Wall clock time and date at job start Tue Mar 31 2020 14:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46950 * 2 1 4 4 N 1.46502 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.36870 * 120.00333 * 96.68303 * 4 3 2 6 6 H 1.07996 * 120.00182 * 160.42444 * 5 4 3 7 7 C 1.39054 * 119.99670 * 340.43269 * 5 4 3 8 8 N 1.31358 * 119.99970 * 357.54934 * 7 5 4 9 9 Si 1.86802 * 119.99733 * 177.55262 * 7 5 4 10 10 H 1.48497 * 109.47053 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47071 * 119.99963 * 9 7 5 12 12 H 1.48499 * 109.46653 * 239.99462 * 9 7 5 13 13 C 1.34779 * 119.99774 * 276.68569 * 4 3 2 14 14 O 1.21591 * 119.99848 * 184.36816 * 13 4 3 15 15 C 1.47726 * 120.00103 * 4.37177 * 13 4 3 16 16 C 1.39654 * 120.14443 * 304.95221 * 15 13 4 17 17 C 1.38008 * 119.83486 * 180.02562 * 16 15 13 18 18 Br 1.89096 * 119.93728 * 180.02562 * 17 16 15 19 19 C 1.38491 * 120.13092 * 0.02562 * 17 16 15 20 20 C 1.38332 * 120.29413 * 0.27257 * 19 17 16 21 21 C 1.37967 * 120.16350 * 359.44961 * 20 19 17 22 22 C 1.50697 * 120.06903 * 180.25330 * 21 20 19 23 23 H 1.08998 * 109.47109 * 299.99061 * 1 2 3 24 24 H 1.08999 * 109.47370 * 59.99592 * 1 2 3 25 25 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47199 * 240.00509 * 2 1 3 27 27 H 1.08999 * 109.47370 * 120.00408 * 2 1 3 28 28 H 1.08998 * 109.46448 * 60.00535 * 3 2 1 29 29 H 1.08999 * 109.47417 * 300.00379 * 3 2 1 30 30 H 0.97004 * 120.00136 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.08331 * 0.04277 * 16 15 13 32 32 H 1.07998 * 119.85141 * 180.02562 * 19 17 16 33 33 H 1.07998 * 119.91941 * 179.72624 * 20 19 17 34 34 H 1.09004 * 109.47330 * 273.94132 * 22 21 20 35 35 H 1.09003 * 109.47422 * 33.93595 * 22 21 20 36 36 H 1.08998 * 109.47501 * 153.93600 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1889 1.5807 -1.1781 6 1 5.2221 1.8951 -1.1689 7 6 3.5534 1.3164 -2.3863 8 7 2.3117 0.8879 -2.3953 9 14 4.4655 1.5706 -3.9966 10 1 5.8405 2.0558 -3.7154 11 1 4.5354 0.2837 -4.7344 12 1 3.7453 2.5748 -4.8201 13 6 4.1793 1.3065 1.1584 14 8 5.3926 1.3860 1.1688 15 6 3.4444 1.0607 2.4161 16 6 2.4318 1.9341 2.8188 17 6 1.7497 1.6986 3.9952 18 35 0.3776 2.8789 4.5429 19 6 2.0682 0.5997 4.7755 20 6 3.0744 -0.2655 4.3848 21 6 3.7603 -0.0449 3.2082 22 6 4.8522 -0.9919 2.7818 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9562 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.8684 0.7031 -3.2382 31 1 2.1829 2.7914 2.2110 32 1 1.5312 0.4195 5.6950 33 1 3.3207 -1.1182 5.0001 34 1 5.7931 -0.6936 3.2443 35 1 4.5982 -2.0044 3.0956 36 1 4.9553 -0.9629 1.6971 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087742594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:47 Heat of formation + Delta-G solvation = -12.811723 kcal Electronic energy + Delta-G solvation = -20441.048810 eV Core-core repulsion = 17357.276719 eV Total energy + Delta-G solvation = -3083.772091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35500 -39.30523 -37.28932 -34.30461 -34.21331 -33.24570 -32.09501 -31.35562 -27.89884 -27.40398 -26.39190 -24.42694 -22.76479 -22.29287 -20.69729 -18.99610 -18.18565 -17.25829 -16.78831 -16.58994 -16.00889 -15.50069 -15.30080 -15.05988 -14.70292 -14.53204 -14.22757 -13.87164 -13.61930 -13.53776 -13.18380 -13.08170 -12.77425 -12.54048 -12.47643 -12.23271 -12.15049 -12.08166 -11.93594 -11.57230 -11.46543 -11.29433 -10.75729 -10.44459 -9.94298 -9.56983 -9.50511 -8.23371 -5.95323 -0.00423 0.16455 0.59385 1.36086 1.41853 1.54233 1.95746 2.25068 2.59132 2.99934 3.15376 3.70232 3.85081 3.89932 4.11301 4.29201 4.40858 4.54108 4.57984 4.64212 4.69337 4.74888 4.84114 4.90209 5.09603 5.10754 5.14537 5.21979 5.25920 5.36268 5.42554 5.54842 5.64714 5.78822 5.92652 6.10192 6.53107 7.13702 7.43249 7.98938 8.65933 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.004933 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.771246 B = 5674.718162 C = 6391.261170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.122 3.878 4 N -0.440 5.440 5 C -0.340 4.340 6 H 0.072 0.928 7 C 0.002 3.998 8 N -0.870 5.870 9 Si 0.990 3.010 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.267 1.267 13 C 0.471 3.529 14 O -0.630 6.630 15 C -0.107 4.107 16 C -0.077 4.077 17 C -0.102 4.102 18 Br -0.040 7.040 19 C -0.074 4.074 20 C -0.106 4.106 21 C -0.049 4.049 22 C -0.109 4.109 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.273 0.727 31 H 0.124 0.876 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 -1.802 13.475 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C -0.001 4.001 4 N -0.155 5.155 5 C -0.468 4.468 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.508 5.508 9 Si 0.814 3.186 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.192 1.192 13 C 0.261 3.739 14 O -0.519 6.519 15 C -0.112 4.112 16 C -0.097 4.097 17 C -0.181 4.181 18 Br 0.045 6.955 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.051 4.051 22 C -0.165 4.165 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.185 0.815 33 H 0.190 0.810 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.752 -1.348 13.470 16.120 hybrid contribution 0.959 0.148 -1.393 1.698 sum -7.793 -1.200 12.076 14.423 Atomic orbital electron populations 1.21481 0.94489 1.01237 1.01119 1.21667 0.96341 0.96654 0.99785 1.21895 0.78713 0.98359 1.01092 1.43924 1.06845 1.59614 1.05153 1.19685 0.97416 1.45738 0.83969 0.91048 1.26006 0.97049 0.95288 1.01712 1.70118 1.11068 1.41978 1.27639 0.84923 0.78017 0.78249 0.77411 1.20459 1.19837 1.19236 1.18505 0.86919 0.83746 0.84765 1.90558 1.15451 1.58628 1.87269 1.19920 0.97696 0.97676 0.95869 1.21153 0.94151 0.98960 0.95453 1.21709 0.99260 0.98961 0.98175 1.96664 1.47076 1.61504 1.90261 1.21515 0.96680 0.91654 0.99528 1.21293 0.95191 1.00926 0.95043 1.20271 0.96679 0.93818 0.94313 1.20770 0.96585 0.98504 1.00659 0.92896 0.93076 0.92502 0.91641 0.95833 0.92766 0.88864 0.91646 0.85805 0.81516 0.80962 0.90542 0.88224 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.91 71.98 0.71 -3.51 16 2 C -0.11 -4.46 5.57 30.60 0.17 -4.29 16 3 C 0.12 5.55 4.29 86.38 0.37 5.92 16 4 N -0.44 -23.22 2.64 -638.93 -1.68 -24.90 16 5 C -0.34 -19.32 9.40 84.10 0.79 -18.53 16 6 H 0.07 4.38 7.30 -2.91 -0.02 4.36 16 7 C 0.00 0.10 5.29 84.96 0.45 0.55 16 8 N -0.87 -43.14 7.85 21.68 0.17 -42.97 16 9 Si 0.99 41.96 29.55 68.60 2.03 43.99 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 12 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 13 C 0.47 24.36 5.96 86.75 0.52 24.87 16 14 O -0.63 -37.09 15.70 -4.00 -0.06 -37.16 16 15 C -0.11 -4.40 4.24 -20.09 -0.09 -4.49 16 16 C -0.08 -2.73 7.57 22.56 0.17 -2.56 16 17 C -0.10 -2.88 6.22 22.28 0.14 -2.74 16 18 Br -0.04 -0.96 33.69 -20.37 -0.69 -1.65 16 19 C -0.07 -1.72 9.78 22.35 0.22 -1.50 16 20 C -0.11 -2.59 9.70 22.23 0.22 -2.38 16 21 C -0.05 -1.68 5.91 -19.59 -0.12 -1.80 16 22 C -0.11 -3.62 9.24 71.24 0.66 -2.96 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 3.17 6.23 -2.38 -0.01 3.15 16 27 H 0.02 0.98 7.32 -2.39 -0.02 0.96 16 28 H 0.05 2.25 4.15 -2.39 -0.01 2.24 16 29 H 0.09 4.60 5.87 -2.39 -0.01 4.59 16 30 H 0.27 12.67 8.31 -92.71 -0.77 11.90 16 31 H 0.12 4.59 6.64 -2.91 -0.02 4.57 16 32 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.10 2.46 8.11 -2.39 -0.02 2.44 16 36 H 0.03 1.43 6.67 -2.39 -0.02 1.41 16 Total: -1.00 -64.80 313.10 5.07 -59.73 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.09 Total: 16.37 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 4.21 Total: -13.41 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -1.51 Total: -67.87 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.06 Total: -37.16 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -0.69 Total: -1.65 kcal Total: -64.80 5.07 -59.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087742594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.918 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds