Wall clock time and date at job start Tue Mar 31 2020 14:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47163 * 2 1 4 4 C 1.36937 * 120.00345 * 274.94391 * 3 2 1 5 5 H 1.07991 * 119.99890 * 56.11135 * 4 3 2 6 6 C 1.38814 * 119.99822 * 236.11402 * 4 3 2 7 7 N 1.31623 * 120.00161 * 10.67186 * 6 4 3 8 8 Si 1.86799 * 119.99776 * 190.66868 * 6 4 3 9 9 H 1.48492 * 109.47150 * 60.00410 * 8 6 4 10 10 H 1.48507 * 109.46658 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47038 * 299.99745 * 8 6 4 12 12 S 1.65608 * 119.99612 * 94.94343 * 3 2 1 13 13 O 1.42102 * 106.40134 * 156.46096 * 12 3 2 14 14 O 1.42094 * 106.40259 * 23.53839 * 12 3 2 15 15 C 1.76198 * 107.21626 * 269.99500 * 12 3 2 16 16 C 1.37977 * 120.07486 * 115.00009 * 15 12 3 17 17 C 1.38341 * 120.15240 * 179.97438 * 16 15 12 18 18 C 1.38379 * 120.30317 * 359.97438 * 17 16 15 19 19 C 1.37928 * 120.15723 * 0.04433 * 18 17 16 20 20 N 1.48005 * 120.08076 * 179.97438 * 19 18 17 21 21 O 1.21797 * 119.99609 * 359.97438 * 20 19 18 22 22 O 1.21796 * 119.99906 * 179.71854 * 20 19 18 23 23 C 1.39613 * 120.08244 * 295.26022 * 15 12 3 24 24 C 1.43200 * 120.14956 * 0.04368 * 23 15 12 25 25 N 4.83756 * 89.17025 * 349.38550 * 2 1 3 26 26 H 1.09005 * 109.47334 * 59.99477 * 1 2 3 27 27 H 1.08998 * 109.47383 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46936 * 300.00003 * 1 2 3 29 29 H 1.09000 * 109.46936 * 239.99997 * 2 1 3 30 30 H 1.08996 * 109.46964 * 120.00058 * 2 1 3 31 31 H 0.97000 * 120.00200 * 179.97438 * 7 6 4 32 32 H 1.07997 * 119.92357 * 359.96269 * 16 15 12 33 33 H 1.08001 * 119.84658 * 180.02562 * 17 16 15 34 34 H 1.07999 * 119.92519 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1503 2.0608 -1.1815 5 1 1.3013 2.1684 -1.8402 6 6 3.3752 2.6115 -1.5323 7 7 4.4550 2.3075 -0.8437 8 14 3.4913 3.7839 -2.9820 9 1 2.6251 4.9643 -2.7345 10 1 4.8987 4.2281 -3.1478 11 1 3.0428 3.0907 -4.2163 12 16 2.4109 2.1206 1.4289 13 8 3.3274 3.1573 1.1057 14 8 2.7073 1.0806 2.3507 15 6 0.9536 2.9125 2.0239 16 6 0.3678 2.4897 3.1994 17 6 -0.7761 3.1107 3.6682 18 6 -1.3403 4.1593 2.9632 19 6 -0.7653 4.5919 1.7865 20 7 -1.3705 5.7132 1.0335 21 8 -2.3777 6.2548 1.4527 22 8 -0.8587 6.0974 -0.0027 23 6 0.3860 3.9656 1.3042 24 6 0.9849 4.4054 0.0801 25 7 1.4600 4.7543 -0.8910 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.3110 2.6920 -1.0891 32 1 0.8031 1.6721 3.7546 33 1 -1.2303 2.7760 4.5891 34 1 -2.2331 4.6399 3.3351 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156744581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:08 Heat of formation + Delta-G solvation = 11.157394 kcal Electronic energy + Delta-G solvation = -26771.886742 eV Core-core repulsion = 22802.085079 eV Total energy + Delta-G solvation = -3969.801664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.061 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13458 -39.39481 -36.69367 -36.24228 -35.90225 -35.29966 -34.22479 -32.45646 -32.11705 -31.59688 -29.27805 -26.68225 -24.87945 -24.13863 -22.77072 -21.72598 -20.11415 -19.03844 -18.69965 -18.16519 -17.48148 -17.02401 -16.18692 -15.95251 -15.40708 -15.38584 -15.14149 -14.30500 -13.85193 -13.43371 -13.29334 -13.11633 -12.77381 -12.60368 -12.40222 -12.32752 -12.23816 -11.94401 -11.46454 -11.43392 -11.37474 -11.03727 -11.03023 -10.71420 -10.68409 -10.57927 -10.50734 -10.10479 -10.01435 -9.83467 -9.70548 -9.34176 -8.82644 -7.84525 -6.70169 -4.44960 -0.23017 0.43446 1.32320 1.39370 1.68824 2.87580 3.09320 3.26968 3.39225 3.47430 3.87474 3.92325 4.10917 4.27478 4.48731 4.67214 4.78936 4.82738 4.85978 5.10665 5.20386 5.50260 5.66403 5.69980 5.80799 5.84766 5.92702 6.12397 6.19596 6.30735 6.45498 6.49245 6.74486 7.16196 7.27336 7.71440 7.97371 8.09480 8.64571 9.07099 10.32150 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.007821 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.945455 B = 3579.263686 C = 4794.224230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.125 3.875 3 N -0.803 5.803 4 C -0.248 4.248 5 H 0.083 0.917 6 C 0.058 3.942 7 N -0.764 5.764 8 Si 0.907 3.093 9 H -0.220 1.220 10 H -0.285 1.285 11 H -0.275 1.275 12 S 2.501 3.499 13 O -0.927 6.927 14 O -1.008 7.008 15 C -0.622 4.622 16 C 0.005 3.995 17 C -0.124 4.124 18 C -0.034 4.034 19 C -0.041 4.041 20 N 0.029 4.971 21 O -0.162 6.162 22 O -0.148 6.148 23 C 0.156 3.844 24 C 0.201 3.799 25 N -0.298 5.298 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.285 0.715 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 -1.848 6.172 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.002 4.002 3 N -0.626 5.626 4 C -0.401 4.401 5 H 0.100 0.900 6 C -0.162 4.162 7 N -0.400 5.400 8 Si 0.731 3.269 9 H -0.143 1.143 10 H -0.210 1.210 11 H -0.200 1.200 12 S 2.597 3.403 13 O -0.915 6.915 14 O -0.997 6.997 15 C -0.695 4.695 16 C -0.014 4.014 17 C -0.144 4.144 18 C -0.053 4.053 19 C -0.127 4.127 20 N 0.549 4.451 21 O -0.377 6.377 22 O -0.364 6.364 23 C 0.151 3.849 24 C -0.115 4.115 25 N 0.026 4.974 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.830 -1.768 5.916 9.972 hybrid contribution -0.942 0.928 -0.060 1.323 sum -8.772 -0.840 5.856 10.580 Atomic orbital electron populations 1.22291 0.98249 1.01019 1.01642 1.21240 0.92407 0.83683 1.02906 1.52980 1.77133 1.14979 1.17506 1.19287 0.95159 1.32004 0.93678 0.89964 1.25910 0.94526 0.97264 0.98512 1.69768 0.99829 1.34797 1.35558 0.86335 0.78553 0.82813 0.79186 1.14339 1.21046 1.20035 1.14316 0.77377 0.74144 0.74482 1.93462 1.58134 1.58282 1.81574 1.93275 1.84412 1.56309 1.65726 1.33812 1.27483 1.05378 1.02808 1.21455 0.91959 0.95991 0.92017 1.21517 0.96496 0.95573 1.00815 1.21050 0.98976 0.94849 0.90447 1.21299 0.98948 0.94682 0.97726 1.43517 1.00002 1.00945 1.00657 1.94484 1.13925 1.57235 1.72031 1.94634 1.63866 1.66618 1.11312 1.15103 0.89585 0.91803 0.88453 1.24761 0.96106 0.97298 0.93321 1.81147 1.03882 1.04076 1.08340 0.92261 0.92485 0.93828 0.90155 0.90871 0.90437 0.82239 0.82934 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.21 37.16 0.38 -2.24 16 2 C 0.12 2.30 6.35 -4.04 -0.03 2.28 16 3 N -0.80 -17.93 2.65 -59.91 -0.16 -18.09 16 4 C -0.25 -5.87 6.19 -15.06 -0.09 -5.96 16 5 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 6 C 0.06 1.45 4.09 -17.43 -0.07 1.38 16 7 N -0.76 -20.39 11.15 55.49 0.62 -19.77 16 8 Si 0.91 20.26 27.68 -169.99 -4.71 15.55 16 9 H -0.22 -4.97 5.60 56.52 0.32 -4.65 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 12 S 2.50 57.93 4.89 -107.50 -0.53 57.40 16 13 O -0.93 -24.86 12.98 -57.17 -0.74 -25.60 16 14 O -1.01 -24.03 15.52 -57.17 -0.89 -24.92 16 15 C -0.62 -11.64 5.94 -39.16 -0.23 -11.87 16 16 C 0.00 0.07 9.54 -39.64 -0.38 -0.31 16 17 C -0.12 -1.34 10.04 -39.49 -0.40 -1.73 16 18 C -0.03 -0.41 9.54 -39.64 -0.38 -0.79 16 19 C -0.04 -0.66 6.88 -79.54 -0.55 -1.21 16 20 N 0.03 0.52 4.45 34.16 0.15 0.67 16 21 O -0.16 -2.65 18.45 -29.46 -0.54 -3.19 16 22 O -0.15 -2.93 16.37 -29.46 -0.48 -3.42 16 23 C 0.16 2.99 5.73 -106.93 -0.61 2.38 16 24 C 0.20 4.44 9.00 -22.47 -0.20 4.24 16 25 N -0.30 -7.00 12.82 41.84 0.54 -6.47 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 30 H 0.07 1.34 6.92 -51.93 -0.36 0.98 16 31 H 0.29 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.16 2.06 7.33 -52.49 -0.38 1.68 16 33 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.16 1.43 7.61 -52.49 -0.40 1.03 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -30.95 308.87 -7.53 -38.48 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -2.89 Total: -1.45 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.56 Total: -13.85 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 1.15 Total: -43.66 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -2.66 Total: -57.13 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.71 Total: 15.55 kcal Atomic # 16 Polarization: 57.93 SS G_CDS: -0.53 Total: 57.40 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.95 -7.53 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156744581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.638 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds