Wall clock time and date at job start Tue Mar 31 2020 14:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47068 * 2 1 4 4 C 1.46494 * 120.00118 * 264.50589 * 3 2 1 5 5 C 1.50694 * 109.47174 * 269.99894 * 4 3 2 6 6 H 1.07997 * 120.00213 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99824 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00203 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99882 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46836 * 60.00503 * 9 7 5 11 11 H 1.48497 * 109.47212 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47680 * 300.00597 * 9 7 5 13 13 C 1.34782 * 119.99578 * 84.50318 * 3 2 1 14 14 O 1.21546 * 119.99593 * 185.90181 * 13 3 2 15 15 C 1.47848 * 119.99888 * 5.91212 * 13 3 2 16 16 C 1.39597 * 120.14151 * 54.25671 * 15 13 3 17 17 C 1.37947 * 119.87338 * 179.97438 * 16 15 13 18 18 C 1.38367 * 120.15468 * 359.72971 * 17 16 15 19 19 C 1.38420 * 120.28185 * 0.54952 * 18 17 16 20 20 Br 1.89095 * 119.93808 * 179.72205 * 19 18 17 21 21 C 1.38078 * 120.12660 * 359.44738 * 19 18 17 22 22 C 1.50699 * 120.08287 * 180.25411 * 21 19 18 23 23 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47080 * 299.99325 * 1 2 3 25 25 H 1.08997 * 109.47096 * 60.00257 * 1 2 3 26 26 H 1.09000 * 109.46818 * 240.00123 * 2 1 3 27 27 H 1.09000 * 109.46945 * 120.00499 * 2 1 3 28 28 H 1.09000 * 109.47254 * 30.00256 * 4 3 2 29 29 H 1.09002 * 109.47003 * 149.99685 * 4 3 2 30 30 H 0.97007 * 120.00232 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.06619 * 0.02562 * 16 15 13 32 32 H 1.08002 * 119.92189 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.85710 * 180.27093 * 18 17 16 34 34 H 1.08994 * 109.46987 * 85.00416 * 22 21 19 35 35 H 1.08997 * 109.47204 * 205.00840 * 22 21 19 36 36 H 1.09003 * 109.46966 * 325.00385 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3771 2.0314 -1.2628 5 6 3.8334 1.7829 -1.5598 6 1 4.4321 1.1995 -0.8761 7 6 4.4016 2.3005 -2.7045 8 7 3.6727 3.0114 -3.5369 9 14 6.2070 1.9931 -3.0723 10 1 6.4482 0.5318 -3.1813 11 1 6.5706 2.6520 -4.3525 12 1 7.0378 2.5514 -1.9754 13 6 2.1376 2.0538 1.1619 14 8 2.4393 3.2312 1.1543 15 6 1.9015 1.3593 2.4456 16 6 2.6010 0.1899 2.7489 17 6 2.3768 -0.4533 3.9484 18 6 1.4649 0.0610 4.8531 19 6 0.7636 1.2170 4.5566 20 35 -0.4860 1.9071 5.7968 21 6 0.9789 1.8703 3.3594 22 6 0.2190 3.1319 3.0400 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.7670 1.6223 -2.0682 29 1 2.2005 3.1040 -1.1823 30 1 4.0725 3.3758 -4.3421 31 1 3.3168 -0.2101 2.0461 32 1 2.9178 -1.3579 4.1840 33 1 1.2964 -0.4440 5.7927 34 1 0.7337 3.9868 3.4784 35 1 0.1616 3.2576 1.9588 36 1 -0.7879 3.0637 3.4518 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088441024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:43 Heat of formation + Delta-G solvation = -28.721520 kcal Electronic energy + Delta-G solvation = -19903.264737 eV Core-core repulsion = 16818.802745 eV Total energy + Delta-G solvation = -3084.461992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53943 -39.45697 -37.07856 -34.96612 -34.15737 -33.19358 -31.67238 -30.70695 -29.07152 -27.97772 -25.60805 -24.67001 -23.41822 -22.50577 -20.24978 -18.64771 -18.12469 -17.50761 -17.04248 -16.95249 -16.33520 -15.57845 -15.36385 -15.09515 -14.62958 -14.60675 -14.24700 -14.17404 -13.68475 -13.46711 -13.30385 -13.23331 -13.12010 -12.80325 -12.62015 -12.53347 -12.28225 -12.19164 -12.02177 -11.77624 -11.71229 -11.16059 -10.73893 -10.65008 -9.91293 -9.70020 -9.46273 -8.23205 -6.38736 -0.13338 0.08864 0.55396 1.37062 1.41476 1.48643 1.74332 2.21842 2.39871 2.56526 3.06609 3.47180 3.68538 3.89727 3.95160 4.11845 4.26672 4.36678 4.48257 4.54035 4.58349 4.58804 4.63763 4.88416 4.91177 5.00389 5.06680 5.12441 5.18504 5.26314 5.29423 5.31711 5.54698 5.69917 5.81961 6.03507 6.64555 6.71619 7.22354 7.37892 8.83999 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.026204 B = 0.003500 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.265788 B = 7998.395906 C = 8117.793474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.261 3.739 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.547 3.453 14 O -0.587 6.587 15 C -0.128 4.128 16 C -0.077 4.077 17 C -0.106 4.106 18 C -0.064 4.064 19 C -0.105 4.105 20 Br -0.035 7.035 21 C -0.029 4.029 22 C -0.118 4.118 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.024 0.976 29 H -0.002 1.002 30 H 0.268 0.732 31 H 0.139 0.861 32 H 0.177 0.823 33 H 0.168 0.832 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 -11.294 20.189 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.029 4.029 3 N -0.322 5.322 4 C 0.140 3.860 5 C -0.584 4.584 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.336 3.664 14 O -0.469 6.469 15 C -0.132 4.132 16 C -0.096 4.096 17 C -0.125 4.125 18 C -0.083 4.083 19 C -0.184 4.184 20 Br 0.050 6.950 21 C -0.032 4.032 22 C -0.175 4.175 23 H 0.115 0.885 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.042 0.958 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.195 0.805 33 H 0.185 0.815 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.178 -10.345 20.432 24.672 hybrid contribution 1.133 0.508 -1.208 1.732 sum -8.045 -9.836 19.224 23.045 Atomic orbital electron populations 1.22120 0.94853 1.03483 1.01216 1.21933 0.95202 0.81527 1.04219 1.48200 1.62434 1.15006 1.06587 1.18778 0.94881 0.92122 0.80177 1.21667 0.96042 1.33930 1.06754 0.92474 1.25868 1.03086 0.94357 0.95696 1.70052 1.38363 1.35500 1.12848 0.85457 0.78788 0.79202 0.77316 1.18179 1.20448 1.20311 1.18753 0.76907 0.86023 0.84716 1.90720 1.50339 1.17895 1.87912 1.19771 1.01097 0.98018 0.94347 1.21573 0.97490 0.92138 0.98404 1.21463 0.98032 1.01213 0.91774 1.21628 0.93317 0.92693 1.00706 1.21711 1.01951 1.00072 0.94696 1.96669 1.56046 1.86729 1.55507 1.19751 0.95137 0.96142 0.92150 1.20923 1.00413 0.94482 1.01683 0.88486 0.93335 0.93903 0.90126 0.88298 0.95813 0.98419 0.92362 0.84285 0.80543 0.81470 0.90543 0.93543 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 10.20 71.98 0.73 -3.59 16 2 C 0.09 2.99 5.89 86.38 0.51 3.50 16 3 N -0.59 -25.97 2.47 -829.58 -2.05 -28.02 16 4 C 0.26 14.33 5.18 85.63 0.44 14.77 16 5 C -0.55 -31.38 9.39 25.60 0.24 -31.13 16 6 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 7 C 0.01 0.53 5.46 84.66 0.46 0.99 16 8 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.55 24.23 6.01 86.79 0.52 24.75 16 14 O -0.59 -31.81 15.51 -3.86 -0.06 -31.87 16 15 C -0.13 -4.25 4.87 -20.09 -0.10 -4.34 16 16 C -0.08 -1.94 7.60 22.53 0.17 -1.77 16 17 C -0.11 -1.81 10.03 22.23 0.22 -1.59 16 18 C -0.06 -1.10 9.78 22.34 0.22 -0.88 16 19 C -0.10 -2.40 6.21 22.28 0.14 -2.26 16 20 Br -0.04 -0.69 31.88 -20.37 -0.65 -1.34 16 21 C -0.03 -0.86 5.91 -19.59 -0.12 -0.98 16 22 C -0.12 -3.65 8.70 71.24 0.62 -3.03 16 23 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.05 1.35 8.03 -2.39 -0.02 1.33 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 2.64 8.03 -2.39 -0.02 2.62 16 27 H 0.10 2.60 4.49 -2.39 -0.01 2.59 16 28 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 29 H 0.00 -0.15 7.35 -2.39 -0.02 -0.16 16 30 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.14 3.41 7.32 -2.91 -0.02 3.39 16 32 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.69 6.57 -2.39 -0.02 1.68 16 36 H 0.09 2.37 6.89 -2.39 -0.02 2.36 16 Total: -1.00 -73.42 322.64 4.71 -68.71 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.08 Total: 7.55 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.07 Total: -5.56 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -1.76 Total: -84.06 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.06 Total: -31.87 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.65 Total: -1.34 kcal Total: -73.42 4.71 -68.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088441024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.988 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds