Wall clock time and date at job start Tue Mar 31 2020 14:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47055 * 2 1 4 4 C 1.46497 * 120.00157 * 274.97521 * 3 2 1 5 5 C 1.50709 * 109.47069 * 270.00032 * 4 3 2 6 6 H 1.07996 * 119.99596 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99870 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47098 * 60.00489 * 9 7 5 11 11 H 1.48505 * 109.46830 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46960 * 299.99772 * 9 7 5 13 13 C 1.34779 * 120.00288 * 94.97597 * 3 2 1 14 14 O 1.21555 * 120.00330 * 185.68275 * 13 3 2 15 15 C 1.47793 * 119.99347 * 5.40457 * 13 3 2 16 16 C 1.39613 * 120.15412 * 55.33228 * 15 13 3 17 17 C 1.37912 * 119.86295 * 179.73777 * 16 15 13 18 18 C 1.50698 * 119.91275 * 180.27795 * 17 16 15 19 19 C 1.38413 * 120.16916 * 0.51173 * 17 16 15 20 20 C 1.38290 * 120.31380 * 359.76581 * 19 17 16 21 21 C 1.38104 * 120.13115 * 359.97438 * 20 19 17 22 22 Br 1.89107 * 120.08466 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47339 * 299.99825 * 1 2 3 24 24 H 1.09001 * 109.47443 * 60.00029 * 1 2 3 25 25 H 1.09006 * 109.46806 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47339 * 240.00175 * 2 1 3 27 27 H 1.09001 * 109.47443 * 119.99970 * 2 1 3 28 28 H 1.09004 * 109.47156 * 29.99714 * 4 3 2 29 29 H 1.09003 * 109.47536 * 150.00140 * 4 3 2 30 30 H 0.97000 * 119.99838 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.06994 * 359.97438 * 16 15 13 32 32 H 1.08999 * 109.47137 * 270.23154 * 18 17 16 33 33 H 1.08991 * 109.47289 * 30.23351 * 18 17 16 34 34 H 1.09002 * 109.47081 * 150.23993 * 18 17 16 35 35 H 1.08001 * 119.84309 * 179.74227 * 19 17 16 36 36 H 1.07998 * 119.92958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1587 2.1085 -1.2639 5 6 3.5415 1.8861 -1.8205 6 1 4.2453 1.2654 -1.2860 7 6 3.9078 2.4749 -3.0121 8 7 3.0509 3.2312 -3.6628 9 14 5.6220 2.1998 -3.7017 10 1 5.8333 0.7492 -3.9386 11 1 5.7643 2.9370 -4.9830 12 1 6.6312 2.6952 -2.7315 13 6 2.3384 1.9829 1.1628 14 8 2.6444 3.1592 1.1744 15 6 2.3113 1.2138 2.4245 16 6 3.0546 0.0381 2.5453 17 6 3.0292 -0.6720 3.7273 18 6 3.8360 -1.9378 3.8610 19 6 2.2610 -0.2276 4.7894 20 6 1.5175 0.9329 4.6757 21 6 1.5377 1.6568 3.4997 22 35 0.5200 3.2431 3.3453 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.4176 1.7457 -1.9762 29 1 2.0042 3.1733 -1.0895 30 1 3.3089 3.6458 -4.5010 31 1 3.6512 -0.3126 1.7161 32 1 3.2325 -2.7884 3.5443 33 1 4.7252 -1.8698 3.2345 34 1 4.1336 -2.0708 4.9012 35 1 2.2417 -0.7900 5.7112 36 1 0.9199 1.2738 5.5082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130648924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:20 Heat of formation + Delta-G solvation = -9.404108 kcal Electronic energy + Delta-G solvation = -19866.491328 eV Core-core repulsion = 16782.867002 eV Total energy + Delta-G solvation = -3083.624326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.06773 -38.15688 -35.31643 -33.37304 -32.82684 -31.28060 -30.33154 -30.05121 -27.15086 -26.45980 -24.10134 -23.14047 -22.26790 -21.27990 -18.57714 -16.79582 -16.39626 -16.15836 -15.74087 -15.52793 -14.50548 -14.24409 -13.92071 -13.90126 -13.29944 -13.19690 -13.00191 -12.63081 -12.49724 -12.18120 -12.00522 -11.81803 -11.47630 -11.23140 -11.18065 -10.91338 -10.78500 -10.57076 -10.41692 -10.13883 -10.02678 -9.62848 -9.09836 -8.82930 -8.51595 -8.42454 -7.64460 -6.03926 -4.09202 0.92770 1.12244 1.77033 3.21199 3.31462 3.36328 3.39192 3.63598 3.89789 4.43809 4.63667 4.73727 4.81333 5.06479 5.17226 5.30269 5.38278 5.42830 5.44714 5.48785 5.68628 5.77671 5.83319 5.85152 6.02898 6.10947 6.15203 6.27738 6.36415 6.54683 6.68679 7.07896 7.46819 7.53742 7.92133 8.22991 8.38283 8.87178 9.04000 9.55687 11.03986 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.005142 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.122569 B = 5444.319941 C = 6435.456428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.586 5.586 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.544 3.456 14 O -0.515 6.515 15 C -0.077 4.077 16 C -0.088 4.088 17 C -0.078 4.078 18 C -0.115 4.115 19 C -0.109 4.109 20 C -0.093 4.093 21 C -0.063 4.063 22 Br -0.035 7.035 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.138 0.862 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.131 0.869 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -9.954 17.225 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.317 5.317 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.329 3.671 14 O -0.391 6.391 15 C -0.082 4.082 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.172 4.172 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.144 4.144 22 Br 0.051 6.949 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.552 -8.588 16.944 19.791 hybrid contribution 1.140 -0.501 -0.446 1.323 sum -4.412 -9.088 16.498 19.345 Atomic orbital electron populations 1.22165 0.96622 1.01290 1.02399 1.21640 0.93958 0.84268 1.02847 1.48152 1.62447 1.13473 1.07637 1.19306 0.96784 0.93245 0.77848 1.21386 0.98522 1.30800 1.06046 0.92544 1.24922 0.97453 0.94887 0.96705 1.69925 1.34993 1.31886 1.16377 0.86573 0.84533 0.78173 0.78232 1.20247 1.21143 1.20186 1.17995 0.79209 0.86883 0.83056 1.90799 1.47451 1.14863 1.85973 1.20231 0.97304 0.95572 0.95096 1.21221 0.98667 0.92935 0.97896 1.19957 0.97432 0.97145 0.93304 1.20824 0.99311 0.94189 1.02853 1.21091 0.96823 0.96119 0.98756 1.21013 0.99507 0.94865 0.95955 1.21831 1.00774 0.95523 0.96257 1.96758 1.68688 1.30864 1.98548 0.93088 0.91969 0.92278 0.90056 0.91020 0.94819 0.93573 0.92637 0.84394 0.90731 0.91063 0.91300 0.85137 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.10 1.63 5.96 -4.04 -0.02 1.60 16 3 N -0.59 -12.68 2.46 -176.19 -0.43 -13.11 16 4 C 0.25 6.50 5.23 -5.19 -0.03 6.47 16 5 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.54 11.88 6.44 -12.35 -0.08 11.80 16 14 O -0.51 -13.33 15.53 5.32 0.08 -13.25 16 15 C -0.08 -1.33 4.90 -104.94 -0.51 -1.84 16 16 C -0.09 -1.26 7.14 -39.19 -0.28 -1.54 16 17 C -0.08 -0.87 5.87 -104.68 -0.61 -1.48 16 18 C -0.12 -0.92 10.01 36.00 0.36 -0.56 16 19 C -0.11 -1.12 9.69 -39.50 -0.38 -1.50 16 20 C -0.09 -1.12 9.78 -39.61 -0.39 -1.51 16 21 C -0.06 -0.99 6.25 -39.10 -0.24 -1.23 16 22 Br -0.03 -0.57 31.86 -68.01 -2.17 -2.73 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 27 H 0.07 1.05 4.43 -51.93 -0.23 0.82 16 28 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.05 1.38 7.35 -51.93 -0.38 0.99 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.14 1.94 7.59 -52.48 -0.40 1.54 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -32.77 326.85 -8.88 -41.66 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.77 Total: -2.99 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.23 Total: -5.43 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.30 Total: -38.94 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.17 Total: -2.73 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.77 -8.88 -41.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130648924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.251 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds