Wall clock time and date at job start Tue Mar 31 2020 14:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46939 * 2 1 4 4 H 1.09004 * 109.46547 * 55.00080 * 3 2 1 5 5 C 1.50701 * 109.47166 * 174.99752 * 3 2 1 6 6 H 1.08000 * 119.99452 * 119.99991 * 5 3 2 7 7 C 1.37875 * 120.00222 * 300.00474 * 5 3 2 8 8 N 1.31505 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99822 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46963 * 60.00027 * 9 7 5 11 11 H 1.48500 * 109.47201 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47199 * 300.00233 * 9 7 5 13 13 N 1.46495 * 109.47521 * 295.00244 * 3 2 1 14 14 C 1.34778 * 119.99725 * 84.99724 * 13 3 2 15 15 O 1.21553 * 120.00529 * 0.02562 * 14 13 3 16 16 C 1.47854 * 119.99708 * 180.02562 * 14 13 3 17 17 C 1.39587 * 120.14000 * 353.73096 * 16 14 13 18 18 C 1.38023 * 119.83925 * 179.79534 * 17 16 14 19 19 Br 1.89101 * 119.93769 * 180.23300 * 18 17 16 20 20 C 1.38462 * 120.12677 * 0.48771 * 18 17 16 21 21 C 1.38324 * 120.28590 * 359.74819 * 20 18 17 22 22 C 1.37987 * 120.15061 * 0.02562 * 21 20 18 23 23 C 1.50697 * 120.06235 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.46539 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47502 * 60.00018 * 1 2 3 26 26 H 1.08994 * 109.46980 * 299.99003 * 1 2 3 27 27 H 1.08998 * 109.47502 * 119.99982 * 2 1 3 28 28 H 1.08998 * 109.47573 * 240.00603 * 2 1 3 29 29 H 0.97006 * 119.99955 * 179.97438 * 8 7 5 30 30 H 0.96995 * 120.00196 * 265.00385 * 13 3 2 31 31 H 1.08001 * 120.07366 * 0.03085 * 17 16 14 32 32 H 1.08008 * 119.86318 * 179.72014 * 20 18 17 33 33 H 1.07996 * 119.92343 * 179.97438 * 21 20 18 34 34 H 1.08996 * 109.47321 * 263.43610 * 23 22 21 35 35 H 1.09009 * 109.47148 * 23.43409 * 23 22 21 36 36 H 1.08998 * 109.47000 * 143.43074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4063 0.3375 2.1732 9 14 6.0050 0.8802 1.3811 10 1 6.5003 2.2802 1.3808 11 1 6.3979 0.2169 2.6503 12 1 6.5967 0.1456 0.2341 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3411 2.6326 -0.4318 16 6 0.0436 3.3251 -2.6303 17 6 0.9751 3.4791 -3.6584 18 6 0.6019 4.0929 -4.8370 19 35 1.8597 4.2971 -6.2342 20 6 -0.6903 4.5643 -4.9962 21 6 -1.6162 4.4188 -3.9789 22 6 -1.2569 3.8028 -2.7976 23 6 -2.2670 3.6459 -1.6903 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 3.8294 -0.0610 2.9499 30 1 2.2718 2.1233 -1.9977 31 1 1.9843 3.1153 -3.5334 32 1 -0.9765 5.0480 -5.9185 33 1 -2.6223 4.7890 -4.1091 34 1 -2.1479 4.4571 -0.9722 35 1 -3.2730 3.6764 -2.1092 36 1 -2.1111 2.6908 -1.1889 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087742609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:53 Heat of formation + Delta-G solvation = -18.825658 kcal Electronic energy + Delta-G solvation = -19699.951358 eV Core-core repulsion = 16615.918483 eV Total energy + Delta-G solvation = -3084.032875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.13972 -38.17727 -35.22938 -33.30243 -32.60752 -31.61447 -30.51875 -30.23738 -27.15121 -26.28872 -23.93408 -22.97929 -21.53873 -20.25008 -19.41359 -17.70064 -16.22067 -16.01167 -15.47002 -15.05135 -14.83802 -14.58219 -14.18579 -13.56580 -13.23021 -13.08714 -12.70859 -12.52475 -12.27767 -11.90443 -11.72379 -11.52873 -11.26352 -11.21166 -11.00257 -10.84091 -10.70373 -10.42295 -10.34360 -10.18782 -9.65312 -9.09972 -9.08620 -8.94011 -8.60629 -8.50956 -7.86876 -6.14446 -4.24025 0.82296 1.06092 1.50189 3.10713 3.24909 3.30304 3.31538 3.95690 3.98729 4.34871 4.62806 4.75298 4.93466 5.12177 5.17128 5.38775 5.45540 5.61991 5.82454 5.96393 5.98409 6.06395 6.27972 6.36705 6.43076 6.54701 6.62038 6.75738 7.01974 7.16101 7.32500 7.39230 7.58842 7.69455 7.86737 8.14890 8.59151 8.73453 9.03627 9.43149 10.90819 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.004254 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.781172 B = 6580.567812 C = 8279.568273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.542 3.458 15 O -0.535 6.535 16 C -0.122 4.122 17 C -0.056 4.056 18 C -0.107 4.107 19 Br -0.054 7.054 20 C -0.072 4.072 21 C -0.129 4.129 22 C -0.012 4.012 23 C -0.123 4.123 24 H 0.023 0.977 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 7.649 -16.220 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.347 5.347 14 C 0.328 3.672 15 O -0.415 6.415 16 C -0.126 4.126 17 C -0.076 4.076 18 C -0.186 4.186 19 Br 0.031 6.969 20 C -0.092 4.092 21 C -0.147 4.147 22 C -0.013 4.013 23 C -0.179 4.179 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.316 7.571 -15.845 19.024 hybrid contribution 1.159 -0.026 -0.114 1.165 sum -6.156 7.546 -15.959 18.695 Atomic orbital electron populations 1.21847 0.98353 0.98126 1.01171 1.21941 0.92642 0.99709 1.02376 1.18835 0.94314 0.89212 0.80701 0.93048 1.21178 0.90627 1.39265 1.06383 0.92148 1.24861 0.98597 0.94721 0.95328 1.69876 1.35244 1.37447 1.09323 0.86522 0.84850 0.78352 0.77481 1.20169 1.21106 1.20131 1.46503 1.14213 1.55310 1.18679 1.18009 0.83123 0.79456 0.86599 1.90694 1.50626 1.60457 1.39746 1.20235 0.94274 1.02472 0.95599 1.21346 0.99840 0.95489 0.90937 1.21608 0.94741 1.07467 0.94805 1.96707 1.56848 1.97038 1.46273 1.21197 0.91293 0.97385 0.99368 1.21048 0.99904 1.00908 0.92889 1.20242 0.93713 0.92121 0.95239 1.21141 0.94813 1.05967 0.95979 0.95816 0.94335 0.93048 0.88182 0.95006 0.92473 0.77958 0.84445 0.84939 0.84752 0.90359 0.92685 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.28 11.29 55.43 0.63 -23.65 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.70 -14.26 4.97 -55.87 -0.28 -14.53 16 14 C 0.54 10.51 6.27 -12.32 -0.08 10.43 16 15 O -0.54 -11.53 10.47 5.32 0.06 -11.48 16 16 C -0.12 -1.92 5.87 -104.97 -0.62 -2.54 16 17 C -0.06 -0.78 9.26 -39.16 -0.36 -1.14 16 18 C -0.11 -1.32 6.22 -39.58 -0.25 -1.56 16 19 Br -0.05 -0.60 33.69 -68.01 -2.29 -2.89 16 20 C -0.07 -0.78 9.78 -39.47 -0.39 -1.17 16 21 C -0.13 -1.42 9.66 -39.64 -0.38 -1.81 16 22 C -0.01 -0.16 5.91 -104.22 -0.62 -0.78 16 23 C -0.12 -1.66 8.73 36.00 0.31 -1.35 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 26 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 27 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 7.00 6.61 -40.82 -0.27 6.73 16 31 H 0.14 1.83 6.45 -52.49 -0.34 1.49 16 32 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.58 8.04 -51.92 -0.42 0.16 16 36 H 0.10 1.68 5.85 -51.93 -0.30 1.37 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -28.01 313.78 -9.32 -37.33 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.39 Total: 6.88 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.75 Total: -11.76 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.35 Total: -38.19 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.06 Total: -11.48 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.01 -9.32 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087742609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.501 kcal (2) G-P(sol) polarization free energy of solvation -28.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds