Wall clock time and date at job start Tue Mar 31 2020 14:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 H 1.08995 * 109.47219 * 305.69625 * 3 2 1 5 5 C 1.50700 * 109.47188 * 185.69347 * 3 2 1 6 6 H 1.08004 * 119.99872 * 275.00045 * 5 3 2 7 7 C 1.37874 * 120.00023 * 95.00844 * 5 3 2 8 8 N 1.31515 * 119.99837 * 184.83142 * 7 5 3 9 9 Si 1.86792 * 120.00008 * 4.82352 * 7 5 3 10 10 H 1.48499 * 109.46984 * 84.86642 * 9 7 5 11 11 H 1.48503 * 109.47341 * 204.86456 * 9 7 5 12 12 H 1.48494 * 109.47335 * 324.86711 * 9 7 5 13 13 N 1.46506 * 109.47050 * 65.69313 * 3 2 1 14 14 C 1.34773 * 119.99924 * 275.00465 * 13 3 2 15 15 O 1.21283 * 120.00248 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00085 * 179.97438 * 14 13 3 17 17 C 1.50693 * 109.46967 * 179.97438 * 16 14 13 18 18 C 1.38273 * 119.99432 * 269.72217 * 17 16 14 19 19 C 1.38214 * 120.01836 * 179.72928 * 18 17 16 20 20 C 1.38239 * 120.01166 * 0.54820 * 19 18 17 21 21 C 1.38302 * 119.99219 * 359.72890 * 20 19 18 22 22 Br 1.89097 * 120.01382 * 180.02562 * 21 20 19 23 23 C 1.38198 * 119.99959 * 90.00411 * 17 16 14 24 24 H 1.09001 * 109.47136 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.46709 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47041 * 299.99936 * 1 2 3 27 27 H 1.09000 * 109.47706 * 240.00372 * 2 1 3 28 28 H 1.09007 * 109.47543 * 120.00131 * 2 1 3 29 29 H 0.96996 * 120.00005 * 179.97438 * 8 7 5 30 30 H 0.96996 * 120.00045 * 94.99448 * 13 3 2 31 31 H 1.08999 * 109.46985 * 59.99381 * 16 14 13 32 32 H 1.08997 * 109.47097 * 299.99869 * 16 14 13 33 33 H 1.07998 * 119.98467 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.99677 * 180.27448 * 19 18 17 35 35 H 1.08003 * 120.00905 * 179.70477 * 20 19 18 36 36 H 1.08000 * 119.99613 * 359.97107 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9850 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1650 1.3334 0.7330 7 6 4.1156 1.5895 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9172 -2.8784 10 1 2.7754 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6667 2.0925 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3342 2.6308 0.4661 16 6 0.0666 3.3268 2.6852 17 6 -1.3322 3.8758 2.5716 18 6 -1.5334 5.1671 2.1202 19 6 -2.8165 5.6692 2.0104 20 6 -3.8985 4.8843 2.3626 21 6 -3.6975 3.5946 2.8196 22 35 -5.1773 2.5202 3.3009 23 6 -2.4134 3.0905 2.9240 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.8251 1.5979 -2.3974 30 1 2.2946 2.1151 1.9978 31 1 0.7604 4.1412 2.8937 32 1 0.1069 2.5989 3.4955 33 1 -0.6879 5.7822 1.8496 34 1 -2.9735 6.6764 1.6536 35 1 -4.9009 5.2784 2.2814 36 1 -2.2558 2.0832 3.2804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:23 Heat of formation + Delta-G solvation = -43.073041 kcal Electronic energy + Delta-G solvation = -19434.134030 eV Core-core repulsion = 16349.049710 eV Total energy + Delta-G solvation = -3085.084321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05351 -39.83053 -36.93688 -34.37651 -34.19869 -33.15205 -32.73991 -30.32860 -29.67221 -28.24193 -24.72328 -23.46845 -23.01122 -21.65066 -21.12882 -19.20997 -17.86074 -17.51731 -17.28158 -16.78584 -16.12688 -15.93067 -15.75077 -14.86045 -14.77644 -14.44435 -14.28881 -14.07826 -13.85839 -13.74940 -13.64424 -12.95343 -12.88760 -12.53612 -12.36865 -12.21246 -12.03467 -11.87553 -11.78638 -11.66754 -11.26856 -11.19059 -10.83306 -10.66783 -9.82262 -9.63788 -9.60430 -8.38639 -6.43631 0.15239 0.32364 0.64051 1.28180 1.33153 1.43828 1.89508 2.26844 2.43640 2.81808 3.08211 3.63428 3.88689 4.10098 4.17270 4.30967 4.33444 4.35218 4.43006 4.50165 4.58024 4.65727 4.83189 4.85200 4.99381 5.11580 5.21618 5.27075 5.29376 5.36997 5.44258 5.54338 5.57120 5.83257 5.87694 6.15862 6.62418 7.00032 7.23004 7.58125 8.76470 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.003226 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.112178 B = 8677.084690 C = 9069.283789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.243 3.757 4 H 0.028 0.972 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.035 3.965 8 N -0.931 5.931 9 Si 0.924 3.076 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.258 1.258 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.581 6.581 16 C -0.097 4.097 17 C -0.064 4.064 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.101 4.101 21 C -0.102 4.102 22 Br -0.054 7.054 23 C -0.091 4.091 24 H 0.029 0.971 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.270 0.730 30 H 0.406 0.594 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.996 6.401 12.890 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.046 0.954 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.749 3.251 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.182 1.182 13 N -0.355 5.355 14 C 0.288 3.712 15 O -0.462 6.462 16 C -0.137 4.137 17 C -0.065 4.065 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.182 4.182 22 Br 0.031 6.969 23 C -0.111 4.111 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.241 0.759 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.165 0.835 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.935 5.963 12.282 24.994 hybrid contribution 0.711 0.192 -0.831 1.110 sum -20.224 6.156 11.450 24.042 Atomic orbital electron populations 1.21752 0.95878 1.00093 1.01165 1.21988 0.94888 0.98234 1.01105 1.18848 0.93031 0.90145 0.84144 0.95404 1.21245 0.90435 1.50100 0.94508 0.92431 1.25563 0.95646 0.94089 1.01287 1.69976 1.11204 1.50559 1.25202 0.86100 0.79900 0.79246 0.79860 1.19989 1.20535 1.18227 1.46341 1.15580 1.56334 1.17218 1.21072 0.81518 0.78414 0.90221 1.90679 1.51585 1.60784 1.43137 1.20757 0.94472 1.02884 0.95564 1.19476 0.94120 0.94313 0.98632 1.21453 0.98536 0.95197 0.96866 1.21433 0.91531 1.01144 0.99126 1.21351 1.00891 0.92013 0.97797 1.21867 0.92445 0.96368 1.07472 1.96676 1.40021 1.68567 1.91640 1.21056 0.90785 0.99858 0.99357 0.95149 0.92737 0.92863 0.93515 0.91868 0.92108 0.75907 0.85429 0.85532 0.84382 0.82618 0.83480 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.53 71.98 0.61 -4.40 16 2 C -0.12 -5.14 5.59 30.59 0.17 -4.96 16 3 C 0.24 11.00 1.89 44.25 0.08 11.09 16 4 H 0.03 1.41 4.73 -2.39 -0.01 1.40 16 5 C -0.52 -27.66 9.05 25.60 0.23 -27.43 16 6 H 0.06 3.22 8.06 -2.91 -0.02 3.19 16 7 C 0.03 1.92 5.47 84.65 0.46 2.38 16 8 N -0.93 -54.93 13.96 21.45 0.30 -54.63 16 9 Si 0.92 44.44 26.99 68.60 1.85 46.29 16 10 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.26 -12.24 6.82 99.48 0.68 -11.57 16 13 N -0.71 -25.63 5.03 -446.08 -2.24 -27.87 16 14 C 0.50 16.78 6.42 87.66 0.56 17.34 16 15 O -0.58 -24.09 13.18 -3.04 -0.04 -24.13 16 16 C -0.10 -2.17 5.83 29.10 0.17 -2.00 16 17 C -0.06 -1.54 4.37 -19.87 -0.09 -1.62 16 18 C -0.10 -2.25 9.70 22.27 0.22 -2.04 16 19 C -0.11 -2.19 10.05 22.26 0.22 -1.97 16 20 C -0.10 -2.03 9.79 22.29 0.22 -1.82 16 21 C -0.10 -2.35 6.22 22.31 0.14 -2.21 16 22 Br -0.05 -1.13 33.70 -20.37 -0.69 -1.82 16 23 C -0.09 -2.20 9.44 22.29 0.21 -1.99 16 24 H 0.03 1.26 7.89 -2.39 -0.02 1.24 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.98 5.63 -2.39 -0.01 1.97 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.41 12.66 8.59 -92.71 -0.80 11.86 16 31 H 0.13 2.22 8.08 -2.39 -0.02 2.20 16 32 H 0.13 2.15 8.09 -2.39 -0.02 2.14 16 33 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -66.36 322.27 2.66 -63.69 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.27 Total: 18.11 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 3.22 Total: -19.64 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.94 Total: -82.50 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.04 Total: -24.13 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.85 Total: 46.29 kcal Atomic # 35 Polarization: -1.13 SS G_CDS: -0.69 Total: -1.82 kcal Total: -66.36 2.66 -63.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.622 kcal (2) G-P(sol) polarization free energy of solvation -66.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds