Wall clock time and date at job start Tue Mar 31 2020 14:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47399 * 2 1 4 4 C 1.46496 * 120.00025 * 270.00171 * 3 2 1 5 5 C 1.50697 * 109.47126 * 269.99879 * 4 3 2 6 6 H 1.08004 * 120.00054 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00029 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99890 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99932 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47384 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47209 * 120.00140 * 9 7 5 12 12 H 1.48498 * 109.46945 * 239.99711 * 9 7 5 13 13 C 1.34772 * 119.99760 * 90.00015 * 3 2 1 14 14 O 1.21281 * 119.99940 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00069 * 0.02562 * 13 3 2 16 16 C 1.50706 * 109.47001 * 179.97438 * 15 13 3 17 17 C 1.38232 * 119.99183 * 269.72487 * 16 15 13 18 18 C 1.38219 * 120.00911 * 179.77090 * 17 16 15 19 19 C 1.38321 * 119.99156 * 0.50234 * 18 17 16 20 20 Br 1.89099 * 120.01426 * 179.72508 * 19 18 17 21 21 C 1.38333 * 119.97728 * 359.75088 * 19 18 17 22 22 C 1.38214 * 119.98743 * 359.97438 * 21 19 18 23 23 H 1.09001 * 109.46863 * 299.99939 * 1 2 3 24 24 H 1.08996 * 109.47344 * 59.99864 * 1 2 3 25 25 H 1.09006 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46863 * 240.00061 * 2 1 3 27 27 H 1.09004 * 109.47053 * 120.00302 * 2 1 3 28 28 H 1.09004 * 109.46974 * 29.99659 * 4 3 2 29 29 H 1.08998 * 109.47423 * 149.99953 * 4 3 2 30 30 H 0.96999 * 120.00110 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46978 * 60.00374 * 15 13 3 32 32 H 1.09000 * 109.46976 * 299.99619 * 15 13 3 33 33 H 1.08005 * 119.99688 * 0.02562 * 17 16 15 34 34 H 1.08006 * 120.00561 * 180.23621 * 18 17 16 35 35 H 1.08004 * 120.00190 * 179.97438 * 21 19 18 36 36 H 1.08005 * 119.99333 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8349 -1.7037 6 1 4.3426 1.2301 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6175 9 14 5.9133 2.0963 -3.4171 10 1 6.6007 1.2402 -2.4171 11 1 5.9203 1.4182 -4.7382 12 1 6.6215 3.3971 -3.5247 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1600 1.1672 15 6 1.9923 1.3058 2.4723 16 6 2.3193 2.2289 3.6178 17 6 3.5964 2.2490 4.1462 18 6 3.8980 3.0989 5.1937 19 6 2.9188 3.9220 5.7200 20 35 3.3286 5.0794 7.1582 21 6 1.6395 3.8978 5.1943 22 6 1.3404 3.0517 4.1432 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5816 1.6876 -2.0283 29 1 2.0956 3.1410 -1.1384 30 1 3.6754 3.5170 -4.4434 31 1 2.6229 0.4186 2.5298 32 1 0.9444 1.0114 2.5302 33 1 4.3599 1.6033 3.7378 34 1 4.8969 3.1172 5.6040 35 1 0.8745 4.5400 5.6053 36 1 0.3415 3.0324 3.7329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454266.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:50 Heat of formation + Delta-G solvation = -35.313097 kcal Electronic energy + Delta-G solvation = -19250.555178 eV Core-core repulsion = 16165.807353 eV Total energy + Delta-G solvation = -3084.747824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07180 -39.79565 -36.91377 -34.98980 -34.26311 -32.01862 -31.80054 -31.40239 -29.40980 -27.66929 -24.89060 -24.09538 -23.80237 -22.29517 -19.87870 -18.61883 -17.90124 -17.71300 -17.03566 -16.73851 -16.28740 -15.90088 -15.64542 -14.74039 -14.57039 -14.48344 -14.34718 -14.15360 -13.90182 -13.57432 -13.28080 -13.11651 -12.90535 -12.68772 -12.50756 -12.20301 -12.13814 -12.09704 -11.79676 -11.75153 -11.66919 -11.27218 -10.64875 -10.60969 -9.96934 -9.52958 -9.40340 -8.22132 -6.36800 0.08042 0.36649 0.62505 1.35839 1.38443 1.49901 1.88439 2.29101 2.42023 2.75510 3.07577 3.67835 3.77946 3.91357 3.97032 4.18888 4.25054 4.38560 4.46947 4.57160 4.59448 4.70751 4.77782 4.98331 5.00858 5.03312 5.08806 5.20570 5.21511 5.26213 5.43900 5.55904 5.59800 5.85122 5.88504 6.07705 6.71724 6.84529 7.29626 7.53355 8.84984 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.003072 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.405181 B = 9112.425235 C =10160.944065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.498 3.502 14 O -0.593 6.593 15 C -0.092 4.092 16 C -0.056 4.056 17 C -0.113 4.113 18 C -0.097 4.097 19 C -0.106 4.106 20 Br -0.051 7.051 21 C -0.096 4.096 22 C -0.109 4.109 23 H 0.064 0.936 24 H 0.035 0.965 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.020 0.980 29 H -0.006 1.006 30 H 0.266 0.734 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -5.475 21.859 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.288 3.712 14 O -0.474 6.474 15 C -0.132 4.132 16 C -0.057 4.057 17 C -0.131 4.131 18 C -0.117 4.117 19 C -0.185 4.185 20 Br 0.035 6.965 21 C -0.116 4.116 22 C -0.128 4.128 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.038 0.962 29 H 0.012 0.988 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.276 -4.375 22.218 23.045 hybrid contribution 0.794 0.188 -1.243 1.487 sum -3.482 -4.187 20.975 21.670 Atomic orbital electron populations 1.22167 0.94618 1.03516 1.01733 1.21782 0.95296 0.81254 1.04099 1.48289 1.63936 1.15165 1.06106 1.18662 0.95178 0.91418 0.80613 1.21763 0.97944 1.31747 1.06438 0.92720 1.25864 1.02331 0.94536 0.96528 1.70059 1.37698 1.34355 1.14837 0.85383 0.79107 0.77955 0.78462 1.18917 1.19431 1.20984 1.21181 0.77270 0.86522 0.86275 1.90672 1.47905 1.20784 1.88082 1.20827 1.06592 0.98285 0.87449 1.19711 0.94193 0.96836 0.94922 1.21252 0.96391 0.99517 0.95980 1.21250 0.99250 0.94855 0.96339 1.21914 0.97224 1.00638 0.98707 1.96665 1.94770 1.62651 1.42456 1.21276 0.95280 0.98754 0.96274 1.21257 1.00399 0.95309 0.95861 0.91719 0.94619 0.88643 0.91233 0.87620 0.96203 0.98819 0.92488 0.85469 0.84972 0.84427 0.83789 0.83489 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.92 16 2 C 0.10 2.75 5.93 86.38 0.51 3.26 16 3 N -0.60 -24.57 2.46 -826.18 -2.03 -26.60 16 4 C 0.26 14.12 5.16 85.63 0.44 14.56 16 5 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 C 0.50 19.70 7.67 87.66 0.67 20.37 16 14 O -0.59 -30.34 15.61 -3.03 -0.05 -30.39 16 15 C -0.09 -2.30 4.38 29.10 0.13 -2.18 16 16 C -0.06 -1.49 4.37 -19.86 -0.09 -1.58 16 17 C -0.11 -2.95 9.70 22.26 0.22 -2.73 16 18 C -0.10 -2.40 9.79 22.29 0.22 -2.18 16 19 C -0.11 -2.59 6.22 22.31 0.14 -2.45 16 20 Br -0.05 -1.08 33.70 -20.37 -0.69 -1.76 16 21 C -0.10 -2.28 9.79 22.29 0.22 -2.06 16 22 C -0.11 -2.72 9.70 22.26 0.22 -2.50 16 23 H 0.06 1.28 7.22 -2.39 -0.02 1.27 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 27 H 0.11 2.12 6.44 -2.39 -0.02 2.11 16 28 H 0.02 1.09 8.07 -2.38 -0.02 1.07 16 29 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 30 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.13 2.47 7.34 -2.39 -0.02 2.45 16 32 H 0.13 2.40 7.13 -2.39 -0.02 2.38 16 33 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 34 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 35 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -75.07 330.05 4.73 -70.34 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.07 Total: 8.12 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 4.11 Total: -10.41 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -1.74 Total: -82.90 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.05 Total: -30.39 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 35 Polarization: -1.08 SS G_CDS: -0.69 Total: -1.76 kcal Total: -75.07 4.73 -70.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454266.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.025 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds