Wall clock time and date at job start Tue Mar 31 2020 14:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47399 * 2 1 4 4 C 1.46496 * 120.00025 * 270.00171 * 3 2 1 5 5 C 1.50697 * 109.47126 * 269.99879 * 4 3 2 6 6 H 1.08004 * 120.00054 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00029 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99890 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99932 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47384 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47209 * 120.00140 * 9 7 5 12 12 H 1.48498 * 109.46945 * 239.99711 * 9 7 5 13 13 C 1.34772 * 119.99760 * 90.00015 * 3 2 1 14 14 O 1.21281 * 119.99940 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00069 * 0.02562 * 13 3 2 16 16 C 1.50706 * 109.47001 * 179.97438 * 15 13 3 17 17 C 1.38232 * 119.99183 * 269.72487 * 16 15 13 18 18 C 1.38219 * 120.00911 * 179.77090 * 17 16 15 19 19 C 1.38321 * 119.99156 * 0.50234 * 18 17 16 20 20 Br 1.89099 * 120.01426 * 179.72508 * 19 18 17 21 21 C 1.38333 * 119.97728 * 359.75088 * 19 18 17 22 22 C 1.38214 * 119.98743 * 359.97438 * 21 19 18 23 23 H 1.09001 * 109.46863 * 299.99939 * 1 2 3 24 24 H 1.08996 * 109.47344 * 59.99864 * 1 2 3 25 25 H 1.09006 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46863 * 240.00061 * 2 1 3 27 27 H 1.09004 * 109.47053 * 120.00302 * 2 1 3 28 28 H 1.09004 * 109.46974 * 29.99659 * 4 3 2 29 29 H 1.08998 * 109.47423 * 149.99953 * 4 3 2 30 30 H 0.96999 * 120.00110 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46978 * 60.00374 * 15 13 3 32 32 H 1.09000 * 109.46976 * 299.99619 * 15 13 3 33 33 H 1.08005 * 119.99688 * 0.02562 * 17 16 15 34 34 H 1.08006 * 120.00561 * 180.23621 * 18 17 16 35 35 H 1.08004 * 120.00190 * 179.97438 * 21 19 18 36 36 H 1.08005 * 119.99333 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8349 -1.7037 6 1 4.3426 1.2301 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6175 9 14 5.9133 2.0963 -3.4171 10 1 6.6007 1.2402 -2.4171 11 1 5.9203 1.4182 -4.7382 12 1 6.6215 3.3971 -3.5247 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1600 1.1672 15 6 1.9923 1.3058 2.4723 16 6 2.3193 2.2289 3.6178 17 6 3.5964 2.2490 4.1462 18 6 3.8980 3.0989 5.1937 19 6 2.9188 3.9220 5.7200 20 35 3.3286 5.0794 7.1582 21 6 1.6395 3.8978 5.1943 22 6 1.3404 3.0517 4.1432 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5816 1.6876 -2.0283 29 1 2.0956 3.1410 -1.1384 30 1 3.6754 3.5170 -4.4434 31 1 2.6229 0.4186 2.5298 32 1 0.9444 1.0114 2.5302 33 1 4.3599 1.6033 3.7378 34 1 4.8969 3.1172 5.6040 35 1 0.8745 4.5400 5.6053 36 1 0.3415 3.0324 3.7329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454266.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:51 Heat of formation + Delta-G solvation = -16.524120 kcal Electronic energy + Delta-G solvation = -19249.740426 eV Core-core repulsion = 16165.807353 eV Total energy + Delta-G solvation = -3083.933073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79158 -38.52537 -35.31501 -33.38679 -32.71486 -31.05225 -30.61222 -30.09135 -27.84754 -26.17820 -23.08414 -22.84089 -22.77248 -21.15657 -18.39149 -16.68961 -16.56943 -16.28295 -15.69058 -15.46490 -14.94759 -14.35874 -14.16812 -13.52763 -13.43953 -13.32098 -13.02393 -12.86017 -12.56968 -12.05038 -11.86311 -11.59283 -11.31194 -11.17544 -11.09926 -10.91634 -10.79078 -10.71418 -10.53613 -10.35498 -10.14183 -9.63081 -9.03021 -8.99324 -8.48630 -8.44517 -7.68296 -6.05569 -4.10239 1.09364 1.34500 1.58143 3.28646 3.35310 3.37909 3.42526 3.55277 4.02431 4.44004 4.72900 4.76351 4.89155 5.13441 5.21185 5.28260 5.30813 5.36550 5.52460 5.55806 5.62841 5.72119 5.79549 5.96005 6.01008 6.18675 6.20204 6.21313 6.45560 6.56818 6.81535 7.05511 7.43514 7.53343 7.90964 8.22384 8.40093 8.89082 9.07781 9.55040 11.02562 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.003072 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.405181 B = 9112.425235 C =10160.944065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.533 6.533 15 C -0.110 4.110 16 C -0.036 4.036 17 C -0.100 4.100 18 C -0.089 4.089 19 C -0.095 4.095 20 Br -0.063 7.063 21 C -0.090 4.090 22 C -0.101 4.101 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 -3.689 20.437 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.330 5.330 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.410 6.410 15 C -0.150 4.150 16 C -0.037 4.037 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.174 4.174 20 Br 0.022 6.978 21 C -0.110 4.110 22 C -0.120 4.120 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.414 -2.534 20.775 21.389 hybrid contribution 0.880 -0.408 -0.847 1.288 sum -3.534 -2.942 19.928 20.451 Atomic orbital electron populations 1.22226 0.96817 1.01428 1.02317 1.21426 0.93497 0.84245 1.02715 1.48263 1.63796 1.13246 1.07675 1.19264 0.96258 0.93631 0.78102 1.21470 0.96935 1.31798 1.06244 0.92450 1.24937 0.97836 0.94926 0.96422 1.69938 1.35588 1.33486 1.14337 0.86456 0.84665 0.78070 0.78304 1.19817 1.20959 1.20878 1.20094 0.78945 0.87012 0.84693 1.90707 1.45294 1.17917 1.87072 1.20867 1.03911 0.98405 0.91780 1.19548 0.93672 0.95982 0.94481 1.21028 0.96156 0.99039 0.95618 1.21023 0.98455 0.95002 0.96400 1.21687 0.96968 1.00482 0.98275 1.96661 1.94811 1.63121 1.43237 1.21007 0.94846 0.98717 0.96426 1.20985 0.99706 0.95552 0.95766 0.93091 0.92031 0.92149 0.89940 0.91698 0.95048 0.93940 0.92775 0.88271 0.88362 0.85188 0.85187 0.85224 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.15 0.38 -1.74 16 2 C 0.11 1.59 5.93 -4.05 -0.02 1.56 16 3 N -0.60 -12.15 2.46 -175.07 -0.43 -12.58 16 4 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.51 10.09 7.67 -10.99 -0.08 10.01 16 14 O -0.53 -13.23 15.61 5.56 0.09 -13.14 16 15 C -0.11 -1.51 4.38 -29.03 -0.13 -1.64 16 16 C -0.04 -0.51 4.37 -104.62 -0.46 -0.97 16 17 C -0.10 -1.36 9.70 -39.59 -0.38 -1.75 16 18 C -0.09 -1.15 9.79 -39.56 -0.39 -1.53 16 19 C -0.09 -1.22 6.22 -39.52 -0.25 -1.47 16 20 Br -0.06 -0.72 33.70 -68.01 -2.29 -3.01 16 21 C -0.09 -1.13 9.79 -39.56 -0.39 -1.52 16 22 C -0.10 -1.33 9.70 -39.59 -0.38 -1.72 16 23 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 27 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.10 1.16 7.34 -51.93 -0.38 0.78 16 32 H 0.10 1.09 7.13 -51.93 -0.37 0.72 16 33 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -33.01 330.05 -9.26 -42.27 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.77 Total: -1.61 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -2.55 Total: -7.90 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.31 Total: -38.36 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.29 Total: -3.01 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.01 -9.26 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454266.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.750 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds