Wall clock time and date at job start Tue Mar 31 2020 14:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38241 * 119.98854 * 269.72698 * 17 16 14 19 19 C 1.38228 * 120.00893 * 179.76886 * 18 17 16 20 20 C 1.38322 * 119.98692 * 0.50342 * 19 18 17 21 21 Br 1.89105 * 120.00815 * 179.72709 * 20 19 18 22 22 C 1.38323 * 119.98268 * 359.74557 * 20 19 18 23 23 C 1.38222 * 119.99094 * 0.02562 * 22 20 19 24 24 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 31 31 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 32 32 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 33 33 H 1.07999 * 119.99623 * 0.02562 * 18 17 16 34 34 H 1.08003 * 120.00251 * 180.23452 * 19 18 17 35 35 H 1.08004 * 120.00681 * 179.97438 * 22 20 19 36 36 H 1.07997 * 119.99725 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4455 3.1029 -2.8737 19 6 -3.7282 3.6028 -2.7490 20 6 -3.9262 4.8902 -2.2835 21 35 -5.6804 5.5774 -2.1200 22 6 -2.8408 5.6750 -1.9380 23 6 -1.5588 5.1726 -2.0586 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0608 2.9500 30 1 2.2720 2.1231 -1.9978 31 1 0.7280 4.1540 -2.8668 32 1 0.0680 2.6143 -3.4687 33 1 -2.2906 2.0991 -3.2409 34 1 -4.5753 2.9897 -3.0191 35 1 -2.9950 6.6804 -1.5749 36 1 -0.7112 5.7854 -1.7893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:13 Heat of formation + Delta-G solvation = -24.325625 kcal Electronic energy + Delta-G solvation = -19261.832041 eV Core-core repulsion = 16177.560670 eV Total energy + Delta-G solvation = -3084.271372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78013 -38.52264 -35.12537 -33.28021 -32.38258 -31.13881 -31.08397 -30.32002 -27.53071 -26.27940 -23.08181 -22.86850 -21.63481 -20.15536 -19.32189 -17.21915 -16.60763 -15.81454 -15.68539 -15.33423 -15.02589 -14.46605 -14.20534 -13.55679 -13.35987 -13.17756 -12.81687 -12.66847 -12.52277 -11.74742 -11.43652 -11.32982 -11.21063 -11.12454 -10.96852 -10.85521 -10.82403 -10.38456 -10.33601 -10.18522 -9.64263 -9.12044 -9.04266 -9.02858 -8.55081 -8.49052 -7.83457 -6.14212 -4.23836 1.05940 1.30863 1.55131 3.22628 3.29547 3.30907 3.38447 3.53490 4.18224 4.40316 4.70219 4.73206 4.85861 5.16909 5.21277 5.30564 5.50379 5.55710 5.57679 5.76850 5.92628 6.15453 6.18054 6.37682 6.44100 6.53113 6.64636 6.78681 7.01939 7.18659 7.35528 7.44343 7.60228 7.71760 7.88609 8.16712 8.65330 8.76142 9.12824 9.43846 10.91023 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.002526 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.180675 B =11083.522548 C =11242.181701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.501 3.499 15 O -0.540 6.540 16 C -0.112 4.112 17 C -0.034 4.034 18 C -0.101 4.101 19 C -0.090 4.090 20 C -0.095 4.095 21 Br -0.063 7.063 22 C -0.090 4.090 23 C -0.100 4.100 24 H 0.022 0.978 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.030 0.970 28 H 0.098 0.902 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 9.086 -12.533 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.418 6.418 16 C -0.153 4.153 17 C -0.035 4.035 18 C -0.120 4.120 19 C -0.110 4.110 20 C -0.174 4.174 21 Br 0.022 6.978 22 C -0.110 4.110 23 C -0.119 4.119 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.160 9.203 -11.584 21.183 hybrid contribution 1.710 -0.240 -0.203 1.739 sum -13.450 8.964 -11.787 20.004 Atomic orbital electron populations 1.21832 0.98340 0.97965 1.01216 1.21932 0.92591 0.99868 1.02234 1.18767 0.94127 0.89145 0.81035 0.93382 1.21234 0.90757 1.39050 1.06276 0.92116 1.24894 0.98587 0.94811 0.95414 1.69900 1.35125 1.37566 1.09315 0.86464 0.84885 0.77658 0.78183 1.20580 1.21075 1.19858 1.46502 1.14579 1.56112 1.18567 1.20144 0.82909 0.79650 0.88732 1.90707 1.51268 1.59489 1.40384 1.20830 0.94217 1.01750 0.98472 1.19511 0.94477 0.93605 0.95935 1.21006 0.91459 0.99570 0.99936 1.21017 0.97763 0.93613 0.98570 1.21688 0.90587 0.97186 1.07947 1.96667 1.17283 1.86495 1.97371 1.21023 0.91420 0.99657 0.98862 1.21018 0.96680 0.95531 0.98702 0.95933 0.93203 0.94303 0.95080 0.88347 0.92558 0.77991 0.88233 0.88326 0.85288 0.85233 0.85216 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.47 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.79 8.73 -34.44 -0.30 -14.09 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.45 11.30 55.43 0.63 -23.82 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.71 -13.82 5.02 -54.93 -0.28 -14.10 16 14 C 0.50 9.16 6.39 -10.98 -0.07 9.09 16 15 O -0.54 -12.04 13.17 5.56 0.07 -11.97 16 16 C -0.11 -1.43 5.83 -29.04 -0.17 -1.60 16 17 C -0.03 -0.46 4.37 -104.62 -0.46 -0.92 16 18 C -0.10 -1.27 9.70 -39.58 -0.38 -1.66 16 19 C -0.09 -1.09 9.79 -39.55 -0.39 -1.47 16 20 C -0.09 -1.17 6.22 -39.52 -0.25 -1.41 16 21 Br -0.06 -0.69 33.70 -68.01 -2.29 -2.98 16 22 C -0.09 -1.09 9.79 -39.56 -0.39 -1.48 16 23 C -0.10 -1.28 9.70 -39.59 -0.38 -1.66 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 26 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.45 8.54 -40.82 -0.35 6.10 16 31 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 32 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -29.85 322.36 -9.57 -39.42 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.67 Total: 6.26 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.86 Total: -12.95 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.35 Total: -37.92 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.85 -9.57 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.090 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds