Wall clock time and date at job start Tue Mar 31 2020 14:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38241 * 119.98854 * 269.72698 * 17 16 14 19 19 C 1.38228 * 120.00893 * 179.76886 * 18 17 16 20 20 C 1.38322 * 119.98692 * 0.50342 * 19 18 17 21 21 Br 1.89105 * 120.00815 * 179.72709 * 20 19 18 22 22 C 1.38323 * 119.98268 * 359.74557 * 20 19 18 23 23 C 1.38222 * 119.99094 * 0.02562 * 22 20 19 24 24 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 31 31 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 32 32 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 33 33 H 1.07999 * 119.99623 * 0.02562 * 18 17 16 34 34 H 1.08003 * 120.00251 * 180.23452 * 19 18 17 35 35 H 1.08004 * 120.00681 * 179.97438 * 22 20 19 36 36 H 1.07997 * 119.99725 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4455 3.1029 -2.8737 19 6 -3.7282 3.6028 -2.7490 20 6 -3.9262 4.8902 -2.2835 21 35 -5.6804 5.5774 -2.1200 22 6 -2.8408 5.6750 -1.9380 23 6 -1.5588 5.1726 -2.0586 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0608 2.9500 30 1 2.2720 2.1231 -1.9978 31 1 0.7280 4.1540 -2.8668 32 1 0.0680 2.6143 -3.4687 33 1 -2.2906 2.0991 -3.2409 34 1 -4.5753 2.9897 -3.0191 35 1 -2.9950 6.6804 -1.5749 36 1 -0.7112 5.7854 -1.7893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:13 Heat of formation + Delta-G solvation = -41.211621 kcal Electronic energy + Delta-G solvation = -19262.564273 eV Core-core repulsion = 16177.560670 eV Total energy + Delta-G solvation = -3085.003603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99966 -39.79021 -36.89989 -34.37571 -34.19416 -32.79536 -32.00060 -31.42340 -29.15629 -27.64073 -24.95102 -23.79185 -22.85388 -21.68850 -20.97904 -18.89102 -17.66606 -17.37952 -17.05084 -16.77437 -16.18881 -15.96738 -15.72554 -14.78109 -14.60800 -14.45556 -14.20013 -13.94348 -13.86123 -13.49869 -13.15813 -12.89952 -12.79606 -12.66462 -12.21428 -12.14798 -12.08225 -11.98260 -11.74105 -11.55280 -11.26258 -11.02599 -10.63668 -10.47569 -9.95436 -9.55620 -9.51323 -8.14319 -6.31430 0.10003 0.38167 0.64011 1.45648 1.46066 1.56431 1.95926 2.36571 2.52496 2.96175 3.15482 3.72006 3.80445 3.98525 4.26193 4.29728 4.40394 4.51451 4.60044 4.62289 4.65486 4.77746 4.83829 5.02546 5.09453 5.23098 5.23373 5.29832 5.46878 5.57963 5.59417 5.67944 5.83368 5.87229 5.97955 6.20655 6.78297 7.08287 7.36727 7.69212 8.90758 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.002526 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.180675 B =11083.522548 C =11242.181701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.707 5.707 14 C 0.498 3.502 15 O -0.584 6.584 16 C -0.097 4.097 17 C -0.052 4.052 18 C -0.109 4.109 19 C -0.097 4.097 20 C -0.106 4.106 21 Br -0.053 7.053 22 C -0.098 4.098 23 C -0.112 4.112 24 H 0.042 0.958 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.263 0.737 30 H 0.405 0.595 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 9.453 -14.539 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.357 5.357 14 C 0.286 3.714 15 O -0.465 6.465 16 C -0.137 4.137 17 C -0.053 4.053 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.185 4.185 21 Br 0.033 6.967 22 C -0.118 4.118 23 C -0.131 4.131 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.240 0.760 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.701 9.588 -13.642 22.230 hybrid contribution 1.473 -0.308 0.436 1.566 sum -13.229 9.280 -13.206 20.869 Atomic orbital electron populations 1.21662 0.96972 0.98944 1.00288 1.21778 0.93714 0.99338 1.01176 1.18294 0.93402 0.89070 0.81652 0.98727 1.21616 0.91624 1.38629 1.06561 0.90904 1.25773 1.03166 0.94516 0.95159 1.70062 1.36997 1.38522 1.09877 0.85406 0.79362 0.77300 0.78629 1.20552 1.21201 1.18299 1.46258 1.15755 1.56234 1.17442 1.21079 0.81621 0.78587 0.90148 1.90695 1.52353 1.60868 1.42573 1.20785 0.94464 1.02804 0.95627 1.19675 0.94869 0.94024 0.96765 1.21259 0.91563 1.00168 0.99833 1.21268 0.98283 0.93801 0.98327 1.21907 0.91289 0.97500 1.07810 1.96669 1.16366 1.86359 1.97337 1.21254 0.91348 1.00415 0.98746 1.21257 0.97343 0.95823 0.98629 0.93871 0.96002 0.93272 0.93941 0.91393 0.92736 0.76036 0.85474 0.85194 0.83951 0.83704 0.83838 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.74 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.67 16 3 C 0.28 13.87 2.24 44.25 0.10 13.97 16 4 H -0.01 -0.31 7.58 -2.39 -0.02 -0.33 16 5 C -0.55 -28.11 8.73 25.60 0.22 -27.88 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -52.10 11.30 21.45 0.24 -51.86 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 13 N -0.71 -26.88 5.02 -446.09 -2.24 -29.12 16 14 C 0.50 17.67 6.39 87.66 0.56 18.23 16 15 O -0.58 -26.22 13.17 -3.02 -0.04 -26.26 16 16 C -0.10 -2.21 5.83 29.10 0.17 -2.04 16 17 C -0.05 -1.30 4.37 -19.86 -0.09 -1.38 16 18 C -0.11 -2.57 9.70 22.27 0.22 -2.36 16 19 C -0.10 -2.21 9.79 22.29 0.22 -1.99 16 20 C -0.11 -2.47 6.22 22.31 0.14 -2.33 16 21 Br -0.05 -1.08 33.70 -20.37 -0.69 -1.76 16 22 C -0.10 -2.27 9.79 22.29 0.22 -2.05 16 23 C -0.11 -2.70 9.70 22.27 0.22 -2.48 16 24 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.02 1.04 7.85 -2.39 -0.02 1.03 16 26 H 0.05 2.04 5.64 -2.39 -0.01 2.02 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 3.72 5.95 -2.39 -0.01 3.70 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.40 12.59 8.54 -92.71 -0.79 11.80 16 31 H 0.13 2.22 8.09 -2.39 -0.02 2.20 16 32 H 0.13 2.18 8.08 -2.39 -0.02 2.16 16 33 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 35 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -65.98 322.36 2.80 -63.18 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.30 Total: 21.93 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 3.20 Total: -19.56 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -2.00 Total: -80.97 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 35 Polarization: -1.08 SS G_CDS: -0.69 Total: -1.76 kcal Total: -65.98 2.80 -63.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.968 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds