Wall clock time and date at job start Tue Mar 31 2020 14:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.67845 * 2 1 4 4 C 1.53291 * 109.68198 * 120.55726 * 2 1 3 5 5 H 1.09006 * 109.51570 * 52.09923 * 4 2 1 6 6 C 1.50707 * 109.51279 * 291.95051 * 4 2 1 7 7 C 1.38237 * 119.98720 * 279.72227 * 6 4 2 8 8 C 1.38217 * 120.01076 * 179.76898 * 7 6 4 9 9 C 1.38325 * 119.98604 * 0.50582 * 8 7 6 10 10 Br 1.89098 * 120.01054 * 179.72386 * 9 8 7 11 11 C 1.38334 * 119.98184 * 359.75007 * 9 8 7 12 12 C 1.38212 * 119.98790 * 359.97438 * 11 9 8 13 13 O 1.42959 * 109.22558 * 172.02319 * 4 2 1 14 14 C 1.42959 * 114.16739 * 297.42031 * 13 4 2 15 15 C 1.52885 * 109.29873 * 62.44727 * 14 13 4 16 16 N 1.47149 * 109.68004 * 239.48319 * 2 1 3 17 17 C 1.36942 * 120.98252 * 9.72148 * 16 2 1 18 18 H 1.07998 * 119.99845 * 330.09322 * 17 16 2 19 19 C 1.38811 * 119.99873 * 150.09571 * 17 16 2 20 20 N 1.31616 * 119.99944 * 143.83678 * 19 17 16 21 21 Si 1.86799 * 120.00079 * 324.11251 * 19 17 16 22 22 H 1.48495 * 109.47347 * 274.47894 * 21 19 17 23 23 H 1.48500 * 109.47062 * 34.48309 * 21 19 17 24 24 H 1.48499 * 109.47065 * 154.47794 * 21 19 17 25 25 H 1.08998 * 109.47387 * 180.51540 * 1 2 3 26 26 H 1.08996 * 109.47304 * 300.51594 * 1 2 3 27 27 H 1.09007 * 109.47327 * 60.51405 * 1 2 3 28 28 H 1.08001 * 119.99178 * 0.02562 * 7 6 4 29 29 H 1.07993 * 120.00854 * 180.27674 * 8 7 6 30 30 H 1.07999 * 120.00512 * 180.02562 * 11 9 8 31 31 H 1.08001 * 119.99486 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.51761 * 182.49938 * 14 13 4 33 33 H 1.08999 * 109.51536 * 302.60490 * 14 13 4 34 34 H 1.08999 * 109.62050 * 188.11569 * 15 14 13 35 35 H 1.08997 * 109.52518 * 67.69821 * 15 14 13 36 36 H 0.96998 * 120.00002 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0463 -0.7338 1.2429 5 1 1.5747 -1.7143 1.3090 6 6 1.7158 0.0689 2.4749 7 6 2.5070 1.1450 2.8312 8 6 2.2017 1.8844 3.9583 9 6 1.1102 1.5410 4.7356 10 35 0.6964 2.5474 6.2822 11 6 0.3219 0.4608 4.3817 12 6 0.6247 -0.2745 3.2512 13 8 3.4635 -0.8916 1.1416 14 6 3.8859 -1.6896 0.0333 15 6 3.4629 -1.0097 -1.2691 16 7 2.0255 -0.7036 -1.1936 17 6 1.1734 -1.0677 -2.2018 18 1 0.1418 -1.2980 -1.9801 19 6 1.6355 -1.1409 -3.5087 20 7 1.1808 -2.0755 -4.3162 21 14 2.9085 0.0824 -4.1191 22 1 2.2254 1.3133 -4.5919 23 1 3.8363 0.4255 -3.0115 24 1 3.6758 -0.5191 -5.2391 25 1 -0.3634 -1.0276 0.0092 26 1 -0.3634 0.5218 0.8853 27 1 -0.3634 0.5059 -0.8946 28 1 3.3615 1.4105 2.2263 29 1 2.8172 2.7278 4.2341 30 1 -0.5306 0.1926 4.9881 31 1 0.0096 -1.1181 2.9750 32 1 4.9704 -1.7966 0.0539 33 1 3.4217 -2.6738 0.0954 34 1 3.6523 -1.6780 -2.1091 35 1 4.0284 -0.0870 -1.3987 36 1 1.5034 -2.1264 -5.2295 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152438329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:35 Heat of formation + Delta-G solvation = 15.018823 kcal Electronic energy + Delta-G solvation = -20073.708464 eV Core-core repulsion = 16991.143195 eV Total energy + Delta-G solvation = -3082.565268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.87865 -38.28003 -34.96053 -33.55370 -31.87359 -31.15257 -31.08742 -29.12955 -27.58955 -25.87545 -23.69850 -22.82102 -22.06304 -21.17107 -19.60980 -17.04552 -16.63650 -15.98972 -15.54878 -15.19272 -14.89292 -14.57846 -14.13572 -13.98075 -13.71869 -13.49195 -13.19093 -12.64905 -12.43201 -12.04673 -11.85497 -11.51060 -11.28873 -11.07592 -10.99445 -10.78061 -10.57659 -10.56703 -10.40002 -10.19575 -9.92977 -9.47014 -9.29971 -9.03277 -8.66376 -8.31214 -6.99822 -6.11914 -3.35079 1.03786 1.30084 1.52987 3.35789 3.47101 3.52673 3.55929 4.10546 4.50443 4.69263 4.76586 4.86493 5.06915 5.22354 5.34473 5.36455 5.50180 5.59612 5.68522 5.88135 5.89925 5.97313 6.00743 6.03506 6.14909 6.15640 6.26402 6.38075 6.43835 6.61500 6.69673 6.78351 6.83673 6.93455 7.62708 7.86145 8.24571 8.84982 9.64388 10.05344 11.02328 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.032070 B = 0.003152 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.875643 B = 8880.880027 C = 9036.850483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.149 3.851 3 H 0.037 0.963 4 C 0.115 3.885 5 H 0.069 0.931 6 C -0.047 4.047 7 C -0.088 4.088 8 C -0.094 4.094 9 C -0.095 4.095 10 Br -0.064 7.064 11 C -0.093 4.093 12 C -0.103 4.103 13 O -0.384 6.384 14 C 0.046 3.954 15 C 0.107 3.893 16 N -0.597 5.597 17 C -0.275 4.275 18 H 0.087 0.913 19 C 0.044 3.956 20 N -0.880 5.880 21 Si 0.831 3.169 22 H -0.290 1.290 23 H -0.253 1.253 24 H -0.296 1.296 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 6.505 20.165 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.055 0.945 4 C 0.056 3.944 5 H 0.086 0.914 6 C -0.048 4.048 7 C -0.107 4.107 8 C -0.114 4.114 9 C -0.174 4.174 10 Br 0.022 6.978 11 C -0.113 4.113 12 C -0.122 4.122 13 O -0.304 6.304 14 C -0.032 4.032 15 C -0.019 4.019 16 N -0.322 5.322 17 C -0.402 4.402 18 H 0.104 0.896 19 C -0.158 4.158 20 N -0.520 5.520 21 Si 0.658 3.342 22 H -0.217 1.217 23 H -0.178 1.178 24 H -0.223 1.223 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.450 6.861 20.676 21.790 hybrid contribution 0.647 0.402 -1.202 1.423 sum 1.097 7.264 19.474 20.814 Atomic orbital electron populations 1.21799 0.94652 1.02035 1.01061 1.21074 0.94321 0.93955 0.86350 0.94544 1.21490 0.82905 0.97699 0.92336 0.91351 1.19889 0.94579 0.95302 0.94995 1.21065 0.99493 0.94202 0.95959 1.21094 0.95786 0.99861 0.94641 1.21725 1.00597 0.99272 0.95812 1.96670 1.94270 1.71834 1.35069 1.21003 0.99051 0.94061 0.97159 1.21009 0.97313 1.00029 0.93859 1.87788 1.21084 1.72796 1.48702 1.23095 0.98837 0.93911 0.87367 1.21997 0.85704 0.98168 0.96010 1.44472 1.03669 1.65530 1.18509 1.18716 0.95275 1.41219 0.85029 0.89578 1.25279 0.97114 0.97411 0.95976 1.70088 1.45422 1.28848 1.07640 0.87723 0.82768 0.84478 0.79186 1.21717 1.17843 1.22296 0.92291 0.93641 0.91327 0.84645 0.85219 0.85106 0.84931 0.89541 0.93130 0.90572 0.94505 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.72 37.16 0.29 -2.17 16 2 C 0.15 2.89 3.12 -67.43 -0.21 2.68 16 3 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 4 C 0.11 1.95 2.44 -27.73 -0.07 1.88 16 5 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 6 C -0.05 -0.67 4.36 -104.62 -0.46 -1.13 16 7 C -0.09 -1.20 9.35 -39.59 -0.37 -1.57 16 8 C -0.09 -1.13 9.79 -39.56 -0.39 -1.52 16 9 C -0.09 -1.12 6.22 -39.51 -0.25 -1.37 16 10 Br -0.06 -0.66 33.70 -68.01 -2.29 -2.95 16 11 C -0.09 -1.07 9.79 -39.56 -0.39 -1.45 16 12 C -0.10 -1.29 8.88 -39.59 -0.35 -1.64 16 13 O -0.38 -6.83 9.69 -35.23 -0.34 -7.18 16 14 C 0.05 0.81 6.97 37.10 0.26 1.07 16 15 C 0.11 2.25 4.57 -3.74 -0.02 2.23 16 16 N -0.60 -13.64 2.72 -164.55 -0.45 -14.09 16 17 C -0.28 -7.27 8.88 -15.06 -0.13 -7.40 16 18 H 0.09 2.39 6.48 -52.49 -0.34 2.05 16 19 C 0.04 1.22 4.82 -17.43 -0.08 1.13 16 20 N -0.88 -25.78 13.97 55.49 0.78 -25.01 16 21 Si 0.83 20.61 26.90 -169.99 -4.57 16.03 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.25 -5.94 4.66 56.52 0.26 -5.68 16 24 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 25 H 0.06 1.07 7.61 -51.93 -0.40 0.68 16 26 H 0.04 0.69 6.96 -51.93 -0.36 0.32 16 27 H 0.07 1.33 7.55 -51.93 -0.39 0.94 16 28 H 0.14 1.86 7.76 -52.49 -0.41 1.45 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.70 6.31 -51.93 -0.33 1.38 16 35 H 0.04 0.80 6.42 -51.93 -0.33 0.46 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -28.87 306.74 -9.20 -38.08 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.78 Total: -0.23 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.17 Total: -9.27 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.33 Total: -39.10 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.34 Total: -7.18 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.57 Total: 16.03 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.29 Total: -2.95 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.87 -9.20 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152438329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.096 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds