Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47044 * 2 1 4 4 C 1.46501 * 119.99945 * 274.97213 * 3 2 1 5 5 C 1.50698 * 109.46977 * 269.99704 * 4 3 2 6 6 H 1.08000 * 120.00223 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00163 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99853 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00322 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47097 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47274 * 120.00156 * 9 7 5 12 12 H 1.48505 * 109.47490 * 240.00376 * 9 7 5 13 13 C 1.34781 * 120.00250 * 94.97298 * 3 2 1 14 14 O 1.21557 * 120.00226 * 185.68267 * 13 3 2 15 15 C 1.47787 * 119.99641 * 5.40448 * 13 3 2 16 16 C 1.39626 * 120.15488 * 55.33323 * 15 13 3 17 17 C 1.37899 * 119.86199 * 180.02562 * 16 15 13 18 18 C 1.38413 * 120.17803 * 359.97438 * 17 16 15 19 19 C 1.38277 * 120.30802 * 0.02562 * 18 17 16 20 20 C 1.50708 * 119.93064 * 179.97438 * 19 18 17 21 21 C 1.38117 * 120.13966 * 359.71784 * 19 18 17 22 22 Br 1.89094 * 120.09436 * 180.27843 * 21 19 18 23 23 H 1.08997 * 109.47051 * 300.00241 * 1 2 3 24 24 H 1.09000 * 109.46662 * 60.00231 * 1 2 3 25 25 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47051 * 239.99759 * 2 1 3 27 27 H 1.09000 * 109.46662 * 119.99769 * 2 1 3 28 28 H 1.08993 * 109.47410 * 30.00135 * 4 3 2 29 29 H 1.08998 * 109.46871 * 150.00186 * 4 3 2 30 30 H 0.96999 * 120.00343 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.06270 * 359.97438 * 16 15 13 32 32 H 1.08002 * 119.90875 * 180.02562 * 17 16 15 33 33 H 1.08004 * 119.84552 * 180.02562 * 18 17 16 34 34 H 1.08994 * 109.47410 * 89.99939 * 20 19 18 35 35 H 1.09004 * 109.46481 * 209.99879 * 20 19 18 36 36 H 1.08999 * 109.47213 * 329.99603 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.1085 -1.2640 5 6 3.5416 1.8861 -1.8204 6 1 4.2452 1.2648 -1.2863 7 6 3.9081 2.4749 -3.0121 8 7 3.0511 3.2311 -3.6628 9 14 5.6217 2.1987 -3.7022 10 1 6.3875 1.3150 -2.7869 11 1 5.5201 1.5579 -5.0380 12 1 6.3199 3.5031 -3.8308 13 6 2.3384 1.9829 1.1628 14 8 2.6444 3.1593 1.1744 15 6 2.3113 1.2139 2.4246 16 6 3.0547 0.0382 2.5455 17 6 3.0246 -0.6749 3.7254 18 6 2.2603 -0.2278 4.7893 19 6 1.5214 0.9356 4.6774 20 6 0.6918 1.4143 5.8410 21 6 1.5463 1.6628 3.5034 22 35 0.5415 3.2578 3.3546 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.4179 1.7457 -1.9762 29 1 2.0044 3.1733 -1.0896 30 1 3.3090 3.6456 -4.5010 31 1 3.6512 -0.3124 1.7163 32 1 3.5996 -1.5843 3.8199 33 1 2.2410 -0.7903 5.7111 34 1 1.2924 2.0717 6.4695 35 1 -0.1753 1.9600 5.4687 36 1 0.3580 0.5574 6.4261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160801356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = -7.253095 kcal Electronic energy + Delta-G solvation = -19876.582403 eV Core-core repulsion = 16793.051352 eV Total energy + Delta-G solvation = -3083.531051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05356 -38.17311 -35.30716 -33.30420 -32.73411 -31.94987 -30.05284 -29.49022 -27.27441 -26.85187 -24.02453 -23.03719 -21.94966 -21.48294 -18.68946 -16.69502 -16.41828 -16.15351 -15.81417 -15.52228 -14.49014 -14.30481 -14.01842 -13.74034 -13.40960 -13.17024 -12.99500 -12.50510 -12.41527 -12.14305 -12.00600 -11.82303 -11.44839 -11.24223 -11.18711 -10.90472 -10.86233 -10.61034 -10.49394 -10.13367 -9.90878 -9.58706 -9.01444 -8.71930 -8.62726 -8.43119 -7.63938 -6.04192 -4.09229 0.95697 1.11077 1.77014 3.22700 3.29623 3.37458 3.40960 3.64643 3.90619 4.44067 4.62354 4.73298 4.89111 5.08226 5.19637 5.29774 5.36160 5.42224 5.46381 5.54718 5.64884 5.69459 5.83067 5.96491 6.08827 6.15384 6.22023 6.28107 6.30423 6.54902 6.69167 7.08065 7.46970 7.54237 7.92220 8.23038 8.38562 8.87665 9.04452 9.55812 11.03819 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.004733 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.716256 B = 5914.778688 C = 6443.089561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.586 5.586 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.544 3.456 14 O -0.515 6.515 15 C -0.077 4.077 16 C -0.094 4.094 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.065 4.065 20 C -0.122 4.122 21 C -0.060 4.060 22 Br -0.031 7.031 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 -8.704 17.998 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.317 5.317 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.329 3.671 14 O -0.391 6.391 15 C -0.083 4.083 16 C -0.113 4.113 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.068 4.068 20 C -0.179 4.179 21 C -0.140 4.140 22 Br 0.055 6.945 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.649 -7.335 17.727 20.304 hybrid contribution 1.240 -0.590 -0.528 1.472 sum -5.408 -7.925 17.198 19.694 Atomic orbital electron populations 1.22164 0.96644 1.01290 1.02372 1.21643 0.93942 0.84264 1.02876 1.48151 1.62445 1.13481 1.07632 1.19312 0.96825 0.93251 0.77869 1.21461 0.98517 1.30609 1.05996 0.92431 1.24927 0.97471 0.94904 0.96721 1.69944 1.34883 1.32035 1.16337 0.86454 0.84283 0.78066 0.78680 1.19816 1.20965 1.20863 1.17996 0.79197 0.86878 0.83064 1.90798 1.47472 1.14871 1.85991 1.20236 0.97382 0.95683 0.94965 1.21331 0.98357 0.93063 0.98551 1.21178 0.98640 0.99931 0.92747 1.21078 0.96938 0.95696 0.99127 1.19721 0.98174 0.94770 0.94089 1.20975 0.99533 1.01903 0.95498 1.21763 1.01300 0.95210 0.95769 1.96717 1.69554 1.29823 1.98389 0.93113 0.91984 0.92270 0.90052 0.90978 0.94816 0.93575 0.92756 0.84392 0.85018 0.85168 0.90472 0.90489 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.10 1.63 5.96 -4.04 -0.02 1.60 16 3 N -0.59 -12.69 2.46 -176.20 -0.43 -13.12 16 4 C 0.25 6.48 5.23 -5.19 -0.03 6.45 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 C 0.54 11.88 6.46 -12.35 -0.08 11.80 16 14 O -0.52 -13.33 15.49 5.32 0.08 -13.24 16 15 C -0.08 -1.34 4.90 -104.94 -0.51 -1.86 16 16 C -0.09 -1.33 7.49 -39.19 -0.29 -1.62 16 17 C -0.11 -1.16 10.03 -39.64 -0.40 -1.56 16 18 C -0.11 -1.13 9.69 -39.50 -0.38 -1.52 16 19 C -0.07 -0.80 5.88 -104.65 -0.61 -1.42 16 20 C -0.12 -1.15 9.54 36.01 0.34 -0.81 16 21 C -0.06 -0.94 6.25 -39.09 -0.24 -1.18 16 22 Br -0.03 -0.51 29.92 -68.01 -2.03 -2.54 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 27 H 0.07 1.05 4.43 -51.93 -0.23 0.82 16 28 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.05 1.38 7.35 -51.93 -0.38 0.99 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.14 1.91 7.59 -52.49 -0.40 1.51 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.76 6.65 -51.93 -0.35 0.42 16 36 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -32.90 323.60 -8.76 -41.66 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.70 Total: -2.88 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.27 Total: -5.72 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.30 Total: -38.95 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.03 Total: -2.54 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.90 -8.76 -41.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160801356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.409 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds