Wall clock time and date at job start Tue Mar 31 2020 14:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46899 * 2 1 4 4 C 1.37096 * 119.99981 * 96.71389 * 3 2 1 5 5 H 1.07999 * 120.00174 * 161.21581 * 4 3 2 6 6 C 1.38949 * 119.99922 * 341.21623 * 4 3 2 7 7 N 1.31407 * 120.00078 * 354.72924 * 6 4 3 8 8 Si 1.86806 * 119.99941 * 174.72978 * 6 4 3 9 9 H 1.48495 * 109.46975 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46819 * 119.99993 * 8 6 4 11 11 H 1.48499 * 109.47192 * 239.99829 * 8 6 4 12 12 C 1.34780 * 120.00034 * 276.70499 * 3 2 1 13 13 O 1.21287 * 119.99764 * 4.92825 * 12 3 2 14 14 C 1.50706 * 119.99805 * 184.91674 * 12 3 2 15 15 H 1.08995 * 109.47309 * 336.87519 * 14 12 3 16 16 C 1.52994 * 109.46695 * 96.87520 * 14 12 3 17 17 C 1.50700 * 109.47015 * 216.87436 * 14 12 3 18 18 C 1.38243 * 119.99109 * 120.00353 * 17 14 12 19 19 C 1.38213 * 120.01175 * 180.02562 * 18 17 14 20 20 C 1.38331 * 119.98739 * 359.97438 * 19 18 17 21 21 Br 1.89098 * 120.00653 * 180.02562 * 20 19 18 22 22 C 1.38326 * 119.98229 * 0.27902 * 20 19 18 23 23 C 1.38221 * 119.98842 * 359.46472 * 22 20 19 24 24 H 1.08997 * 109.46920 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46947 * 300.00241 * 1 2 3 26 26 H 1.09006 * 109.46989 * 60.00022 * 1 2 3 27 27 H 1.08999 * 109.46897 * 240.00545 * 2 1 3 28 28 H 1.08997 * 109.47207 * 120.00109 * 2 1 3 29 29 H 0.97008 * 120.00326 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47286 * 55.22406 * 16 14 12 31 31 H 1.09000 * 109.47574 * 175.22362 * 16 14 12 32 32 H 1.09001 * 109.47478 * 295.22432 * 16 14 12 33 33 H 1.08001 * 119.99073 * 0.02562 * 18 17 14 34 34 H 1.07998 * 120.00826 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.00122 * 179.70484 * 22 20 19 36 36 H 1.07998 * 119.99332 * 180.27526 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3777 1.9813 1.1791 5 1 3.0080 2.8582 1.1687 6 6 1.9309 1.4612 2.3877 7 7 1.0815 0.4586 2.3976 8 14 2.5377 2.1872 3.9983 9 1 3.4814 3.2985 3.7159 10 1 1.3822 2.7037 4.7749 11 1 3.2325 1.1363 4.7845 12 6 2.1144 2.0620 -1.1592 13 8 1.7135 1.5641 -2.1899 14 6 2.7198 3.4421 -1.1746 15 1 2.6425 3.8839 -0.1812 16 6 4.1927 3.3482 -1.5779 17 6 1.9814 4.3035 -2.1664 18 6 1.3452 5.4553 -1.7423 19 6 0.6673 6.2454 -2.6514 20 6 0.6260 5.8838 -3.9860 21 35 -0.3007 6.9647 -5.2304 22 6 1.2582 4.7284 -4.4090 23 6 1.9403 3.9417 -3.5000 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.7698 0.0952 3.2414 30 1 4.2756 2.8300 -2.5332 31 1 4.6085 4.3515 -1.6716 32 1 4.7436 2.7964 -0.8162 33 1 1.3780 5.7377 -0.7004 34 1 0.1708 7.1454 -2.3201 35 1 1.2220 4.4433 -5.4500 36 1 2.4377 3.0420 -3.8310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160090508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:49 Heat of formation + Delta-G solvation = -2.564721 kcal Electronic energy + Delta-G solvation = -19952.841264 eV Core-core repulsion = 16869.513516 eV Total energy + Delta-G solvation = -3083.327748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65844 -38.20099 -35.18790 -33.72235 -31.55434 -31.20997 -30.76274 -29.58909 -28.08926 -24.91857 -24.11308 -22.52223 -22.15250 -20.50080 -19.07822 -17.11227 -16.44199 -15.95690 -14.97808 -14.88566 -14.29062 -14.18676 -13.85579 -13.36043 -13.30211 -13.04937 -12.73343 -12.40477 -12.04884 -11.84318 -11.48479 -11.38806 -11.23734 -11.12835 -10.92142 -10.67288 -10.55635 -10.46010 -10.38134 -10.19185 -10.11451 -9.82060 -8.91318 -8.76216 -8.47055 -8.13402 -7.73699 -6.33354 -4.00606 1.35382 1.61576 1.75787 3.04741 3.15568 3.17879 3.75939 3.97017 4.02349 4.72295 4.99178 5.06450 5.12962 5.19123 5.58982 5.68468 5.78432 5.83647 5.85425 6.05734 6.23083 6.28583 6.39188 6.45630 6.47701 6.60240 6.63082 6.80035 6.90752 7.00641 7.05768 7.13047 7.28621 7.47900 7.78634 7.82349 8.40892 9.01644 9.49481 9.88439 10.59634 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.003414 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.259559 B = 8198.924389 C = 8491.192097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.138 3.862 3 N -0.439 5.439 4 C -0.331 4.331 5 H 0.099 0.901 6 C 0.033 3.967 7 N -0.866 5.866 8 Si 0.923 3.077 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.464 3.536 13 O -0.602 6.602 14 C -0.070 4.070 15 H 0.103 0.897 16 C -0.130 4.130 17 C -0.039 4.039 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.097 4.097 21 Br -0.071 7.071 22 C -0.099 4.099 23 C -0.076 4.076 24 H 0.030 0.970 25 H 0.085 0.915 26 H 0.025 0.975 27 H 0.029 0.971 28 H 0.102 0.898 29 H 0.267 0.733 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 10.601 -8.425 13.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 N -0.156 5.156 4 C -0.459 4.459 5 H 0.116 0.884 6 C -0.171 4.171 7 N -0.505 5.505 8 Si 0.750 3.250 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.252 3.748 13 O -0.488 6.488 14 C -0.092 4.092 15 H 0.121 0.879 16 C -0.188 4.188 17 C -0.039 4.039 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.176 4.176 21 Br 0.014 6.986 22 C -0.119 4.119 23 C -0.094 4.094 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.204 10.600 -9.202 14.038 hybrid contribution 0.282 0.035 1.293 1.323 sum 0.486 10.635 -7.909 13.263 Atomic orbital electron populations 1.22004 0.96994 0.99255 1.01453 1.21241 0.94435 0.82804 0.99980 1.43779 1.55122 1.11408 1.05276 1.19751 1.30198 1.12779 0.83126 0.88358 1.25311 0.95495 0.96654 0.99620 1.70098 1.29532 1.24338 1.26558 0.85913 0.78575 0.78909 0.81576 1.19347 1.20671 1.20619 1.19773 0.83930 0.86801 0.84302 1.90510 1.54648 1.70514 1.33177 1.20217 0.95184 0.94780 0.98969 0.87892 1.21628 0.93625 1.01563 1.01939 1.19836 0.95952 0.93881 0.94277 1.21109 0.97548 0.94619 0.99623 1.20949 0.99598 1.00145 0.91192 1.21654 1.04276 0.97956 0.93707 1.96618 1.75783 1.67874 1.58336 1.21071 0.97402 0.93211 1.00217 1.21202 0.97637 0.98248 0.92346 0.95072 0.89681 0.95628 0.95312 0.87996 0.92245 0.92404 0.92525 0.91670 0.85174 0.85521 0.85562 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.61 37.16 0.36 -2.93 16 2 C 0.14 3.36 5.19 -4.04 -0.02 3.34 16 3 N -0.44 -10.71 2.64 -114.81 -0.30 -11.01 16 4 C -0.33 -7.91 9.05 -14.93 -0.14 -8.04 16 5 H 0.10 2.19 5.94 -52.49 -0.31 1.87 16 6 C 0.03 0.78 5.25 -17.47 -0.09 0.69 16 7 N -0.87 -21.32 7.89 55.50 0.44 -20.89 16 8 Si 0.92 18.52 29.56 -169.99 -5.02 13.50 16 9 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 10 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 C 0.46 10.75 6.54 -10.98 -0.07 10.68 16 13 O -0.60 -15.16 14.14 5.55 0.08 -15.08 16 14 C -0.07 -1.32 2.37 -92.92 -0.22 -1.54 16 15 H 0.10 1.92 5.66 -51.93 -0.29 1.62 16 16 C -0.13 -2.08 8.92 37.15 0.33 -1.74 16 17 C -0.04 -0.68 4.73 -104.62 -0.49 -1.17 16 18 C -0.11 -1.72 9.67 -39.59 -0.38 -2.10 16 19 C -0.10 -1.43 9.79 -39.56 -0.39 -1.81 16 20 C -0.10 -1.42 6.22 -39.52 -0.25 -1.67 16 21 Br -0.07 -0.89 33.70 -68.01 -2.29 -3.19 16 22 C -0.10 -1.52 9.79 -39.56 -0.39 -1.90 16 23 C -0.08 -1.29 8.08 -39.58 -0.32 -1.61 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 2.15 6.18 -51.93 -0.32 1.83 16 26 H 0.02 0.62 7.91 -51.93 -0.41 0.20 16 27 H 0.03 0.69 7.71 -51.93 -0.40 0.29 16 28 H 0.10 2.57 5.91 -51.93 -0.31 2.26 16 29 H 0.27 6.25 8.31 -40.82 -0.34 5.92 16 30 H 0.06 0.93 7.56 -51.93 -0.39 0.53 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.13 1.82 7.95 -52.49 -0.42 1.40 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.14 2.48 6.70 -52.49 -0.35 2.13 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -26.62 314.81 -8.88 -35.50 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.45 Total: 6.23 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.07 Total: -9.81 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.13 Total: -31.90 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -2.29 Total: -3.19 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.62 -8.88 -35.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160090508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.937 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds