0.046 0.954 13 C -0.213 4.213 14 C -0.574 4.574 15 H 0.072 0.928 16 C -0.170 4.170 17 N -0.572 5.572 18 Si 0.767 3.233 19 H -0.184 1.184 20 H -0.219 1.219 21 H -0.185 1.185 22 C -0.024 4.024 23 C -0.176 4.176 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.182 0.818 28 H 0.153 0.847 29 H 0.239 0.761 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.479 15.055 -3.476 24.863 hybrid contribution 0.896 -0.894 0.001 1.266 sum -18.583 14.161 -3.475 23.621 Atomic orbital electron populations 1.20936 0.87422 1.04578 1.04040 1.20083 0.98385 0.90565 0.99802 1.21483 0.91311 0.99672 0.95480 1.21726 0.95536 0.91540 1.09877 1.96737 1.76072 1.24743 1.97789 1.21308 1.00470 0.90491 0.96499 1.19792 0.94540 0.91987 1.08233 1.18618 0.82339 0.89147 0.76513 1.90662 1.68245 1.34120 1.52147 1.46029 1.06115 1.10718 1.71706 1.18817 0.90529 0.83098 0.93740 0.95423 1.22343 1.00013 1.00207 0.98730 1.21229 0.94188 0.96193 1.45819 0.92756 1.25562 0.94518 1.02702 0.94195 1.69977 1.05438 1.33773 1.47991 0.85984 0.78907 0.79690 0.78693 1.18438 1.21904 1.18471 1.20239 0.91448 0.97198 0.93488 1.21093 0.99979 0.93282 1.03249 0.89290 0.90268 0.89199 0.81799 0.84672 0.76125 0.91817 0.93815 0.93312 0.91990 0.91068 0.88975 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.19 71.24 0.65 -0.64 16 2 C -0.09 -1.67 5.87 -19.90 -0.12 -1.79 16 3 C -0.06 -1.10 9.43 22.35 0.21 -0.89 16 4 C -0.11 -2.43 6.22 22.27 0.14 -2.29 16 5 Br -0.04 -0.79 33.69 -20.37 -0.69 -1.48 16 6 C -0.07 -1.83 9.26 22.54 0.21 -1.62 16 7 C -0.14 -4.37 5.87 -20.09 -0.12 -4.49 16 8 C 0.55 21.14 7.67 86.79 0.67 21.80 16 9 O -0.57 -24.78 13.01 -3.90 -0.05 -24.83 16 10 N -0.70 -28.51 5.02 -448.97 -2.25 -30.77 16 11 C 0.24 11.65 2.15 44.24 0.10 11.74 16 12 H 0.03 1.47 6.63 -2.39 -0.02 1.45 16 13 C -0.15 -6.76 8.96 71.98 0.65 -6.12 16 14 C -0.54 -29.54 9.31 25.60 0.24 -29.30 16 15 H 0.05 3.20 7.98 -2.91 -0.02 3.17 16 16 C 0.03 1.71 5.45 84.65 0.46 2.17 16 17 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 18 Si 0.94 44.60 24.37 68.60 1.67 46.27 16 19 H -0.26 -11.50 6.87 99.48 0.68 -10.82 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.26 -12.19 6.53 99.48 0.65 -11.54 16 22 C -0.02 -0.58 5.91 -19.61 -0.12 -0.69 16 23 C -0.12 -3.01 8.09 71.23 0.58 -2.43 16 24 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.08 0.88 6.56 -2.39 -0.02 0.86 16 26 H 0.09 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 28 H 0.14 3.65 6.46 -2.91 -0.02 3.63 16 29 H 0.40 14.90 6.61 -92.71 -0.61 14.29 16 30 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.04 1.93 3.27 -2.39 -0.01 1.93 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 1.63 6.33 -2.38 -0.02 1.61 16 36 H 0.07 2.28 5.84 -2.38 -0.01 2.26 16 Total: -1.00 -65.90 310.65 2.95 -62.95 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.43 Total: 18.26 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 3.54 Total: -14.55 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -1.95 Total: -86.62 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.27 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.69 Total: -1.48 kcal Total: -65.90 2.95 -62.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.667 kcal (2) G-P(sol) polarization free energy of solvation -65.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds