Wall clock time and date at job start Tue Mar 31 2020 14:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 H 1.08995 * 109.47219 * 305.69625 * 3 2 1 5 5 C 1.50700 * 109.47188 * 185.69347 * 3 2 1 6 6 H 1.08004 * 119.99872 * 275.00045 * 5 3 2 7 7 C 1.37874 * 120.00023 * 95.00844 * 5 3 2 8 8 N 1.31515 * 119.99837 * 184.83142 * 7 5 3 9 9 Si 1.86792 * 120.00008 * 4.82352 * 7 5 3 10 10 H 1.48499 * 109.46984 * 84.86642 * 9 7 5 11 11 H 1.48503 * 109.47341 * 204.86456 * 9 7 5 12 12 H 1.48494 * 109.47335 * 324.86711 * 9 7 5 13 13 N 1.46506 * 109.47050 * 65.69313 * 3 2 1 14 14 C 1.34773 * 119.99924 * 275.00465 * 13 3 2 15 15 O 1.21283 * 120.00248 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00085 * 179.97438 * 14 13 3 17 17 C 1.50693 * 109.46967 * 179.97438 * 16 14 13 18 18 C 1.38273 * 119.99432 * 269.72217 * 17 16 14 19 19 C 1.38214 * 120.01836 * 179.72928 * 18 17 16 20 20 C 1.38239 * 120.01166 * 0.54820 * 19 18 17 21 21 C 1.38302 * 119.99219 * 359.72890 * 20 19 18 22 22 Br 1.89097 * 120.01382 * 180.02562 * 21 20 19 23 23 C 1.38198 * 119.99959 * 90.00411 * 17 16 14 24 24 H 1.09001 * 109.47136 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.46709 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47041 * 299.99936 * 1 2 3 27 27 H 1.09000 * 109.47706 * 240.00372 * 2 1 3 28 28 H 1.09007 * 109.47543 * 120.00131 * 2 1 3 29 29 H 0.96996 * 120.00005 * 179.97438 * 8 7 5 30 30 H 0.96996 * 120.00045 * 94.99448 * 13 3 2 31 31 H 1.08999 * 109.46985 * 59.99381 * 16 14 13 32 32 H 1.08997 * 109.47097 * 299.99869 * 16 14 13 33 33 H 1.07998 * 119.98467 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.99677 * 180.27448 * 19 18 17 35 35 H 1.08003 * 120.00905 * 179.70477 * 20 19 18 36 36 H 1.08000 * 119.99613 * 359.97107 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9850 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1650 1.3334 0.7330 7 6 4.1156 1.5895 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9172 -2.8784 10 1 2.7754 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6667 2.0925 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3342 2.6308 0.4661 16 6 0.0666 3.3268 2.6852 17 6 -1.3322 3.8758 2.5716 18 6 -1.5334 5.1671 2.1202 19 6 -2.8165 5.6692 2.0104 20 6 -3.8985 4.8843 2.3626 21 6 -3.6975 3.5946 2.8196 22 35 -5.1773 2.5202 3.3009 23 6 -2.4134 3.0905 2.9240 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.8251 1.5979 -2.3974 30 1 2.2946 2.1151 1.9978 31 1 0.7604 4.1412 2.8937 32 1 0.1069 2.5989 3.4955 33 1 -0.6879 5.7822 1.8496 34 1 -2.9735 6.6764 1.6536 35 1 -4.9009 5.2784 2.2814 36 1 -2.2558 2.0832 3.2804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:24 Heat of formation + Delta-G solvation = -24.797631 kcal Electronic energy + Delta-G solvation = -19433.341549 eV Core-core repulsion = 16349.049710 eV Total energy + Delta-G solvation = -3084.291839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86415 -38.64120 -35.24818 -33.16902 -32.37752 -32.07439 -31.37191 -29.41404 -28.12737 -26.89416 -22.92394 -22.55752 -21.86360 -20.21712 -19.54013 -17.40912 -16.85990 -15.96268 -15.81909 -15.63581 -15.01154 -14.52056 -14.13268 -13.58266 -13.45711 -13.29147 -12.89667 -12.80857 -12.66930 -11.95732 -11.91212 -11.65028 -11.37936 -11.15522 -10.96381 -10.91344 -10.68913 -10.66549 -10.39787 -10.00828 -9.86201 -9.29970 -9.19138 -8.89474 -8.73812 -8.66153 -8.01428 -6.26089 -4.29722 1.04960 1.21491 1.52379 3.23029 3.27945 3.32616 3.40366 3.48206 4.12301 4.30552 4.57630 4.72322 4.94320 5.10177 5.18717 5.19773 5.34493 5.49155 5.53402 5.71726 5.85517 6.04591 6.08054 6.08969 6.23239 6.24840 6.44497 6.63643 6.73138 6.78170 6.96834 6.99800 7.27671 7.34638 7.55952 8.11807 8.55570 8.74795 8.98173 9.36382 10.85615 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.003226 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.112178 B = 8677.084690 C = 9069.283789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.704 5.704 14 C 0.501 3.499 15 O -0.545 6.545 16 C -0.110 4.110 17 C -0.047 4.047 18 C -0.090 4.090 19 C -0.113 4.113 20 C -0.098 4.098 21 C -0.088 4.088 22 Br -0.060 7.060 23 C -0.077 4.077 24 H 0.049 0.951 25 H 0.029 0.971 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.268 0.732 30 H 0.393 0.607 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 5.738 12.041 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.068 0.932 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.352 5.352 14 C 0.285 3.715 15 O -0.423 6.423 16 C -0.150 4.150 17 C -0.048 4.048 18 C -0.108 4.108 19 C -0.132 4.132 20 C -0.118 4.118 21 C -0.167 4.167 22 Br 0.025 6.975 23 C -0.097 4.097 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.226 0.774 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.337 5.294 11.400 23.063 hybrid contribution 0.271 0.380 -0.649 0.799 sum -19.066 5.674 10.751 22.612 Atomic orbital electron populations 1.21894 0.97379 0.98805 1.02032 1.22074 0.93661 0.99490 1.01180 1.19158 0.95422 0.89077 0.82868 0.93165 1.21020 0.88728 1.51730 0.95442 0.90364 1.24933 0.94856 0.93679 0.98801 1.69881 1.09771 1.48329 1.24515 0.86910 0.81292 0.79608 0.82242 1.19908 1.21208 1.18349 1.46607 1.14386 1.56011 1.18237 1.20281 0.82839 0.79476 0.88872 1.90693 1.50727 1.59647 1.41281 1.20789 0.94106 1.01898 0.98187 1.19352 0.94032 0.93723 0.97695 1.21174 0.97487 0.95173 0.97001 1.21089 0.92107 1.00010 0.99994 1.21037 0.99737 0.92384 0.98611 1.21668 0.92297 0.95656 1.07072 1.96682 1.40523 1.68597 1.91667 1.20924 0.90339 0.99601 0.98826 0.93158 0.95156 0.93173 0.92166 0.93045 0.92229 0.77392 0.87954 0.88221 0.85418 0.85230 0.85339 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.53 37.16 0.32 -2.54 16 2 C -0.12 -2.67 5.59 -26.73 -0.15 -2.82 16 3 C 0.24 5.45 1.89 -69.08 -0.13 5.32 16 4 H 0.05 1.28 4.73 -51.93 -0.25 1.03 16 5 C -0.53 -13.94 9.05 -34.44 -0.31 -14.25 16 6 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -25.85 13.96 55.43 0.77 -25.07 16 9 Si 0.87 21.39 26.99 -169.99 -4.59 16.80 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.26 -6.28 6.82 56.52 0.39 -5.90 16 13 N -0.70 -13.26 5.03 -54.93 -0.28 -13.54 16 14 C 0.50 8.83 6.42 -10.99 -0.07 8.75 16 15 O -0.54 -11.59 13.18 5.56 0.07 -11.52 16 16 C -0.11 -1.37 5.83 -29.04 -0.17 -1.54 16 17 C -0.05 -0.61 4.37 -104.63 -0.46 -1.07 16 18 C -0.09 -1.09 9.70 -39.58 -0.38 -1.48 16 19 C -0.11 -1.23 10.05 -39.59 -0.40 -1.63 16 20 C -0.10 -1.09 9.79 -39.56 -0.39 -1.48 16 21 C -0.09 -1.08 6.22 -39.52 -0.25 -1.33 16 22 Br -0.06 -0.67 33.70 -68.01 -2.29 -2.96 16 23 C -0.08 -1.00 9.44 -39.56 -0.37 -1.37 16 24 H 0.05 1.07 7.89 -51.93 -0.41 0.67 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.98 5.63 -51.93 -0.29 0.68 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.39 6.43 8.59 -40.82 -0.35 6.08 16 31 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 32 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -30.85 322.27 -8.98 -39.84 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.67 Total: 4.86 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.86 Total: -13.26 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.50 Total: -38.61 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.59 Total: 16.80 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.29 Total: -2.96 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.85 -8.98 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.038 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds