Wall clock time and date at job start Tue Mar 31 2020 14:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47068 * 2 1 4 4 C 1.46494 * 120.00118 * 264.50589 * 3 2 1 5 5 C 1.50694 * 109.47174 * 269.99894 * 4 3 2 6 6 H 1.07997 * 120.00213 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99824 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00203 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99882 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46836 * 60.00503 * 9 7 5 11 11 H 1.48497 * 109.47212 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47680 * 300.00597 * 9 7 5 13 13 C 1.34782 * 119.99578 * 84.50318 * 3 2 1 14 14 O 1.21546 * 119.99593 * 185.90181 * 13 3 2 15 15 C 1.47848 * 119.99888 * 5.91212 * 13 3 2 16 16 C 1.39597 * 120.14151 * 54.25671 * 15 13 3 17 17 C 1.37947 * 119.87338 * 179.97438 * 16 15 13 18 18 C 1.38367 * 120.15468 * 359.72971 * 17 16 15 19 19 C 1.38420 * 120.28185 * 0.54952 * 18 17 16 20 20 Br 1.89095 * 119.93808 * 179.72205 * 19 18 17 21 21 C 1.38078 * 120.12660 * 359.44738 * 19 18 17 22 22 C 1.50699 * 120.08287 * 180.25411 * 21 19 18 23 23 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47080 * 299.99325 * 1 2 3 25 25 H 1.08997 * 109.47096 * 60.00257 * 1 2 3 26 26 H 1.09000 * 109.46818 * 240.00123 * 2 1 3 27 27 H 1.09000 * 109.46945 * 120.00499 * 2 1 3 28 28 H 1.09000 * 109.47254 * 30.00256 * 4 3 2 29 29 H 1.09002 * 109.47003 * 149.99685 * 4 3 2 30 30 H 0.97007 * 120.00232 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.06619 * 0.02562 * 16 15 13 32 32 H 1.08002 * 119.92189 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.85710 * 180.27093 * 18 17 16 34 34 H 1.08994 * 109.46987 * 85.00416 * 22 21 19 35 35 H 1.08997 * 109.47204 * 205.00840 * 22 21 19 36 36 H 1.09003 * 109.46966 * 325.00385 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3771 2.0314 -1.2628 5 6 3.8334 1.7829 -1.5598 6 1 4.4321 1.1995 -0.8761 7 6 4.4016 2.3005 -2.7045 8 7 3.6727 3.0114 -3.5369 9 14 6.2070 1.9931 -3.0723 10 1 6.4482 0.5318 -3.1813 11 1 6.5706 2.6520 -4.3525 12 1 7.0378 2.5514 -1.9754 13 6 2.1376 2.0538 1.1619 14 8 2.4393 3.2312 1.1543 15 6 1.9015 1.3593 2.4456 16 6 2.6010 0.1899 2.7489 17 6 2.3768 -0.4533 3.9484 18 6 1.4649 0.0610 4.8531 19 6 0.7636 1.2170 4.5566 20 35 -0.4860 1.9071 5.7968 21 6 0.9789 1.8703 3.3594 22 6 0.2190 3.1319 3.0400 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.7670 1.6223 -2.0682 29 1 2.2005 3.1040 -1.1823 30 1 4.0725 3.3758 -4.3421 31 1 3.3168 -0.2101 2.0461 32 1 2.9178 -1.3579 4.1840 33 1 1.2964 -0.4440 5.7927 34 1 0.7337 3.9868 3.4784 35 1 0.1616 3.2576 1.9588 36 1 -0.7879 3.0637 3.4518 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088441024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:44 Heat of formation + Delta-G solvation = -10.733824 kcal Electronic energy + Delta-G solvation = -19902.484732 eV Core-core repulsion = 16818.802745 eV Total energy + Delta-G solvation = -3083.681987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20389 -38.09332 -35.41052 -33.15537 -32.89787 -32.01975 -30.13530 -29.64273 -27.39909 -26.66570 -24.02649 -23.10722 -22.06535 -21.38642 -18.79489 -16.79080 -16.47931 -16.07758 -15.80359 -15.58767 -14.52632 -14.27993 -14.00995 -13.84373 -13.33716 -13.28092 -12.98595 -12.43046 -12.27780 -12.21731 -12.01961 -11.72147 -11.54397 -11.30834 -11.19754 -10.99364 -10.92716 -10.71027 -10.48809 -10.23157 -10.16797 -9.69576 -9.12048 -8.78546 -8.69567 -8.46012 -7.71565 -6.07593 -4.13086 0.92498 1.11616 1.51245 3.16150 3.29551 3.34503 3.37368 3.64765 3.87524 4.41275 4.69023 4.71417 4.91012 5.02815 5.22010 5.26783 5.37534 5.49619 5.60679 5.64992 5.67005 5.77777 5.80254 6.04111 6.08401 6.20016 6.21620 6.26739 6.39234 6.47889 6.66246 7.02988 7.40221 7.48622 7.88214 8.18621 8.32880 8.82480 8.98840 9.52152 11.00349 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.026204 B = 0.003500 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.265788 B = 7998.395906 C = 8117.793474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.551 3.449 14 O -0.529 6.529 15 C -0.105 4.105 16 C -0.072 4.072 17 C -0.126 4.126 18 C -0.079 4.079 19 C -0.100 4.100 20 Br -0.052 7.052 21 C -0.014 4.014 22 C -0.124 4.124 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -8.186 17.797 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.337 3.663 14 O -0.407 6.407 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.145 4.145 18 C -0.099 4.099 19 C -0.179 4.179 20 Br 0.033 6.967 21 C -0.017 4.017 22 C -0.181 4.181 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.653 -7.185 18.025 21.672 hybrid contribution 1.371 -0.450 -0.559 1.547 sum -8.283 -7.636 17.465 20.783 Atomic orbital electron populations 1.22194 0.96691 1.01476 1.02210 1.21634 0.93703 0.84188 1.03053 1.48215 1.62437 1.13217 1.08013 1.19332 0.95453 0.94488 0.78047 1.21381 0.95174 1.33809 1.06531 0.92502 1.24924 0.98219 0.94841 0.95961 1.69919 1.36248 1.34664 1.12353 0.86563 0.84944 0.78335 0.77613 1.20212 1.21129 1.20166 1.18009 0.78494 0.86541 0.83270 1.90773 1.47812 1.15212 1.86877 1.20159 0.98294 0.96243 0.96208 1.21466 0.97771 0.92986 0.96806 1.21052 0.98946 1.00772 0.93744 1.21147 0.95031 0.94009 0.99687 1.21557 1.01399 0.99619 0.95351 1.96645 1.56682 1.86642 1.56705 1.19774 0.94839 0.95970 0.91133 1.21013 0.99166 0.94112 1.03775 0.92146 0.93101 0.92119 0.89702 0.91194 0.94800 0.93641 0.92594 0.84451 0.84753 0.84993 0.89743 0.90407 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.20 37.16 0.38 -1.96 16 2 C 0.10 1.59 5.89 -4.04 -0.02 1.56 16 3 N -0.59 -12.30 2.47 -176.18 -0.43 -12.73 16 4 C 0.25 6.31 5.18 -5.20 -0.03 6.29 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.55 11.59 6.01 -12.33 -0.07 11.51 16 14 O -0.53 -13.29 15.51 5.33 0.08 -13.21 16 15 C -0.10 -1.74 4.87 -104.97 -0.51 -2.25 16 16 C -0.07 -0.98 7.60 -39.18 -0.30 -1.28 16 17 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 18 C -0.08 -0.86 9.78 -39.47 -0.39 -1.25 16 19 C -0.10 -1.28 6.21 -39.57 -0.25 -1.52 16 20 Br -0.05 -0.58 31.88 -68.01 -2.17 -2.74 16 21 C -0.01 -0.22 5.91 -104.19 -0.62 -0.83 16 22 C -0.12 -1.84 8.70 36.01 0.31 -1.52 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.72 8.03 -51.93 -0.42 0.30 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.39 8.03 -51.93 -0.42 0.98 16 27 H 0.07 0.98 4.49 -51.93 -0.23 0.75 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.14 1.83 7.32 -52.49 -0.38 1.45 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.31 6.57 -51.93 -0.34 0.97 16 36 H 0.07 0.92 6.89 -51.93 -0.36 0.57 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -31.50 322.64 -8.86 -40.36 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.61 Total: -1.16 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.31 Total: -6.41 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.30 Total: -38.21 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.17 Total: -2.74 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.50 -8.86 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088441024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.631 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds