Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47044 * 2 1 4 4 C 1.46501 * 119.99945 * 274.97213 * 3 2 1 5 5 C 1.50698 * 109.46977 * 269.99704 * 4 3 2 6 6 H 1.08000 * 120.00223 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00163 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99853 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00322 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47097 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47274 * 120.00156 * 9 7 5 12 12 H 1.48505 * 109.47490 * 240.00376 * 9 7 5 13 13 C 1.34781 * 120.00250 * 94.97298 * 3 2 1 14 14 O 1.21557 * 120.00226 * 185.68267 * 13 3 2 15 15 C 1.47787 * 119.99641 * 5.40448 * 13 3 2 16 16 C 1.39626 * 120.15488 * 55.33323 * 15 13 3 17 17 C 1.37899 * 119.86199 * 180.02562 * 16 15 13 18 18 C 1.38413 * 120.17803 * 359.97438 * 17 16 15 19 19 C 1.38277 * 120.30802 * 0.02562 * 18 17 16 20 20 C 1.50708 * 119.93064 * 179.97438 * 19 18 17 21 21 C 1.38117 * 120.13966 * 359.71784 * 19 18 17 22 22 Br 1.89094 * 120.09436 * 180.27843 * 21 19 18 23 23 H 1.08997 * 109.47051 * 300.00241 * 1 2 3 24 24 H 1.09000 * 109.46662 * 60.00231 * 1 2 3 25 25 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47051 * 239.99759 * 2 1 3 27 27 H 1.09000 * 109.46662 * 119.99769 * 2 1 3 28 28 H 1.08993 * 109.47410 * 30.00135 * 4 3 2 29 29 H 1.08998 * 109.46871 * 150.00186 * 4 3 2 30 30 H 0.96999 * 120.00343 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.06270 * 359.97438 * 16 15 13 32 32 H 1.08002 * 119.90875 * 180.02562 * 17 16 15 33 33 H 1.08004 * 119.84552 * 180.02562 * 18 17 16 34 34 H 1.08994 * 109.47410 * 89.99939 * 20 19 18 35 35 H 1.09004 * 109.46481 * 209.99879 * 20 19 18 36 36 H 1.08999 * 109.47213 * 329.99603 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.1085 -1.2640 5 6 3.5416 1.8861 -1.8204 6 1 4.2452 1.2648 -1.2863 7 6 3.9081 2.4749 -3.0121 8 7 3.0511 3.2311 -3.6628 9 14 5.6217 2.1987 -3.7022 10 1 6.3875 1.3150 -2.7869 11 1 5.5201 1.5579 -5.0380 12 1 6.3199 3.5031 -3.8308 13 6 2.3384 1.9829 1.1628 14 8 2.6444 3.1593 1.1744 15 6 2.3113 1.2139 2.4246 16 6 3.0547 0.0382 2.5455 17 6 3.0246 -0.6749 3.7254 18 6 2.2603 -0.2278 4.7893 19 6 1.5214 0.9356 4.6774 20 6 0.6918 1.4143 5.8410 21 6 1.5463 1.6628 3.5034 22 35 0.5415 3.2578 3.3546 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.4179 1.7457 -1.9762 29 1 2.0044 3.1733 -1.0896 30 1 3.3090 3.6456 -4.5010 31 1 3.6512 -0.3124 1.7163 32 1 3.5996 -1.5843 3.8199 33 1 2.2410 -0.7903 5.7111 34 1 1.2924 2.0717 6.4695 35 1 -0.1753 1.9600 5.4687 36 1 0.3580 0.5574 6.4261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160801356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = -26.836102 kcal Electronic energy + Delta-G solvation = -19877.431586 eV Core-core repulsion = 16793.051352 eV Total energy + Delta-G solvation = -3084.380234 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.38572 -39.53049 -37.02647 -34.98893 -34.10896 -33.12170 -31.63710 -30.64234 -29.06097 -27.84844 -25.69135 -24.57548 -23.36343 -22.50728 -20.19360 -18.62700 -18.04810 -17.49311 -17.08410 -16.92202 -16.32393 -15.63069 -15.10996 -14.96571 -14.71050 -14.55097 -14.25380 -14.17322 -13.67885 -13.33952 -13.25908 -13.18592 -12.97903 -12.80779 -12.60250 -12.48796 -12.24480 -12.19719 -12.06929 -11.70630 -11.70169 -11.10507 -10.65999 -10.61731 -9.83722 -9.66700 -9.43524 -8.23099 -6.38475 -0.12632 0.13078 0.64755 1.36116 1.38742 1.50472 1.77943 2.22181 2.40423 2.59350 3.06565 3.49370 3.71417 3.97763 4.09320 4.19741 4.26422 4.36177 4.43201 4.57227 4.63836 4.78606 4.82715 4.87695 4.91495 5.01028 5.14328 5.19549 5.24105 5.31530 5.32127 5.38047 5.55624 5.79923 5.83432 6.04203 6.65523 6.72613 7.23578 7.39269 8.84528 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.004733 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.716256 B = 5914.778688 C = 6443.089561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.591 5.591 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.539 3.461 14 O -0.573 6.573 15 C -0.108 4.108 16 C -0.103 4.103 17 C -0.089 4.089 18 C -0.090 4.090 19 C -0.064 4.064 20 C -0.122 4.122 21 C -0.079 4.079 22 Br -0.056 7.056 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.023 0.977 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.136 0.864 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 -12.202 20.408 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.030 4.030 3 N -0.322 5.322 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.327 3.673 14 O -0.453 6.453 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.066 4.066 20 C -0.179 4.179 21 C -0.159 4.159 22 Br 0.030 6.970 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.041 0.959 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.192 0.808 33 H 0.195 0.805 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.700 -10.884 20.153 23.603 hybrid contribution 0.904 0.440 -1.172 1.544 sum -4.797 -10.445 18.981 22.189 Atomic orbital electron populations 1.22095 0.95057 1.03366 1.01084 1.21936 0.95230 0.81670 1.04147 1.48141 1.62624 1.15118 1.06279 1.18738 0.96066 0.91078 0.79884 1.21711 0.99156 1.30792 1.06388 0.92570 1.25879 1.01851 0.94357 0.97011 1.70072 1.37105 1.32819 1.16841 0.85335 0.78799 0.78014 0.78463 1.18828 1.19350 1.20885 1.18759 0.77486 0.86581 0.84458 1.90742 1.49868 1.17570 1.87091 1.19868 1.00934 0.97396 0.93071 1.21431 0.98109 0.92368 1.00346 1.21624 0.97781 1.00302 0.90974 1.21649 0.94401 0.94361 1.00461 1.20148 0.98280 0.94883 0.93334 1.21056 0.98818 1.03270 0.94740 1.21923 1.01951 0.95132 0.96913 1.96679 1.70077 1.31687 1.98527 0.93617 0.94041 0.88385 0.90323 0.88022 0.95926 0.98482 0.92401 0.84609 0.80822 0.80520 0.89721 0.91552 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 10.24 71.98 0.74 -3.90 16 2 C 0.09 3.10 5.96 86.38 0.51 3.62 16 3 N -0.59 -26.86 2.46 -829.64 -2.04 -28.89 16 4 C 0.26 14.79 5.23 85.63 0.45 15.24 16 5 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16 6 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 7 C 0.01 0.46 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 9 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.54 24.74 6.46 86.77 0.56 25.30 16 14 O -0.57 -31.78 15.49 -3.90 -0.06 -31.84 16 15 C -0.11 -3.72 4.90 -20.07 -0.10 -3.82 16 16 C -0.10 -2.70 7.49 22.52 0.17 -2.53 16 17 C -0.09 -1.48 10.03 22.23 0.22 -1.26 16 18 C -0.09 -1.36 9.69 22.32 0.22 -1.15 16 19 C -0.06 -1.37 5.88 -19.88 -0.12 -1.49 16 20 C -0.12 -1.89 9.54 71.24 0.68 -1.21 16 21 C -0.08 -2.42 6.25 22.59 0.14 -2.28 16 22 Br -0.06 -1.88 29.92 -20.37 -0.61 -2.49 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.66 8.11 -2.39 -0.02 2.65 16 27 H 0.10 2.82 4.43 -2.39 -0.01 2.81 16 28 H 0.02 1.29 8.07 -2.39 -0.02 1.28 16 29 H 0.00 -0.19 7.35 -2.39 -0.02 -0.21 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.14 3.53 7.59 -2.91 -0.02 3.51 16 32 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.20 6.65 -2.38 -0.02 1.18 16 36 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 Total: -1.00 -77.93 323.60 4.86 -73.07 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.08 Total: 3.80 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.18 Total: -4.07 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.75 Total: -85.78 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.06 Total: -31.84 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 35 Polarization: -1.88 SS G_CDS: -0.61 Total: -2.49 kcal Total: -77.93 4.86 -73.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160801356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.232 kcal (2) G-P(sol) polarization free energy of solvation -77.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds