Wall clock time and date at job start Tue Mar 31 2020 14:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47333 * 2 1 4 4 N 1.46494 * 109.47330 * 184.80241 * 3 2 1 5 5 C 1.37107 * 119.99804 * 90.87271 * 4 3 2 6 6 H 1.08003 * 120.00001 * 311.91298 * 5 4 3 7 7 C 1.38947 * 119.99471 * 131.91146 * 5 4 3 8 8 N 1.31420 * 119.99622 * 167.34306 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 347.33633 * 7 5 4 10 10 H 1.48508 * 109.46914 * 94.27275 * 9 7 5 11 11 H 1.48495 * 109.47631 * 214.27337 * 9 7 5 12 12 H 1.48502 * 109.47425 * 334.27869 * 9 7 5 13 13 C 1.34771 * 120.00381 * 271.15350 * 4 3 2 14 14 O 1.21296 * 120.00505 * 179.72769 * 13 4 3 15 15 C 1.50705 * 119.99677 * 359.72203 * 13 4 3 16 16 C 1.50706 * 109.46759 * 180.02562 * 15 13 4 17 17 C 1.38266 * 119.99339 * 269.72505 * 16 15 13 18 18 C 1.38217 * 120.02098 * 179.73237 * 17 16 15 19 19 C 1.38247 * 120.00596 * 0.54176 * 18 17 16 20 20 C 1.38297 * 119.99266 * 359.73196 * 19 18 17 21 21 Br 1.89099 * 120.01301 * 180.02562 * 20 19 18 22 22 C 1.38202 * 119.99735 * 90.00201 * 16 15 13 23 23 H 1.09002 * 109.47022 * 184.83927 * 1 2 3 24 24 H 1.08995 * 109.47324 * 304.83919 * 1 2 3 25 25 H 1.08998 * 109.47086 * 64.83770 * 1 2 3 26 26 H 1.09007 * 109.47398 * 240.00251 * 2 1 3 27 27 H 1.08997 * 109.47457 * 120.00315 * 2 1 3 28 28 H 1.09003 * 109.46561 * 64.80184 * 3 2 1 29 29 H 1.08997 * 109.46928 * 304.80645 * 3 2 1 30 30 H 0.97002 * 119.99866 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47280 * 299.99665 * 15 13 4 32 32 H 1.08994 * 109.47218 * 60.00278 * 15 13 4 33 33 H 1.08001 * 119.98677 * 0.02562 * 17 16 15 34 34 H 1.07994 * 119.99606 * 180.27417 * 18 17 16 35 35 H 1.07999 * 120.00230 * 179.75485 * 19 18 17 36 36 H 1.07997 * 120.00369 * 359.97373 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5004 1.4441 -0.1156 5 6 4.0901 1.4961 -1.3523 6 1 3.7566 0.8341 -2.1378 7 6 5.1166 2.4006 -1.5950 8 7 5.8470 2.2893 -2.6818 9 14 5.4582 3.7746 -0.3766 10 1 6.5184 3.3444 0.5701 11 1 5.9101 4.9848 -1.1091 12 1 4.2180 4.0870 0.3779 13 6 4.2643 1.3888 0.9933 14 8 5.4734 1.3852 0.8974 15 6 3.6161 1.3316 2.3526 16 6 4.6829 1.2770 3.4158 17 6 5.1605 0.0555 3.8536 18 6 6.1428 0.0049 4.8247 19 6 6.6401 1.1754 5.3667 20 6 6.1586 2.3972 4.9332 21 35 6.8390 3.9987 5.6737 22 6 5.1794 2.4476 3.9572 23 1 -0.3633 -1.0240 0.0867 24 1 -0.3634 0.5870 0.8434 25 1 -0.3633 0.4369 -0.9301 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7486 1.9308 0.9299 29 1 1.6081 1.9806 -0.8438 30 1 6.5634 2.9210 -2.8514 31 1 3.0020 2.2200 2.5000 32 1 2.9901 0.4419 2.4195 33 1 4.7693 -0.8591 3.4332 34 1 6.5187 -0.9493 5.1631 35 1 7.4048 1.1356 6.1283 36 1 4.8034 3.4015 3.6181 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050040862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:03 Heat of formation + Delta-G solvation = -6.671533 kcal Electronic energy + Delta-G solvation = -19877.738354 eV Core-core repulsion = 16794.232522 eV Total energy + Delta-G solvation = -3083.505833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67946 -38.46730 -35.35953 -33.23457 -32.57050 -31.85152 -31.43584 -29.25803 -27.75683 -25.98392 -24.02559 -22.37969 -21.60243 -21.05610 -19.23138 -17.18109 -16.67491 -15.82568 -15.61970 -15.26543 -14.85900 -14.37832 -13.97498 -13.57317 -13.39440 -13.21740 -12.97559 -12.76245 -12.60030 -12.22688 -11.85877 -11.70890 -11.44840 -11.16338 -11.04240 -10.96814 -10.72522 -10.70553 -10.25896 -10.23447 -10.10001 -9.93533 -8.83793 -8.62952 -8.59271 -8.36824 -7.54537 -6.17927 -4.02700 1.24518 1.41718 1.68815 3.29991 3.41825 3.64896 3.70463 3.82983 4.47977 4.54311 4.82315 4.92074 5.13331 5.18358 5.29644 5.34390 5.40337 5.42571 5.53453 5.57083 5.76030 5.79656 5.83111 5.94727 6.06534 6.09417 6.19019 6.26504 6.27977 6.41520 6.52892 6.67269 6.71585 6.93150 7.86446 8.03125 8.77084 8.92438 9.42032 9.80722 10.88004 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.004779 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.205345 B = 5857.464446 C = 6907.673594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.103 3.897 4 N -0.468 5.468 5 C -0.343 4.343 6 H 0.092 0.908 7 C 0.089 3.911 8 N -0.873 5.873 9 Si 0.908 3.092 10 H -0.255 1.255 11 H -0.307 1.307 12 H -0.281 1.281 13 C 0.456 3.544 14 O -0.536 6.536 15 C -0.106 4.106 16 C -0.041 4.041 17 C -0.089 4.089 18 C -0.113 4.113 19 C -0.100 4.100 20 C -0.086 4.086 21 Br -0.063 7.063 22 C -0.080 4.080 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.272 0.728 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 -0.901 17.451 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.021 4.021 4 N -0.190 5.190 5 C -0.469 4.469 6 H 0.110 0.890 7 C -0.119 4.119 8 N -0.508 5.508 9 Si 0.739 3.261 10 H -0.181 1.181 11 H -0.236 1.236 12 H -0.207 1.207 13 C 0.245 3.755 14 O -0.417 6.417 15 C -0.146 4.146 16 C -0.042 4.042 17 C -0.108 4.108 18 C -0.132 4.132 19 C -0.120 4.120 20 C -0.165 4.165 21 Br 0.022 6.978 22 C -0.100 4.100 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.051 -0.235 17.531 17.994 hybrid contribution 0.029 0.380 0.213 0.436 sum -4.022 0.145 17.744 18.194 Atomic orbital electron populations 1.21711 0.96079 1.01123 1.01624 1.21931 0.95011 0.98393 1.02482 1.21689 0.83368 0.95716 1.01317 1.43654 1.03608 1.66152 1.05628 1.18762 1.19317 1.21115 0.87675 0.89020 1.25355 0.94414 0.96863 0.95288 1.69710 1.18208 1.36050 1.26827 0.86356 0.79689 0.78770 0.81307 1.18081 1.23617 1.20678 1.20284 0.88133 0.81718 0.85354 1.90569 1.13754 1.51299 1.86088 1.20833 0.96864 1.04175 0.92777 1.19441 0.97030 0.92713 0.95058 1.21129 0.96250 0.97538 0.95838 1.21063 0.97104 0.97786 0.97264 1.20989 0.99823 0.90896 1.00297 1.21633 1.01560 0.91592 1.01763 1.96649 1.86303 1.31299 1.83533 1.20937 0.95531 0.98875 0.94688 0.93117 0.93027 0.92676 0.91199 0.92570 0.92613 0.90516 0.91864 0.89149 0.88535 0.85478 0.85282 0.85402 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.14 -2.07 6.25 -26.73 -0.17 -2.24 16 3 C 0.10 1.81 5.16 -4.04 -0.02 1.79 16 4 N -0.47 -10.87 2.09 -114.81 -0.24 -11.11 16 5 C -0.34 -9.57 9.62 -14.93 -0.14 -9.72 16 6 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 7 C 0.09 2.64 5.01 -17.47 -0.09 2.55 16 8 N -0.87 -26.91 13.96 55.50 0.77 -26.14 16 9 Si 0.91 24.50 24.69 -169.99 -4.20 20.30 16 10 H -0.26 -7.31 6.48 56.52 0.37 -6.94 16 11 H -0.31 -8.16 7.11 56.52 0.40 -7.75 16 12 H -0.28 -7.13 7.09 56.52 0.40 -6.73 16 13 C 0.46 10.47 5.79 -10.99 -0.06 10.41 16 14 O -0.54 -14.68 11.96 5.54 0.07 -14.61 16 15 C -0.11 -1.79 4.39 -29.03 -0.13 -1.92 16 16 C -0.04 -0.69 4.37 -104.62 -0.46 -1.15 16 17 C -0.09 -1.33 9.70 -39.58 -0.38 -1.71 16 18 C -0.11 -1.49 10.05 -39.59 -0.40 -1.89 16 19 C -0.10 -1.37 9.79 -39.56 -0.39 -1.75 16 20 C -0.09 -1.33 6.22 -39.52 -0.25 -1.57 16 21 Br -0.06 -0.87 33.70 -68.01 -2.29 -3.16 16 22 C -0.08 -1.36 9.44 -39.55 -0.37 -1.73 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.79 7.05 -51.93 -0.37 0.42 16 28 H 0.06 0.83 6.49 -51.93 -0.34 0.49 16 29 H 0.08 1.35 8.03 -51.93 -0.42 0.94 16 30 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 31 H 0.09 1.36 7.35 -51.93 -0.38 0.98 16 32 H 0.10 1.35 6.95 -51.93 -0.36 0.99 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -33.54 319.85 -8.40 -41.94 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.84 Total: -1.78 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.49 Total: -10.26 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.53 Total: -37.25 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.07 Total: -14.61 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.20 Total: 20.30 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -2.29 Total: -3.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.54 -8.40 -41.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050040862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.267 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds