Wall clock time and date at job start Tue Mar 31 2020 14:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 N 1.46506 * 109.47240 * 179.97438 * 3 2 1 5 5 C 1.36871 * 120.00148 * 269.99881 * 4 3 2 6 6 H 1.08001 * 119.99404 * 18.94575 * 5 4 3 7 7 C 1.39041 * 120.00232 * 198.94570 * 5 4 3 8 8 N 1.31364 * 119.99837 * 15.47762 * 7 5 4 9 9 Si 1.86795 * 120.00196 * 195.47651 * 7 5 4 10 10 H 1.48504 * 109.47025 * 89.99804 * 9 7 5 11 11 H 1.48496 * 109.47519 * 209.99851 * 9 7 5 12 12 H 1.48503 * 109.47072 * 330.00219 * 9 7 5 13 13 C 1.34776 * 119.99666 * 90.00230 * 4 3 2 14 14 O 1.21597 * 119.99572 * 242.70781 * 13 4 3 15 15 C 1.47724 * 120.00488 * 62.70907 * 13 4 3 16 16 C 1.39672 * 120.14679 * 22.08689 * 15 13 4 17 17 C 1.37918 * 119.86862 * 179.97438 * 16 15 13 18 18 C 1.38385 * 120.16201 * 359.74720 * 17 16 15 19 19 C 1.38444 * 120.29319 * 0.51101 * 18 17 16 20 20 Br 1.89097 * 119.93254 * 179.76592 * 19 18 17 21 21 C 1.38048 * 120.13331 * 359.48707 * 19 18 17 22 22 C 1.50696 * 120.08812 * 180.23387 * 21 19 18 23 23 H 1.08995 * 109.47189 * 299.99813 * 1 2 3 24 24 H 1.08999 * 109.47028 * 60.00053 * 1 2 3 25 25 H 1.09005 * 109.46835 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47189 * 240.00187 * 2 1 3 27 27 H 1.08999 * 109.47028 * 119.99947 * 2 1 3 28 28 H 1.09004 * 109.47270 * 59.99959 * 3 2 1 29 29 H 1.08999 * 109.47187 * 299.99850 * 3 2 1 30 30 H 0.97004 * 119.99868 * 184.94838 * 8 7 5 31 31 H 1.07999 * 120.06454 * 0.02562 * 16 15 13 32 32 H 1.07995 * 119.91954 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.85390 * 180.27817 * 18 17 16 34 34 H 1.09000 * 109.47324 * 95.60195 * 22 21 19 35 35 H 1.08999 * 109.47389 * 215.60814 * 22 21 19 36 36 H 1.09005 * 109.46853 * 335.60818 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1889 1.4428 1.1862 6 1 3.6923 1.1392 2.0960 7 6 5.5228 1.8338 1.2194 8 7 6.0422 2.4835 0.2026 9 14 6.5762 1.4353 2.7096 10 1 7.2262 0.1140 2.5173 11 1 7.6183 2.4805 2.8730 12 1 5.7215 1.3944 3.9233 13 6 4.1793 1.4425 -1.1663 14 8 4.9016 0.5066 -1.4510 15 6 4.0410 2.5792 -2.0995 16 6 3.6177 3.8247 -1.6300 17 6 3.4910 4.8822 -2.5063 18 6 3.7873 4.7132 -3.8474 19 6 4.2023 3.4803 -4.3210 20 35 4.5982 3.2592 -6.1568 21 6 4.3334 2.4135 -3.4547 22 6 4.7903 1.0733 -3.9703 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.9893 2.6932 0.1939 31 1 3.3907 3.9595 -0.5828 32 1 3.1634 5.8454 -2.1442 33 1 3.6907 5.5459 -4.5284 34 1 5.8661 0.9755 -3.8248 35 1 4.2765 0.2804 -3.4268 36 1 4.5588 0.9945 -5.0326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088441036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:51 Heat of formation + Delta-G solvation = -13.460775 kcal Electronic energy + Delta-G solvation = -20328.020844 eV Core-core repulsion = 17244.220608 eV Total energy + Delta-G solvation = -3083.800236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13382 -39.23612 -36.91137 -34.72346 -33.95847 -33.03762 -32.56716 -30.38119 -28.04181 -27.51317 -26.24017 -24.14114 -22.44230 -22.29854 -21.14680 -18.93922 -17.58118 -17.18573 -16.69077 -16.39502 -16.09620 -15.60542 -15.37536 -15.08689 -14.95677 -14.23507 -14.08851 -13.64211 -13.45307 -13.20266 -13.16939 -12.93494 -12.88657 -12.68863 -12.58878 -12.40901 -12.21382 -12.06768 -11.99897 -11.73800 -11.53104 -11.04089 -10.93700 -10.33642 -9.69430 -9.54414 -9.29869 -8.20398 -5.64335 0.02508 0.26408 0.63134 1.39181 1.45626 1.51921 1.99123 2.39340 2.85581 3.14867 3.25028 3.87343 3.95661 4.12627 4.14111 4.29478 4.35576 4.43349 4.57449 4.68459 4.71812 4.74187 4.76582 4.83039 4.91286 5.10596 5.19714 5.22166 5.27374 5.32741 5.45261 5.47284 5.54015 5.62499 5.89963 6.10646 6.99087 7.35935 7.65410 8.04769 8.90008 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.004969 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.603373 B = 5633.021021 C = 6451.551254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C 0.131 3.869 4 N -0.563 5.563 5 C -0.295 4.295 6 H 0.089 0.911 7 C -0.026 4.026 8 N -0.906 5.906 9 Si 0.974 3.026 10 H -0.296 1.296 11 H -0.288 1.288 12 H -0.255 1.255 13 C 0.618 3.382 14 O -0.563 6.563 15 C -0.116 4.116 16 C -0.047 4.047 17 C -0.129 4.129 18 C -0.072 4.072 19 C -0.113 4.113 20 Br -0.039 7.039 21 C -0.042 4.042 22 C -0.103 4.103 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.259 0.741 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 5.604 -9.860 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.008 3.992 4 N -0.291 5.291 5 C -0.422 4.422 6 H 0.107 0.893 7 C -0.225 4.225 8 N -0.548 5.548 9 Si 0.800 3.200 10 H -0.223 1.223 11 H -0.214 1.214 12 H -0.179 1.179 13 C 0.412 3.588 14 O -0.442 6.442 15 C -0.121 4.121 16 C -0.066 4.066 17 C -0.147 4.147 18 C -0.092 4.092 19 C -0.192 4.192 20 Br 0.046 6.954 21 C -0.045 4.045 22 C -0.160 4.160 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.180 5.155 -10.698 14.420 hybrid contribution 1.151 -0.402 1.357 1.824 sum -7.029 4.753 -9.341 12.620 Atomic orbital electron populations 1.21633 0.92880 1.02314 1.02556 1.21934 0.97453 0.97628 1.00513 1.21337 0.80180 0.96134 1.01595 1.42709 1.04217 1.78706 1.03466 1.19514 0.95423 1.40700 0.86613 0.89281 1.25814 0.99582 0.96197 1.00918 1.69516 1.12559 1.38655 1.34105 0.85187 0.78536 0.76794 0.79452 1.22323 1.21393 1.17920 1.17766 0.77168 0.83632 0.80209 1.90457 1.40998 1.37551 1.75163 1.20359 1.02338 0.96561 0.92809 1.21441 0.93397 0.91725 1.00014 1.21397 1.01270 0.99591 0.92444 1.21477 0.95893 0.95379 0.96418 1.21678 1.09832 0.96688 0.91040 1.96556 1.94041 1.97913 1.06873 1.20020 0.96044 0.96209 0.92181 1.20847 1.01098 0.93128 1.00914 0.91493 0.92029 0.91922 0.94795 0.93265 0.90779 0.92232 0.93025 0.86200 0.81846 0.81936 0.92279 0.92246 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.14 -4.71 6.26 30.59 0.19 -4.52 16 3 C 0.13 5.00 5.33 86.38 0.46 5.46 16 4 N -0.56 -27.61 1.98 -638.93 -1.26 -28.88 16 5 C -0.30 -15.62 9.62 84.10 0.81 -14.81 16 6 H 0.09 4.47 7.88 -2.91 -0.02 4.45 16 7 C -0.03 -1.43 5.13 84.96 0.44 -1.00 16 8 N -0.91 -52.10 11.08 21.68 0.24 -51.86 16 9 Si 0.97 44.61 29.58 68.60 2.03 46.64 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 13 C 0.62 32.01 3.59 86.75 0.31 32.33 16 14 O -0.56 -33.01 14.39 -4.02 -0.06 -33.07 16 15 C -0.12 -5.16 5.17 -20.09 -0.10 -5.26 16 16 C -0.05 -1.82 9.01 22.54 0.20 -1.61 16 17 C -0.13 -3.80 10.03 22.23 0.22 -3.58 16 18 C -0.07 -2.01 9.78 22.35 0.22 -1.79 16 19 C -0.11 -3.70 6.21 22.27 0.14 -3.56 16 20 Br -0.04 -1.05 31.68 -20.37 -0.65 -1.69 16 21 C -0.04 -1.67 5.92 -19.58 -0.12 -1.79 16 22 C -0.10 -4.10 8.26 71.23 0.59 -3.51 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.07 2.61 8.04 -2.39 -0.02 2.59 16 29 H 0.06 2.11 7.35 -2.39 -0.02 2.09 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.12 4.98 7.73 -2.91 -0.02 4.96 16 32 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.06 2.59 6.31 -2.39 -0.02 2.58 16 36 H 0.08 2.79 6.39 -2.38 -0.02 2.78 16 Total: -1.00 -66.32 321.22 5.45 -60.87 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.07 Total: 14.27 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.07 Total: -6.27 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.02 Total: -80.74 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.06 Total: -33.07 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 35 Polarization: -1.05 SS G_CDS: -0.65 Total: -1.69 kcal Total: -66.32 5.45 -60.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088441036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.410 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds