Wall clock time and date at job start Tue Mar 31 2020 14:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47055 * 2 1 4 4 C 1.46497 * 120.00157 * 274.97521 * 3 2 1 5 5 C 1.50709 * 109.47069 * 270.00032 * 4 3 2 6 6 H 1.07996 * 119.99596 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99870 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47098 * 60.00489 * 9 7 5 11 11 H 1.48505 * 109.46830 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46960 * 299.99772 * 9 7 5 13 13 C 1.34779 * 120.00288 * 94.97597 * 3 2 1 14 14 O 1.21555 * 120.00330 * 185.68275 * 13 3 2 15 15 C 1.47793 * 119.99347 * 5.40457 * 13 3 2 16 16 C 1.39613 * 120.15412 * 55.33228 * 15 13 3 17 17 C 1.37912 * 119.86295 * 179.73777 * 16 15 13 18 18 C 1.50698 * 119.91275 * 180.27795 * 17 16 15 19 19 C 1.38413 * 120.16916 * 0.51173 * 17 16 15 20 20 C 1.38290 * 120.31380 * 359.76581 * 19 17 16 21 21 C 1.38104 * 120.13115 * 359.97438 * 20 19 17 22 22 Br 1.89107 * 120.08466 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47339 * 299.99825 * 1 2 3 24 24 H 1.09001 * 109.47443 * 60.00029 * 1 2 3 25 25 H 1.09006 * 109.46806 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47339 * 240.00175 * 2 1 3 27 27 H 1.09001 * 109.47443 * 119.99970 * 2 1 3 28 28 H 1.09004 * 109.47156 * 29.99714 * 4 3 2 29 29 H 1.09003 * 109.47536 * 150.00140 * 4 3 2 30 30 H 0.97000 * 119.99838 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.06994 * 359.97438 * 16 15 13 32 32 H 1.08999 * 109.47137 * 270.23154 * 18 17 16 33 33 H 1.08991 * 109.47289 * 30.23351 * 18 17 16 34 34 H 1.09002 * 109.47081 * 150.23993 * 18 17 16 35 35 H 1.08001 * 119.84309 * 179.74227 * 19 17 16 36 36 H 1.07998 * 119.92958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1587 2.1085 -1.2639 5 6 3.5415 1.8861 -1.8205 6 1 4.2453 1.2654 -1.2860 7 6 3.9078 2.4749 -3.0121 8 7 3.0509 3.2312 -3.6628 9 14 5.6220 2.1998 -3.7017 10 1 5.8333 0.7492 -3.9386 11 1 5.7643 2.9370 -4.9830 12 1 6.6312 2.6952 -2.7315 13 6 2.3384 1.9829 1.1628 14 8 2.6444 3.1592 1.1744 15 6 2.3113 1.2138 2.4245 16 6 3.0546 0.0381 2.5453 17 6 3.0292 -0.6720 3.7273 18 6 3.8360 -1.9378 3.8610 19 6 2.2610 -0.2276 4.7894 20 6 1.5175 0.9329 4.6757 21 6 1.5377 1.6568 3.4997 22 35 0.5200 3.2431 3.3453 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.4176 1.7457 -1.9762 29 1 2.0042 3.1733 -1.0895 30 1 3.3089 3.6458 -4.5010 31 1 3.6512 -0.3126 1.7161 32 1 3.2325 -2.7884 3.5443 33 1 4.7252 -1.8698 3.2345 34 1 4.1336 -2.0708 4.9012 35 1 2.2417 -0.7900 5.7112 36 1 0.9199 1.2738 5.5082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130648924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:20 Heat of formation + Delta-G solvation = -28.709824 kcal Electronic energy + Delta-G solvation = -19867.328487 eV Core-core repulsion = 16782.867002 eV Total energy + Delta-G solvation = -3084.461485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40797 -39.52477 -37.03717 -34.94161 -34.34212 -32.49984 -31.61453 -31.38049 -29.08025 -27.32360 -25.70530 -24.72751 -23.55985 -22.50959 -20.03735 -18.64769 -18.15543 -17.46419 -17.08424 -16.86656 -16.33715 -15.54241 -15.33467 -14.83977 -14.64862 -14.55195 -14.19035 -14.16584 -13.68031 -13.45018 -13.33646 -13.13246 -13.06912 -12.77452 -12.58706 -12.49572 -12.21940 -12.17622 -12.01465 -11.75958 -11.54782 -11.25826 -10.67259 -10.64918 -10.01278 -9.55334 -9.45560 -8.22889 -6.38486 -0.15869 0.11864 0.63156 1.35998 1.40787 1.47942 1.76419 2.21349 2.39962 2.55805 3.06562 3.47646 3.74094 3.88602 4.08257 4.19548 4.22212 4.37271 4.41983 4.56363 4.68108 4.84216 4.90023 4.91114 4.92157 5.00242 5.07960 5.11617 5.20714 5.28180 5.31365 5.47583 5.54942 5.78694 5.82629 6.04070 6.64721 6.71899 7.23025 7.38668 8.84302 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.005142 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.122569 B = 5444.319941 C = 6435.456428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.591 5.591 4 C 0.264 3.736 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.540 3.460 14 O -0.572 6.572 15 C -0.105 4.105 16 C -0.098 4.098 17 C -0.065 4.065 18 C -0.115 4.115 19 C -0.089 4.089 20 C -0.087 4.087 21 C -0.080 4.080 22 Br -0.059 7.059 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.023 0.977 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.178 0.822 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.357 -13.439 19.546 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.029 4.029 3 N -0.321 5.321 4 C 0.143 3.857 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.327 3.673 14 O -0.452 6.452 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.066 4.066 18 C -0.171 4.171 19 C -0.107 4.107 20 C -0.106 4.106 21 C -0.161 4.161 22 Br 0.027 6.973 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.041 0.959 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.195 0.805 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.629 -12.129 19.280 23.244 hybrid contribution 0.824 0.511 -1.066 1.441 sum -3.805 -11.618 18.214 21.936 Atomic orbital electron populations 1.22097 0.94972 1.03387 1.01159 1.21927 0.95292 0.81673 1.04057 1.48142 1.62604 1.15098 1.06292 1.18735 0.96036 0.91078 0.79848 1.21658 0.99192 1.31007 1.06455 0.92585 1.25876 1.01848 0.94338 0.96993 1.70060 1.37198 1.32667 1.16821 0.85456 0.78791 0.79133 0.77372 1.18155 1.20366 1.20338 1.18747 0.77517 0.86583 0.84441 1.90744 1.49842 1.17544 1.87070 1.19843 1.00738 0.97154 0.93257 1.21270 0.98531 0.92384 0.99525 1.20346 0.96798 0.97527 0.91886 1.20931 0.98905 0.92708 1.04544 1.21634 0.94271 0.94926 0.99889 1.21383 0.99458 0.94789 0.94989 1.21968 1.01343 0.95443 0.97332 1.96724 1.69170 1.32730 1.98679 0.93534 0.93987 0.88391 0.90336 0.88184 0.95897 0.98459 0.92377 0.84845 0.88909 0.91330 0.88825 0.80497 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 10.24 71.98 0.74 -3.89 16 2 C 0.09 3.12 5.96 86.38 0.51 3.64 16 3 N -0.59 -26.85 2.46 -829.62 -2.04 -28.89 16 4 C 0.26 14.82 5.23 85.64 0.45 15.27 16 5 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 6 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 9 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.54 24.75 6.44 86.77 0.56 25.31 16 14 O -0.57 -31.74 15.53 -3.89 -0.06 -31.80 16 15 C -0.10 -3.63 4.90 -20.07 -0.10 -3.73 16 16 C -0.10 -2.63 7.14 22.52 0.16 -2.47 16 17 C -0.07 -1.18 5.87 -19.90 -0.12 -1.30 16 18 C -0.11 -1.24 10.01 71.24 0.71 -0.53 16 19 C -0.09 -1.36 9.69 22.32 0.22 -1.15 16 20 C -0.09 -1.78 9.78 22.25 0.22 -1.57 16 21 C -0.08 -2.45 6.25 22.58 0.14 -2.31 16 22 Br -0.06 -1.98 31.86 -20.37 -0.65 -2.63 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 27 H 0.10 2.81 4.43 -2.39 -0.01 2.80 16 28 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 29 H 0.00 -0.18 7.35 -2.39 -0.02 -0.19 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.13 3.62 7.59 -2.91 -0.02 3.60 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.09 0.62 8.08 -2.39 -0.02 0.60 16 35 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -77.22 326.85 4.83 -72.39 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.08 Total: 3.98 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 4.19 Total: -3.44 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.75 Total: -85.72 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.06 Total: -31.80 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 35 Polarization: -1.98 SS G_CDS: -0.65 Total: -2.63 kcal Total: -77.22 4.83 -72.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130648924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.679 kcal (2) G-P(sol) polarization free energy of solvation -77.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds