Wall clock time and date at job start Tue Mar 31 2020 15:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.50702 * 109.47413 * 314.30418 * 13 12 11 15 15 C 1.38231 * 120.41229 * 90.00101 * 14 13 12 16 16 N 1.31853 * 120.78442 * 180.02562 * 15 14 13 17 17 C 1.31882 * 121.73403 * 359.97438 * 16 15 14 18 18 C 1.38279 * 120.75289 * 359.97438 * 17 16 15 19 19 Br 1.89100 * 120.42965 * 180.02562 * 18 17 16 20 20 C 1.38610 * 120.41080 * 269.72463 * 14 13 12 21 21 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 22 22 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 23 23 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 25 25 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 26 26 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 27 27 H 1.08995 * 109.42457 * 173.94854 * 11 10 9 28 28 H 1.09004 * 109.47199 * 74.30771 * 13 12 11 29 29 H 1.09004 * 109.47300 * 194.30103 * 13 12 11 30 30 H 1.07995 * 119.60995 * 359.97438 * 15 14 13 31 31 H 1.08003 * 119.62433 * 180.02562 * 17 16 15 32 32 H 1.08004 * 120.79537 * 359.97438 * 20 14 13 33 33 H 1.09001 * 109.49186 * 303.14219 * 21 12 11 34 34 H 1.08999 * 109.49207 * 183.06673 * 21 12 11 35 35 H 1.09004 * 109.62440 * 350.90141 * 22 9 7 36 36 H 1.09004 * 109.62726 * 111.47314 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.3366 -5.5388 -3.7920 15 6 -0.2468 -4.7306 -4.9099 16 7 -1.2710 -4.5959 -5.7293 17 6 -2.4136 -5.2205 -5.5200 18 6 -2.5773 -6.0466 -4.4232 19 35 -4.2193 -6.9383 -4.1324 20 6 -1.5195 -6.2164 -3.5413 21 6 2.0102 -4.6146 -1.0325 22 6 1.8303 -3.6617 0.1539 23 1 -0.4851 0.8399 0.0004 24 1 -0.6867 -2.6167 -0.7035 25 1 0.0888 -1.3354 -1.6717 26 1 1.2942 -3.0054 -3.0036 27 1 -0.4378 -3.4179 -3.0099 28 1 1.7652 -5.5694 -3.4236 29 1 0.8161 -6.6739 -2.4001 30 1 0.6729 -4.2027 -5.1141 31 1 -3.2304 -5.0859 -6.2137 32 1 -1.6168 -6.8584 -2.6783 33 1 2.8259 -4.2606 -1.6630 34 1 2.2420 -5.6141 -0.6644 35 1 2.7815 -3.5379 0.6717 36 1 1.0868 -4.0673 0.8400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135451166.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:34 Heat of formation + Delta-G solvation = 75.118137 kcal Electronic energy + Delta-G solvation = -19724.817286 eV Core-core repulsion = 16677.150871 eV Total energy + Delta-G solvation = -3047.666415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.049 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.55958 -38.06264 -34.88349 -33.25937 -32.57566 -30.89074 -30.00294 -29.60366 -27.45011 -25.00470 -23.82414 -22.76815 -22.55806 -21.23125 -19.13039 -17.27013 -16.90630 -16.65803 -15.46228 -15.34147 -14.61073 -14.28649 -14.02755 -13.93469 -13.51048 -13.30849 -13.15203 -13.05180 -12.89833 -11.98227 -11.65436 -11.56266 -11.36385 -11.08280 -10.77171 -10.62310 -10.53063 -10.36897 -10.11431 -9.85442 -9.74771 -9.62926 -9.58085 -8.96262 -8.52278 -7.89954 -6.69671 -5.79479 -3.21007 0.71419 1.02728 1.34611 3.37077 3.44187 3.45580 3.47340 4.24166 4.39726 4.49401 4.54907 4.63676 4.78462 4.93132 5.24471 5.36871 5.39772 5.50219 5.60906 5.73271 5.83160 5.87853 6.06369 6.08477 6.16319 6.26955 6.34407 6.48677 6.64504 6.88751 7.19782 7.47109 7.58934 7.65775 7.69357 7.79453 8.41587 9.19348 9.82819 10.41059 11.29265 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.003222 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.184048 B = 8686.889801 C = 8999.319885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.595 5.595 10 C 0.180 3.820 11 C 0.031 3.969 12 N -0.527 5.527 13 C 0.093 3.907 14 C -0.116 4.116 15 C 0.123 3.877 16 N -0.474 5.474 17 C 0.125 3.875 18 C -0.146 4.146 19 Br -0.040 7.040 20 C -0.029 4.029 21 C 0.045 3.955 22 C 0.148 3.852 23 H 0.254 0.746 24 H 0.026 0.974 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.457 -16.491 -10.422 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.318 5.318 10 C 0.054 3.946 11 C -0.098 4.098 12 N -0.252 5.252 13 C -0.035 4.035 14 C -0.119 4.119 15 C -0.035 4.035 16 N -0.182 5.182 17 C -0.034 4.034 18 C -0.227 4.227 19 Br 0.045 6.955 20 C -0.056 4.056 21 C -0.085 4.085 22 C 0.022 3.978 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.107 0.893 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.177 0.823 31 H 0.179 0.821 32 H 0.164 0.836 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.449 -16.235 -10.699 20.485 hybrid contribution 1.250 0.759 0.147 1.470 sum -5.199 -15.476 -10.552 19.439 Atomic orbital electron populations 1.70027 1.05234 1.25522 1.53926 1.25020 0.95279 0.98373 1.00941 0.86281 0.79152 0.83785 0.77601 1.21495 1.21729 1.20400 1.19212 0.92717 0.84864 1.41550 0.91558 1.44152 1.34410 1.01213 1.52065 1.20939 0.88942 0.96594 0.88167 1.23101 0.98551 0.89200 0.98917 1.62184 1.34953 1.05918 1.22147 1.21071 0.93091 0.97736 0.91579 1.20886 0.96556 0.97613 0.96886 1.22912 0.97320 0.93715 0.89572 1.67858 0.99850 1.20781 1.29730 1.22801 0.95542 0.90908 0.94149 1.22937 0.94318 1.04348 1.01132 1.96729 1.25625 1.76531 1.96631 1.21459 0.90527 0.96634 0.97023 1.22659 0.89269 0.99618 0.96919 1.20974 0.97882 0.86489 0.92488 0.93582 0.95626 0.89350 0.95518 0.92214 0.93819 0.89907 0.82316 0.82066 0.83638 0.95159 0.91829 0.92470 0.95638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 11.16 55.49 0.62 -25.73 16 2 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.96 9.63 -15.06 -0.15 -7.11 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -14.96 3.03 -171.74 -0.52 -15.49 16 10 C 0.18 4.35 5.45 -3.36 -0.02 4.34 16 11 C 0.03 0.60 4.80 -3.46 -0.02 0.58 16 12 N -0.53 -8.85 4.77 -235.46 -1.12 -9.97 16 13 C 0.09 1.20 5.45 -4.98 -0.03 1.17 16 14 C -0.12 -1.48 4.14 -104.49 -0.43 -1.91 16 15 C 0.12 1.61 8.94 -17.54 -0.16 1.45 16 16 N -0.47 -6.45 10.36 -13.23 -0.14 -6.58 16 17 C 0.12 1.50 10.95 -17.51 -0.19 1.31 16 18 C -0.15 -1.71 6.25 -39.37 -0.25 -1.96 16 19 Br -0.04 -0.41 33.74 -68.01 -2.29 -2.70 16 20 C -0.03 -0.35 9.63 -39.25 -0.38 -0.72 16 21 C 0.04 0.75 5.58 -3.70 -0.02 0.73 16 22 C 0.15 3.08 6.69 -3.61 -0.02 3.06 16 23 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 2.39 6.11 -51.93 -0.32 2.07 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.10 5.54 -51.93 -0.29 0.81 16 28 H 0.04 0.53 8.03 -51.93 -0.42 0.11 16 29 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 30 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.16 1.56 8.06 -52.48 -0.42 1.13 16 32 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -29.92 313.17 -10.29 -40.22 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.78 Total: -2.04 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.74 Total: 0.92 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -1.16 Total: -57.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.29 Total: -2.70 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.92 -10.29 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135451166.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.334 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds