Wall clock time and date at job start Tue Mar 31 2020 14:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47422 * 2 1 4 4 C 1.37095 * 120.00121 * 263.01899 * 3 2 1 5 5 H 1.08004 * 120.00293 * 142.21690 * 4 3 2 6 6 C 1.38954 * 119.99939 * 322.21251 * 4 3 2 7 7 N 1.31400 * 120.00387 * 157.10264 * 6 4 3 8 8 Si 1.86806 * 119.99833 * 337.09952 * 6 4 3 9 9 H 1.48499 * 109.46828 * 95.20245 * 8 6 4 10 10 H 1.48496 * 109.47182 * 215.20608 * 8 6 4 11 11 H 1.48505 * 109.47215 * 335.20900 * 8 6 4 12 12 C 1.34781 * 119.99895 * 83.01327 * 3 2 1 13 13 O 1.21297 * 119.99859 * 180.02562 * 12 3 2 14 14 C 1.50694 * 119.99906 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.47022 * 180.02562 * 14 12 3 16 16 C 1.50707 * 109.47089 * 179.97438 * 15 14 12 17 17 C 1.38234 * 120.00297 * 99.99758 * 16 15 14 18 18 C 1.38218 * 120.01042 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.01828 * 0.03207 * 18 17 16 20 20 C 1.38190 * 120.00930 * 359.97141 * 19 18 17 21 21 C 1.38304 * 120.00346 * 279.72042 * 16 15 14 22 22 Br 1.89099 * 120.01098 * 0.03014 * 21 16 15 23 23 H 1.08998 * 109.47400 * 60.00184 * 1 2 3 24 24 H 1.09005 * 109.47616 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47137 * 299.99912 * 1 2 3 26 26 H 1.09008 * 109.47189 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.46946 * 120.00043 * 2 1 3 28 28 H 0.97000 * 120.00710 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47557 * 60.00059 * 14 12 3 30 30 H 1.09005 * 109.47538 * 299.99841 * 14 12 3 31 31 H 1.08998 * 109.46853 * 60.00146 * 15 14 12 32 32 H 1.08997 * 109.46755 * 299.99927 * 15 14 12 33 33 H 1.07996 * 119.99378 * 0.02562 * 17 16 15 34 34 H 1.07997 * 119.99136 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.99273 * 179.97438 * 19 18 17 36 36 H 1.08002 * 120.00516 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3829 1.9793 -1.1785 5 1 2.1614 3.0231 -1.3455 6 6 3.0376 1.2427 -2.1581 7 7 2.9937 1.6321 -3.4123 8 14 3.9803 -0.3012 -1.6919 9 1 3.1111 -1.4895 -1.8863 10 1 5.1855 -0.4236 -2.5508 11 1 4.3935 -0.2180 -0.2679 12 6 2.1091 2.0638 1.1586 13 8 2.5131 3.2075 1.1585 14 6 1.7088 1.4061 2.4540 15 6 1.9062 2.3909 3.6082 16 6 1.5052 1.7334 4.9037 17 6 2.4727 1.2161 5.7447 18 6 2.1052 0.6136 6.9331 19 6 0.7697 0.5273 7.2809 20 6 -0.1981 1.0440 6.4407 21 6 0.1697 1.6526 5.2539 22 35 -1.1537 2.3662 4.1070 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.4504 1.1177 -4.0962 29 1 2.3265 0.5234 2.6194 30 1 0.6605 1.1117 2.4033 31 1 1.2882 3.2733 3.4426 32 1 2.9543 2.6856 3.6591 33 1 3.5159 1.2836 5.4736 34 1 2.8612 0.2092 7.5897 35 1 0.4830 0.0560 8.2093 36 1 -1.2412 0.9770 6.7126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:41 Heat of formation + Delta-G solvation = -24.635961 kcal Electronic energy + Delta-G solvation = -19634.393899 eV Core-core repulsion = 16550.109070 eV Total energy + Delta-G solvation = -3084.284829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89402 -40.12631 -37.11802 -35.15190 -34.27563 -33.11564 -31.40312 -30.95723 -30.01046 -27.38120 -25.10518 -24.36772 -23.39341 -21.98767 -20.46765 -18.86600 -18.06566 -17.53936 -17.23793 -16.89181 -16.02259 -15.90145 -15.66448 -15.02435 -14.72555 -14.40062 -14.32806 -14.24987 -14.18170 -13.69152 -13.45227 -13.22270 -12.82695 -12.68238 -12.52995 -12.31246 -12.14211 -11.98420 -11.92725 -11.70005 -11.49201 -11.07277 -11.03402 -10.38597 -9.79975 -9.71023 -9.58462 -8.51554 -6.12486 0.16254 0.34960 0.73363 1.18610 1.31016 1.43747 1.96257 2.17837 2.62094 2.76448 2.97075 3.64801 3.82540 4.00801 4.05872 4.08529 4.19935 4.27764 4.39361 4.45238 4.47656 4.54449 4.61078 4.74666 4.88554 4.94518 4.99518 5.05196 5.19035 5.32276 5.36977 5.48639 5.53684 5.55940 5.92957 6.05025 6.57619 6.95907 7.32365 7.89718 8.66115 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.004422 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.559229 B = 6330.375436 C = 6931.368305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.078 3.922 3 N -0.478 5.478 4 C -0.334 4.334 5 H 0.040 0.960 6 C 0.014 3.986 7 N -0.911 5.911 8 Si 0.945 3.055 9 H -0.238 1.238 10 H -0.287 1.287 11 H -0.257 1.257 12 C 0.460 3.540 13 O -0.615 6.615 14 C -0.117 4.117 15 C -0.066 4.066 16 C -0.064 4.064 17 C -0.119 4.119 18 C -0.098 4.098 19 C -0.116 4.116 20 C -0.094 4.094 21 C -0.104 4.104 22 Br -0.064 7.064 23 H 0.038 0.962 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.280 0.720 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -9.525 23.815 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.044 4.044 3 N -0.200 5.200 4 C -0.462 4.462 5 H 0.058 0.942 6 C -0.188 4.188 7 N -0.548 5.548 8 Si 0.767 3.233 9 H -0.163 1.163 10 H -0.214 1.214 11 H -0.181 1.181 12 C 0.251 3.749 13 O -0.500 6.500 14 C -0.157 4.157 15 C -0.104 4.104 16 C -0.066 4.066 17 C -0.138 4.138 18 C -0.116 4.116 19 C -0.134 4.134 20 C -0.114 4.114 21 C -0.184 4.184 22 Br 0.022 6.978 23 H 0.057 0.943 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.179 0.821 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.383 -8.720 23.153 25.819 hybrid contribution 0.737 0.056 -0.660 0.991 sum -6.646 -8.664 22.493 25.003 Atomic orbital electron populations 1.22095 0.94284 1.03353 1.01776 1.22064 0.96509 0.83245 1.02617 1.43924 1.57609 1.13177 1.05271 1.18616 1.38766 0.96548 0.92235 0.94196 1.26132 0.96398 1.02271 0.94001 1.69882 1.41261 1.42655 1.01030 0.85889 0.78736 0.79286 0.79356 1.16311 1.21421 1.18133 1.21239 0.80503 0.87217 0.85971 1.90515 1.51366 1.20673 1.87492 1.21610 1.04130 0.99546 0.90397 1.20326 1.02608 0.97443 0.90052 1.19784 0.92223 0.98341 0.96229 1.21335 0.99529 0.98303 0.94628 1.21646 0.97331 0.96757 0.95837 1.21542 0.92354 0.99205 1.00329 1.21366 1.01633 0.96473 0.91918 1.21899 0.92446 1.06319 0.97695 1.96734 1.51563 1.84754 1.64789 0.94274 0.88599 0.92013 0.91774 0.88547 0.91074 0.87759 0.88095 0.91481 0.90875 0.84251 0.82448 0.82088 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 10.11 71.98 0.73 -4.39 16 2 C 0.08 2.98 4.46 86.38 0.39 3.37 16 3 N -0.48 -23.70 2.18 -635.54 -1.39 -25.09 16 4 C -0.33 -20.13 9.35 84.04 0.79 -19.34 16 5 H 0.04 2.84 7.92 -2.91 -0.02 2.81 16 6 C 0.01 0.80 5.24 84.93 0.45 1.25 16 7 N -0.91 -55.11 13.96 21.66 0.30 -54.81 16 8 Si 0.94 42.17 25.12 68.60 1.72 43.90 16 9 H -0.24 -9.24 6.67 99.48 0.66 -8.58 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 12 C 0.46 21.97 7.57 87.65 0.66 22.64 16 13 O -0.62 -35.17 15.85 -3.08 -0.05 -35.22 16 14 C -0.12 -3.97 4.22 29.85 0.13 -3.84 16 15 C -0.07 -2.11 4.04 29.85 0.12 -1.99 16 16 C -0.06 -1.58 5.14 -19.85 -0.10 -1.68 16 17 C -0.12 -2.32 9.67 22.26 0.22 -2.11 16 18 C -0.10 -1.37 10.05 22.27 0.22 -1.14 16 19 C -0.12 -1.53 10.05 22.27 0.22 -1.30 16 20 C -0.09 -1.64 9.79 22.28 0.22 -1.42 16 21 C -0.10 -2.42 6.22 22.31 0.14 -2.29 16 22 Br -0.06 -1.65 30.87 -20.37 -0.63 -2.28 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 25 H 0.06 1.89 6.39 -2.39 -0.02 1.88 16 26 H 0.06 2.59 3.72 -2.38 -0.01 2.58 16 27 H 0.10 2.95 6.74 -2.39 -0.02 2.94 16 28 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.10 3.02 7.42 -2.39 -0.02 3.00 16 30 H 0.10 3.15 5.22 -2.38 -0.01 3.14 16 31 H 0.07 2.40 7.09 -2.39 -0.02 2.38 16 32 H 0.07 2.41 7.96 -2.39 -0.02 2.39 16 33 H 0.14 2.42 8.04 -2.91 -0.02 2.40 16 34 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -75.82 314.03 5.18 -70.64 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.05 Total: 15.11 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 4.17 Total: -12.25 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.09 Total: -79.89 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.05 Total: -35.22 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.72 Total: 43.90 kcal Atomic # 35 Polarization: -1.65 SS G_CDS: -0.63 Total: -2.28 kcal Total: -75.82 5.18 -70.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.007 kcal (2) G-P(sol) polarization free energy of solvation -75.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds