Wall clock time and date at job start Tue Mar 31 2020 14:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46950 * 2 1 4 4 N 1.46502 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.36870 * 120.00333 * 96.68303 * 4 3 2 6 6 H 1.07996 * 120.00182 * 160.42444 * 5 4 3 7 7 C 1.39054 * 119.99670 * 340.43269 * 5 4 3 8 8 N 1.31358 * 119.99970 * 357.54934 * 7 5 4 9 9 Si 1.86802 * 119.99733 * 177.55262 * 7 5 4 10 10 H 1.48497 * 109.47053 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47071 * 119.99963 * 9 7 5 12 12 H 1.48499 * 109.46653 * 239.99462 * 9 7 5 13 13 C 1.34779 * 119.99774 * 276.68569 * 4 3 2 14 14 O 1.21591 * 119.99848 * 184.36816 * 13 4 3 15 15 C 1.47726 * 120.00103 * 4.37177 * 13 4 3 16 16 C 1.39654 * 120.14443 * 304.95221 * 15 13 4 17 17 C 1.38008 * 119.83486 * 180.02562 * 16 15 13 18 18 Br 1.89096 * 119.93728 * 180.02562 * 17 16 15 19 19 C 1.38491 * 120.13092 * 0.02562 * 17 16 15 20 20 C 1.38332 * 120.29413 * 0.27257 * 19 17 16 21 21 C 1.37967 * 120.16350 * 359.44961 * 20 19 17 22 22 C 1.50697 * 120.06903 * 180.25330 * 21 20 19 23 23 H 1.08998 * 109.47109 * 299.99061 * 1 2 3 24 24 H 1.08999 * 109.47370 * 59.99592 * 1 2 3 25 25 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47199 * 240.00509 * 2 1 3 27 27 H 1.08999 * 109.47370 * 120.00408 * 2 1 3 28 28 H 1.08998 * 109.46448 * 60.00535 * 3 2 1 29 29 H 1.08999 * 109.47417 * 300.00379 * 3 2 1 30 30 H 0.97004 * 120.00136 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.08331 * 0.04277 * 16 15 13 32 32 H 1.07998 * 119.85141 * 180.02562 * 19 17 16 33 33 H 1.07998 * 119.91941 * 179.72624 * 20 19 17 34 34 H 1.09004 * 109.47330 * 273.94132 * 22 21 20 35 35 H 1.09003 * 109.47422 * 33.93595 * 22 21 20 36 36 H 1.08998 * 109.47501 * 153.93600 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1889 1.5807 -1.1781 6 1 5.2221 1.8951 -1.1689 7 6 3.5534 1.3164 -2.3863 8 7 2.3117 0.8879 -2.3953 9 14 4.4655 1.5706 -3.9966 10 1 5.8405 2.0558 -3.7154 11 1 4.5354 0.2837 -4.7344 12 1 3.7453 2.5748 -4.8201 13 6 4.1793 1.3065 1.1584 14 8 5.3926 1.3860 1.1688 15 6 3.4444 1.0607 2.4161 16 6 2.4318 1.9341 2.8188 17 6 1.7497 1.6986 3.9952 18 35 0.3776 2.8789 4.5429 19 6 2.0682 0.5997 4.7755 20 6 3.0744 -0.2655 4.3848 21 6 3.7603 -0.0449 3.2082 22 6 4.8522 -0.9919 2.7818 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9562 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.8684 0.7031 -3.2382 31 1 2.1829 2.7914 2.2110 32 1 1.5312 0.4195 5.6950 33 1 3.3207 -1.1182 5.0001 34 1 5.7931 -0.6936 3.2443 35 1 4.5982 -2.0044 3.0956 36 1 4.9553 -0.9629 1.6971 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087742594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:48 Heat of formation + Delta-G solvation = 0.927720 kcal Electronic energy + Delta-G solvation = -20440.453023 eV Core-core repulsion = 17357.276719 eV Total energy + Delta-G solvation = -3083.176305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.80105 -37.72177 -35.40978 -33.02096 -32.43271 -31.49767 -30.63944 -30.15359 -26.36158 -25.81382 -24.70843 -22.95375 -21.36457 -20.64039 -19.08576 -17.10990 -16.47273 -15.85244 -15.39277 -14.86420 -14.27318 -13.99763 -13.65033 -13.50309 -13.18737 -13.05798 -12.76444 -12.41321 -12.27074 -11.96229 -11.64919 -11.41235 -11.13650 -11.02751 -10.96699 -10.69257 -10.47404 -10.39349 -10.33350 -10.19865 -10.13537 -9.73416 -8.91451 -8.70206 -8.43749 -8.23314 -7.69763 -6.32088 -3.94105 1.29207 1.44940 1.78124 3.09742 3.21306 3.27748 3.58075 3.96995 4.14486 4.73743 4.95949 5.09005 5.12715 5.24875 5.48340 5.56475 5.85255 5.91370 6.00970 6.04299 6.07172 6.13931 6.30901 6.34527 6.42269 6.47770 6.51431 6.73056 6.84421 6.90735 6.95141 7.03950 7.33234 7.50142 7.71553 8.04647 8.45090 9.08498 9.33030 9.88649 10.59635 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.004933 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.771246 B = 5674.718162 C = 6391.261170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.115 3.885 4 N -0.428 5.428 5 C -0.296 4.296 6 H 0.103 0.897 7 C 0.027 3.973 8 N -0.869 5.869 9 Si 0.930 3.070 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.477 3.523 14 O -0.584 6.584 15 C -0.077 4.077 16 C -0.067 4.067 17 C -0.098 4.098 18 Br -0.064 7.064 19 C -0.091 4.091 20 C -0.122 4.122 21 C -0.035 4.035 22 C -0.113 4.113 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.026 0.974 28 H 0.037 0.963 29 H 0.114 0.886 30 H 0.267 0.733 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 -0.753 11.453 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C -0.008 4.008 4 N -0.144 5.144 5 C -0.424 4.424 6 H 0.121 0.879 7 C -0.176 4.176 8 N -0.510 5.510 9 Si 0.757 3.243 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.265 3.735 14 O -0.470 6.470 15 C -0.081 4.081 16 C -0.088 4.088 17 C -0.178 4.178 18 Br 0.021 6.979 19 C -0.111 4.111 20 C -0.141 4.141 21 C -0.037 4.037 22 C -0.170 4.170 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.558 -0.298 11.445 13.194 hybrid contribution 0.344 -0.190 -0.874 0.958 sum -6.214 -0.489 10.571 12.272 Atomic orbital electron populations 1.21575 0.97352 0.99855 1.00572 1.21855 0.94019 0.98157 1.01543 1.21920 0.80126 0.97439 1.01337 1.43740 1.05798 1.59501 1.05314 1.19835 0.97972 1.42436 0.82112 0.87932 1.25381 0.96233 0.96193 0.99743 1.70025 1.10869 1.43331 1.26732 0.85782 0.79630 0.77964 0.80910 1.19254 1.20658 1.20681 1.17798 0.87098 0.85158 0.83430 1.90626 1.13269 1.56840 1.86221 1.20217 0.95961 0.95097 0.96839 1.21312 0.93883 0.99475 0.94101 1.21545 0.99151 0.98021 0.99040 1.96636 1.48504 1.61975 1.90785 1.21012 0.97659 0.93380 0.99098 1.20885 0.96622 1.00028 0.96553 1.20038 0.96016 0.94431 0.93197 1.20813 0.96277 0.96313 1.03580 0.94479 0.92656 0.94317 0.88563 0.95534 0.94529 0.86850 0.92222 0.84569 0.85426 0.85251 0.90609 0.92012 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.12 -2.45 5.57 -26.73 -0.15 -2.60 16 3 C 0.11 2.54 4.29 -4.04 -0.02 2.52 16 4 N -0.43 -10.65 2.64 -115.92 -0.31 -10.96 16 5 C -0.30 -7.87 9.40 -15.00 -0.14 -8.01 16 6 H 0.10 2.88 7.30 -52.49 -0.38 2.50 16 7 C 0.03 0.67 5.29 -17.45 -0.09 0.58 16 8 N -0.87 -21.14 7.85 55.50 0.44 -20.71 16 9 Si 0.93 19.93 29.55 -169.99 -5.02 14.90 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.48 11.62 5.96 -12.38 -0.07 11.55 16 14 O -0.58 -15.97 15.70 5.29 0.08 -15.89 16 15 C -0.08 -1.55 4.24 -104.97 -0.45 -1.99 16 16 C -0.07 -1.21 7.57 -39.14 -0.30 -1.51 16 17 C -0.10 -1.53 6.22 -39.57 -0.25 -1.77 16 18 Br -0.06 -0.86 33.69 -68.01 -2.29 -3.15 16 19 C -0.09 -1.27 9.78 -39.45 -0.39 -1.65 16 20 C -0.12 -1.74 9.70 -39.65 -0.38 -2.13 16 21 C -0.04 -0.62 5.91 -104.20 -0.62 -1.24 16 22 C -0.11 -1.90 9.24 36.00 0.33 -1.56 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 2.28 6.23 -51.93 -0.32 1.95 16 27 H 0.03 0.55 7.32 -51.93 -0.38 0.17 16 28 H 0.04 0.75 4.15 -51.93 -0.22 0.53 16 29 H 0.11 2.71 5.87 -51.93 -0.30 2.41 16 30 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 31 H 0.14 2.48 6.64 -52.49 -0.35 2.13 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 36 H 0.08 1.57 6.67 -51.93 -0.35 1.22 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -27.63 313.10 -8.92 -36.55 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.39 Total: 4.38 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.15 Total: -9.85 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.13 Total: -31.66 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.29 Total: -3.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.63 -8.92 -36.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087742594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.479 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds