Wall clock time and date at job start Tue Mar 31 2020 14:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 N 1.46506 * 109.47240 * 179.97438 * 3 2 1 5 5 C 1.36871 * 120.00148 * 269.99881 * 4 3 2 6 6 H 1.08001 * 119.99404 * 18.94575 * 5 4 3 7 7 C 1.39041 * 120.00232 * 198.94570 * 5 4 3 8 8 N 1.31364 * 119.99837 * 15.47762 * 7 5 4 9 9 Si 1.86795 * 120.00196 * 195.47651 * 7 5 4 10 10 H 1.48504 * 109.47025 * 89.99804 * 9 7 5 11 11 H 1.48496 * 109.47519 * 209.99851 * 9 7 5 12 12 H 1.48503 * 109.47072 * 330.00219 * 9 7 5 13 13 C 1.34776 * 119.99666 * 90.00230 * 4 3 2 14 14 O 1.21597 * 119.99572 * 242.70781 * 13 4 3 15 15 C 1.47724 * 120.00488 * 62.70907 * 13 4 3 16 16 C 1.39672 * 120.14679 * 22.08689 * 15 13 4 17 17 C 1.37918 * 119.86862 * 179.97438 * 16 15 13 18 18 C 1.38385 * 120.16201 * 359.74720 * 17 16 15 19 19 C 1.38444 * 120.29319 * 0.51101 * 18 17 16 20 20 Br 1.89097 * 119.93254 * 179.76592 * 19 18 17 21 21 C 1.38048 * 120.13331 * 359.48707 * 19 18 17 22 22 C 1.50696 * 120.08812 * 180.23387 * 21 19 18 23 23 H 1.08995 * 109.47189 * 299.99813 * 1 2 3 24 24 H 1.08999 * 109.47028 * 60.00053 * 1 2 3 25 25 H 1.09005 * 109.46835 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47189 * 240.00187 * 2 1 3 27 27 H 1.08999 * 109.47028 * 119.99947 * 2 1 3 28 28 H 1.09004 * 109.47270 * 59.99959 * 3 2 1 29 29 H 1.08999 * 109.47187 * 299.99850 * 3 2 1 30 30 H 0.97004 * 119.99868 * 184.94838 * 8 7 5 31 31 H 1.07999 * 120.06454 * 0.02562 * 16 15 13 32 32 H 1.07995 * 119.91954 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.85390 * 180.27817 * 18 17 16 34 34 H 1.09000 * 109.47324 * 95.60195 * 22 21 19 35 35 H 1.08999 * 109.47389 * 215.60814 * 22 21 19 36 36 H 1.09005 * 109.46853 * 335.60818 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1889 1.4428 1.1862 6 1 3.6923 1.1392 2.0960 7 6 5.5228 1.8338 1.2194 8 7 6.0422 2.4835 0.2026 9 14 6.5762 1.4353 2.7096 10 1 7.2262 0.1140 2.5173 11 1 7.6183 2.4805 2.8730 12 1 5.7215 1.3944 3.9233 13 6 4.1793 1.4425 -1.1663 14 8 4.9016 0.5066 -1.4510 15 6 4.0410 2.5792 -2.0995 16 6 3.6177 3.8247 -1.6300 17 6 3.4910 4.8822 -2.5063 18 6 3.7873 4.7132 -3.8474 19 6 4.2023 3.4803 -4.3210 20 35 4.5982 3.2592 -6.1568 21 6 4.3334 2.4135 -3.4547 22 6 4.7903 1.0733 -3.9703 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.9893 2.6932 0.1939 31 1 3.3907 3.9595 -0.5828 32 1 3.1634 5.8454 -2.1442 33 1 3.6907 5.5459 -4.5284 34 1 5.8661 0.9755 -3.8248 35 1 4.2765 0.2804 -3.4268 36 1 4.5588 0.9945 -5.0326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088441036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:51 Heat of formation + Delta-G solvation = 1.063548 kcal Electronic energy + Delta-G solvation = -20327.391022 eV Core-core repulsion = 17244.220608 eV Total energy + Delta-G solvation = -3083.170415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.49837 -37.61473 -35.16464 -33.06406 -32.46998 -31.51825 -30.91355 -28.98004 -26.53800 -25.87026 -24.55422 -22.57332 -21.00458 -20.83155 -19.41481 -17.17941 -15.92496 -15.54652 -15.03329 -14.77048 -14.50878 -13.91494 -13.81165 -13.57865 -13.39471 -12.89266 -12.69673 -11.98461 -11.80100 -11.71033 -11.61383 -11.42281 -11.21465 -11.14143 -10.91818 -10.84924 -10.71971 -10.47076 -10.37986 -10.23023 -10.06929 -9.75646 -9.03003 -8.46103 -8.19400 -8.15565 -7.41033 -6.20354 -3.62612 1.49849 1.70457 1.96332 3.26117 3.34611 3.36231 3.66276 4.25446 4.46799 4.84617 5.20870 5.25831 5.30052 5.50055 5.59477 5.61643 5.75761 5.78574 5.94526 6.00643 6.16495 6.17276 6.26742 6.30851 6.31916 6.37024 6.48527 6.66038 6.71298 6.74837 6.88659 6.96136 7.09996 7.33599 7.52922 8.07631 8.96791 9.24782 9.50390 9.96903 10.92275 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.004969 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.603373 B = 5633.021021 C = 6451.551254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.133 3.867 4 N -0.547 5.547 5 C -0.289 4.289 6 H 0.084 0.916 7 C 0.026 3.974 8 N -0.880 5.880 9 Si 0.917 3.083 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.620 3.380 14 O -0.516 6.516 15 C -0.085 4.085 16 C -0.037 4.037 17 C -0.141 4.141 18 C -0.087 4.087 19 C -0.108 4.108 20 Br -0.069 7.069 21 C -0.022 4.022 22 C -0.115 4.115 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.269 0.731 31 H 0.136 0.864 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 3.774 -9.056 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.008 3.992 4 N -0.275 5.275 5 C -0.416 4.416 6 H 0.102 0.898 7 C -0.177 4.177 8 N -0.521 5.521 9 Si 0.744 3.256 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.411 3.589 14 O -0.391 6.391 15 C -0.091 4.091 16 C -0.056 4.056 17 C -0.160 4.160 18 C -0.107 4.107 19 C -0.187 4.187 20 Br 0.016 6.984 21 C -0.025 4.025 22 C -0.171 4.171 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.595 3.314 -9.907 12.354 hybrid contribution 0.735 0.149 1.222 1.433 sum -5.861 3.463 -8.685 11.035 Atomic orbital electron populations 1.21707 0.96505 1.00922 1.01278 1.22018 0.94380 0.99355 1.02372 1.21128 0.82736 0.94793 1.00525 1.42494 1.02373 1.78513 1.04138 1.19212 0.94984 1.41714 0.85655 0.89814 1.25044 0.98384 0.95772 0.98496 1.69367 1.13211 1.37123 1.32416 0.86086 0.79976 0.78124 0.81366 1.20802 1.21367 1.19987 1.17177 0.78426 0.83575 0.79686 1.90499 1.39150 1.35640 1.73791 1.20543 0.99376 0.96803 0.92352 1.21486 0.92621 0.91398 1.00088 1.21021 1.03052 0.99244 0.92717 1.20998 0.98537 0.95128 0.96087 1.21455 1.10662 0.96860 0.89692 1.96532 1.94185 1.97900 1.09759 1.19929 0.95146 0.95221 0.92222 1.20997 1.02744 0.93541 0.99806 0.92947 0.93175 0.93321 0.92624 0.91688 0.91988 0.93402 0.91979 0.84637 0.85713 0.85849 0.90287 0.90003 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.57 16 2 C -0.14 -2.44 6.26 -26.73 -0.17 -2.61 16 3 C 0.13 2.53 5.33 -4.04 -0.02 2.50 16 4 N -0.55 -13.04 1.98 -115.92 -0.23 -13.27 16 5 C -0.29 -7.47 9.62 -15.00 -0.14 -7.62 16 6 H 0.08 2.08 7.88 -52.49 -0.41 1.66 16 7 C 0.03 0.68 5.13 -17.45 -0.09 0.59 16 8 N -0.88 -24.48 11.08 55.50 0.61 -23.87 16 9 Si 0.92 21.25 29.58 -169.99 -5.03 16.22 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.62 15.41 3.59 -12.39 -0.04 15.37 16 14 O -0.52 -14.27 14.39 5.28 0.08 -14.20 16 15 C -0.09 -1.87 5.17 -104.97 -0.54 -2.41 16 16 C -0.04 -0.73 9.01 -39.16 -0.35 -1.08 16 17 C -0.14 -2.31 10.03 -39.64 -0.40 -2.70 16 18 C -0.09 -1.38 9.78 -39.45 -0.39 -1.77 16 19 C -0.11 -1.87 6.21 -39.58 -0.25 -2.12 16 20 Br -0.07 -1.01 31.68 -68.01 -2.15 -3.16 16 21 C -0.02 -0.45 5.92 -104.18 -0.62 -1.06 16 22 C -0.11 -2.20 8.26 36.00 0.30 -1.90 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 29 H 0.05 0.85 7.35 -51.93 -0.38 0.47 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.14 2.79 7.73 -52.49 -0.41 2.38 16 32 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.08 1.69 6.31 -51.93 -0.33 1.36 16 36 H 0.06 0.99 6.39 -51.93 -0.33 0.65 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -29.30 321.22 -9.02 -38.31 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.80 Total: 1.49 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.34 Total: -6.37 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.39 Total: -37.13 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -2.15 Total: -3.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.30 -9.02 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088441036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.378 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds