Wall clock time and date at job start Tue Mar 31 2020 14:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47202 * 2 1 4 4 C 1.46501 * 120.00344 * 265.08259 * 3 2 1 5 5 C 1.50699 * 109.46937 * 283.77284 * 4 3 2 6 6 H 1.08004 * 120.00205 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99927 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99677 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99961 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46902 * 90.00505 * 9 7 5 11 11 H 1.48504 * 109.46971 * 209.99894 * 9 7 5 12 12 H 1.48498 * 109.47399 * 330.00020 * 9 7 5 13 13 C 1.34774 * 119.99610 * 85.08051 * 3 2 1 14 14 O 1.21557 * 120.00528 * 6.73809 * 13 3 2 15 15 C 1.47795 * 119.99709 * 186.74204 * 13 3 2 16 16 C 1.39617 * 120.14986 * 325.89006 * 15 13 3 17 17 C 1.37910 * 119.85877 * 179.97438 * 16 15 13 18 18 C 1.38416 * 120.17432 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.84315 * 179.97438 * 18 17 16 20 20 C 1.38286 * 120.31228 * 359.74519 * 18 17 16 21 21 C 1.38119 * 120.13083 * 0.50682 * 20 18 17 22 22 Br 1.89100 * 120.08632 * 179.76808 * 21 20 18 23 23 H 1.09003 * 109.47118 * 59.99854 * 1 2 3 24 24 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46685 * 299.99780 * 1 2 3 26 26 H 1.09006 * 109.46990 * 240.00303 * 2 1 3 27 27 H 1.08995 * 109.47294 * 120.00423 * 2 1 3 28 28 H 1.08999 * 109.47260 * 43.76922 * 4 3 2 29 29 H 1.08994 * 109.47387 * 163.76983 * 4 3 2 30 30 H 0.97002 * 119.99219 * 180.02562 * 8 7 5 31 31 H 1.07995 * 120.07400 * 0.02562 * 16 15 13 32 32 H 1.07999 * 119.91474 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47106 * 89.99846 * 19 18 17 34 34 H 1.09001 * 109.47394 * 210.00012 * 19 18 17 35 35 H 1.08997 * 109.47387 * 330.00309 * 19 18 17 36 36 H 1.07994 * 119.93755 * 180.27408 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3651 2.0356 -1.2640 5 6 3.6963 1.5206 -1.7476 6 1 4.2308 0.7803 -1.1709 7 6 4.2318 1.9947 -2.9264 8 7 5.3934 1.5449 -3.3487 9 14 3.3071 3.2747 -3.9243 10 1 3.7123 4.6335 -3.4833 11 1 3.6274 3.1057 -5.3645 12 1 1.8466 3.1024 -3.7185 13 6 2.1486 2.0498 1.1629 14 8 1.9793 1.4717 2.2188 15 6 2.4972 3.4860 1.1545 16 6 3.3449 3.9961 0.1693 17 6 3.6658 5.3373 0.1668 18 6 3.1502 6.1779 1.1382 19 6 3.5063 7.6422 1.1287 20 6 2.3062 5.6812 2.1145 21 6 1.9805 4.3390 2.1322 22 35 0.8315 3.6600 3.4718 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.5991 1.8175 -2.0082 29 1 2.4263 3.1129 -1.1106 30 1 5.7703 1.8787 -4.1778 31 1 3.7478 3.3419 -0.5897 32 1 4.3211 5.7329 -0.5951 33 1 2.7797 8.1889 0.5276 34 1 3.4955 8.0254 2.1491 35 1 4.5011 7.7715 0.7025 36 1 1.9039 6.3432 2.8669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162094204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:28 Heat of formation + Delta-G solvation = 13.758531 kcal Electronic energy + Delta-G solvation = -20153.329355 eV Core-core repulsion = 17070.709436 eV Total energy + Delta-G solvation = -3082.619919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07134 -38.17040 -35.50238 -33.24562 -32.72826 -31.98319 -30.32487 -29.09895 -27.97927 -27.07856 -23.23914 -22.87376 -22.17258 -21.13298 -18.93816 -17.13052 -16.74024 -16.03992 -15.38502 -14.89564 -14.56303 -14.54072 -13.93168 -13.66264 -13.47118 -13.27421 -12.98878 -12.60550 -12.38251 -12.25860 -12.01790 -11.88127 -11.65290 -11.29827 -11.03621 -10.92860 -10.58790 -10.45848 -10.37907 -10.14593 -10.00219 -9.70562 -8.91245 -8.89279 -8.41958 -8.39283 -7.74996 -6.35662 -4.38691 1.07360 1.43509 1.91181 3.06959 3.17506 3.19582 3.28114 3.72891 4.00838 4.14068 4.81801 4.91201 5.04684 5.10257 5.28625 5.39433 5.55807 5.61854 5.64978 5.78606 5.85520 5.86170 5.92955 6.16683 6.26510 6.32620 6.36699 6.46790 6.55002 6.59711 6.68217 6.71163 7.05787 7.22392 7.37824 8.01530 8.33403 8.71657 8.84928 9.22246 10.75893 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.006630 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.084981 B = 4222.007920 C = 5869.088984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.581 5.581 4 C 0.179 3.821 5 C -0.545 4.545 6 H 0.083 0.917 7 C 0.081 3.919 8 N -0.881 5.881 9 Si 0.861 3.139 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.261 1.261 13 C 0.550 3.450 14 O -0.537 6.537 15 C -0.110 4.110 16 C -0.085 4.085 17 C -0.123 4.123 18 C -0.068 4.068 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.043 4.043 22 Br -0.037 7.037 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.055 0.945 30 H 0.269 0.731 31 H 0.191 0.809 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.683 9.145 8.111 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.311 5.311 4 C 0.059 3.941 5 C -0.583 4.583 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.517 5.517 9 Si 0.686 3.314 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.185 1.185 13 C 0.338 3.662 14 O -0.416 6.416 15 C -0.115 4.115 16 C -0.103 4.103 17 C -0.142 4.142 18 C -0.069 4.069 19 C -0.170 4.170 20 C -0.135 4.135 21 C -0.124 4.124 22 Br 0.049 6.951 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.207 0.793 32 H 0.149 0.851 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.075 8.557 8.995 14.810 hybrid contribution -0.040 0.813 -1.145 1.405 sum -8.115 9.369 7.850 14.671 Atomic orbital electron populations 1.22125 0.96863 1.01418 1.01856 1.21265 0.93146 0.82907 1.03172 1.47752 1.62869 1.13459 1.07024 1.20617 0.96968 0.94962 0.81589 1.21353 1.02931 1.26272 1.07746 0.89911 1.24899 0.94614 0.96215 0.96727 1.69889 1.17071 1.42449 1.22290 0.87070 0.81325 0.82493 0.80498 1.19270 1.20524 1.18528 1.18063 0.77860 0.86147 0.84141 1.90762 1.51672 1.68835 1.30346 1.19876 1.00781 0.94384 0.96413 1.22916 0.93784 0.96798 0.96801 1.21241 1.00530 0.93626 0.98775 1.20064 0.95983 0.96364 0.94492 1.20815 1.02120 0.91435 1.02657 1.20783 0.99766 0.93010 0.99927 1.21815 0.99939 0.94998 0.95651 1.96672 1.61257 1.88076 1.49059 0.92834 0.92169 0.92681 0.89686 0.90825 0.95265 0.92767 0.92068 0.79297 0.85107 0.90931 0.91428 0.91128 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.21 37.16 0.38 -2.22 16 2 C 0.12 2.19 6.08 -4.04 -0.02 2.17 16 3 N -0.58 -12.19 2.50 -176.20 -0.44 -12.63 16 4 C 0.18 3.93 3.73 -5.19 -0.02 3.91 16 5 C -0.55 -13.77 8.10 -34.44 -0.28 -14.05 16 6 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 7 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 8 N -0.88 -24.41 13.96 55.43 0.77 -23.64 16 9 Si 0.86 18.76 27.47 -169.99 -4.67 14.09 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 12 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 13 C 0.55 11.76 7.10 -12.35 -0.09 11.67 16 14 O -0.54 -12.10 14.22 5.32 0.08 -12.02 16 15 C -0.11 -2.16 5.51 -104.94 -0.58 -2.74 16 16 C -0.08 -1.62 7.42 -39.19 -0.29 -1.91 16 17 C -0.12 -1.98 9.68 -39.64 -0.38 -2.36 16 18 C -0.07 -0.94 5.89 -104.54 -0.62 -1.56 16 19 C -0.11 -1.13 10.00 36.00 0.36 -0.77 16 20 C -0.11 -1.67 9.42 -39.61 -0.37 -2.05 16 21 C -0.04 -0.76 6.24 -39.09 -0.24 -1.00 16 22 Br -0.04 -0.61 31.02 -68.01 -2.11 -2.72 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.58 7.93 -51.93 -0.41 1.17 16 27 H 0.07 1.39 7.49 -51.93 -0.39 1.00 16 28 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 29 H 0.06 1.17 3.25 -52.11 -0.17 1.00 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.19 4.07 3.87 -52.49 -0.20 3.86 16 32 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -28.40 315.72 -8.38 -36.78 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.51 Total: 4.31 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.25 Total: -8.93 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.33 Total: -36.27 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.67 Total: 14.09 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.11 Total: -2.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.40 -8.38 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162094204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.535 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds