Wall clock time and date at job start Tue Mar 31 2020 14:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46967 * 2 1 4 4 N 1.46501 * 109.46900 * 173.42241 * 3 2 1 5 5 C 1.36878 * 120.00335 * 77.75129 * 4 3 2 6 6 H 1.07995 * 119.99964 * 180.02562 * 5 4 3 7 7 C 1.39039 * 119.99582 * 0.03865 * 5 4 3 8 8 N 1.31363 * 120.00363 * 8.84381 * 7 5 4 9 9 Si 1.86804 * 119.99685 * 188.84579 * 7 5 4 10 10 H 1.48500 * 109.47408 * 89.99828 * 9 7 5 11 11 H 1.48500 * 109.47054 * 209.99799 * 9 7 5 12 12 H 1.48500 * 109.47387 * 329.99688 * 9 7 5 13 13 C 1.34781 * 119.99882 * 257.75355 * 4 3 2 14 14 O 1.21595 * 120.00116 * 181.20318 * 13 4 3 15 15 C 1.47686 * 119.99911 * 1.19783 * 13 4 3 16 16 C 1.39697 * 120.13696 * 36.27182 * 15 13 4 17 17 C 1.37867 * 119.85430 * 180.02562 * 16 15 13 18 18 C 1.38517 * 120.14326 * 359.97438 * 17 16 15 19 19 Br 1.89093 * 119.85921 * 180.28422 * 18 17 16 20 20 C 1.38471 * 120.28133 * 0.02562 * 18 17 16 21 21 C 1.50705 * 119.92816 * 180.02562 * 20 18 17 22 22 C 1.37908 * 120.14367 * 359.97438 * 20 18 17 23 23 H 1.08989 * 109.47160 * 60.00247 * 1 2 3 24 24 H 1.09008 * 109.46567 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46953 * 299.99534 * 1 2 3 26 26 H 1.08999 * 109.46713 * 240.00076 * 2 1 3 27 27 H 1.09003 * 109.47278 * 120.00245 * 2 1 3 28 28 H 1.08994 * 109.47203 * 53.42093 * 3 2 1 29 29 H 1.09005 * 109.47206 * 293.41890 * 3 2 1 30 30 H 0.97002 * 119.99809 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.07030 * 0.03719 * 16 15 13 32 32 H 1.07997 * 119.93150 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.46889 * 89.99965 * 21 20 18 34 34 H 1.08997 * 109.46924 * 209.99577 * 21 20 18 35 35 H 1.08996 * 109.47281 * 330.00289 * 21 20 18 36 36 H 1.08005 * 120.07397 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4964 1.4455 0.1582 5 6 4.3015 1.1514 -0.9090 6 1 5.3751 1.1532 -0.7922 7 6 3.7369 0.8506 -2.1435 8 7 2.4478 1.0163 -2.3342 9 14 4.8116 0.2106 -3.5309 10 1 4.8645 -1.2723 -3.4725 11 1 4.2411 0.6345 -4.8348 12 1 6.1835 0.7608 -3.3886 13 6 4.0437 1.7379 1.3547 14 8 5.2529 1.7618 1.4807 15 6 3.1747 2.0292 2.5128 16 6 1.9703 1.3407 2.6767 17 6 1.1633 1.6177 3.7596 18 6 1.5447 2.5760 4.6843 19 35 0.4356 2.9438 6.1709 20 6 2.7373 3.2619 4.5274 21 6 3.1448 4.3025 5.5386 22 6 3.5535 2.9942 3.4486 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5837 1.9892 0.8252 29 1 1.7760 1.9212 -0.9430 30 1 2.0539 0.8060 -3.1953 31 1 1.6721 0.5929 1.9568 32 1 0.2317 1.0865 3.8873 33 1 3.7299 3.8318 6.3287 34 1 3.7456 5.0690 5.0491 35 1 2.2538 4.7591 5.9693 36 1 4.4833 3.5302 3.3271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135489164.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:55 Heat of formation + Delta-G solvation = 0.331167 kcal Electronic energy + Delta-G solvation = -20078.545214 eV Core-core repulsion = 16995.343041 eV Total energy + Delta-G solvation = -3083.202173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39910 -39.46008 -37.47944 -34.79576 -33.53568 -33.29303 -33.03802 -30.56184 -28.27504 -27.35103 -26.50253 -24.07853 -22.86586 -22.36253 -20.89362 -19.00765 -18.02736 -17.66164 -16.72565 -16.50794 -16.00154 -15.58360 -15.39945 -15.25021 -14.90685 -14.53754 -14.03919 -13.82744 -13.51264 -13.33552 -13.20862 -13.05092 -12.88359 -12.55007 -12.44719 -12.21936 -12.17228 -12.11707 -11.93099 -11.70682 -11.47171 -11.08353 -10.85786 -10.52012 -9.91198 -9.75468 -9.55659 -8.12574 -5.93175 -0.22846 0.27218 0.56881 1.36585 1.42242 1.52901 1.91862 2.22764 2.62581 2.99339 3.13466 3.74719 3.79436 3.82280 4.20716 4.26560 4.34157 4.48798 4.53235 4.63253 4.66053 4.76106 4.83465 4.88722 5.05623 5.10908 5.18150 5.25494 5.29019 5.33749 5.38551 5.50367 5.70210 5.74105 5.83024 6.06919 6.54325 7.10731 7.40773 7.95951 8.59015 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.003825 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.216015 B = 7318.714129 C = 8200.305581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C 0.090 3.910 4 N -0.430 5.430 5 C -0.338 4.338 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.865 5.865 9 Si 0.991 3.009 10 H -0.271 1.271 11 H -0.266 1.266 12 H -0.280 1.280 13 C 0.446 3.554 14 O -0.645 6.645 15 C -0.098 4.098 16 C -0.121 4.121 17 C -0.086 4.086 18 C -0.093 4.093 19 Br -0.028 7.028 20 C -0.062 4.062 21 C -0.120 4.120 22 C -0.090 4.090 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.275 0.725 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 2.805 13.254 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C -0.032 4.032 4 N -0.144 5.144 5 C -0.466 4.466 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.504 5.504 9 Si 0.815 3.185 10 H -0.196 1.196 11 H -0.190 1.190 12 H -0.205 1.205 13 C 0.237 3.763 14 O -0.536 6.536 15 C -0.101 4.101 16 C -0.140 4.140 17 C -0.106 4.106 18 C -0.173 4.173 19 Br 0.057 6.943 20 C -0.064 4.064 21 C -0.176 4.176 22 C -0.110 4.110 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.087 0.913 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.730 2.929 13.628 17.591 hybrid contribution 1.216 -0.450 -1.294 1.832 sum -9.514 2.479 12.334 15.773 Atomic orbital electron populations 1.21591 0.93575 1.01868 1.02032 1.21774 0.96967 0.96631 0.99965 1.22705 0.77969 0.98457 1.04033 1.44015 1.07613 1.55406 1.07367 1.19755 0.91485 1.46134 0.89206 0.90737 1.25939 0.97675 0.96178 0.99716 1.69902 1.10647 1.44883 1.24926 0.84959 0.77838 0.78597 0.77104 1.19606 1.19035 1.20482 1.18569 0.87723 0.85791 0.84215 1.90542 1.16431 1.61356 1.85225 1.20180 0.95718 0.98586 0.95650 1.22241 0.92740 1.00387 0.98631 1.21258 1.00585 0.96520 0.92217 1.21995 0.96614 1.01984 0.96675 1.96624 1.64574 1.94732 1.38325 1.19920 0.92647 0.97803 0.96030 1.21034 1.03384 0.96263 0.96910 1.21060 0.99516 0.97115 0.93286 0.92715 0.91943 0.91847 0.92217 0.94578 0.92176 0.85833 0.91318 0.82691 0.82073 0.89334 0.90274 0.89371 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.82 71.98 0.71 -3.21 16 2 C -0.12 -4.50 4.65 30.60 0.14 -4.36 16 3 C 0.09 3.98 4.16 86.38 0.36 4.33 16 4 N -0.43 -22.59 2.66 -638.99 -1.70 -24.29 16 5 C -0.34 -19.00 9.47 84.10 0.80 -18.21 16 6 H 0.07 4.57 7.17 -2.91 -0.02 4.55 16 7 C 0.01 0.37 4.95 84.96 0.42 0.79 16 8 N -0.86 -41.25 7.85 21.68 0.17 -41.08 16 9 Si 0.99 40.94 29.56 68.60 2.03 42.97 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.45 23.59 7.33 86.74 0.64 24.23 16 14 O -0.64 -39.09 16.43 -4.01 -0.07 -39.16 16 15 C -0.10 -4.11 5.26 -20.09 -0.11 -4.21 16 16 C -0.12 -4.21 7.38 22.53 0.17 -4.05 16 17 C -0.09 -2.40 9.77 22.25 0.22 -2.18 16 18 C -0.09 -2.50 6.23 22.39 0.14 -2.36 16 19 Br -0.03 -0.58 31.76 -20.37 -0.65 -1.23 16 20 C -0.06 -1.80 5.88 -19.89 -0.12 -1.91 16 21 C -0.12 -2.57 9.54 71.24 0.68 -1.89 16 22 C -0.09 -3.30 9.26 22.53 0.21 -3.09 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16 25 H 0.06 1.60 7.95 -2.39 -0.02 1.58 16 26 H 0.06 2.67 6.20 -2.39 -0.01 2.65 16 27 H 0.04 1.40 6.40 -2.39 -0.02 1.39 16 28 H 0.06 2.42 4.82 -2.39 -0.01 2.41 16 29 H 0.12 5.95 5.37 -4.15 -0.02 5.92 16 30 H 0.28 12.22 8.31 -92.71 -0.77 11.45 16 31 H 0.16 5.42 2.82 -2.91 -0.01 5.41 16 32 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 35 H 0.09 1.65 6.63 -2.39 -0.02 1.63 16 36 H 0.12 4.70 8.02 -2.91 -0.02 4.67 16 Total: -1.00 -63.51 307.53 5.13 -58.38 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 1.10 Total: 20.54 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 4.25 Total: -16.12 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -1.53 Total: -65.38 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.07 Total: -39.16 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.65 Total: -1.23 kcal Total: -63.51 5.13 -58.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135489164.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.708 kcal (2) G-P(sol) polarization free energy of solvation -63.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds